Rmu_sc0000795.1_g000071

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000795.1
OG0016428
Physical Location & Seq
Reverse (-)
333036 .. 333551
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000795.1_g000071.1.cds

Sequence Viewer

Length: 516 bp
atggaaaaggcataccagacgctggagtggagttatgaccaaatggataataaggatcataagcagttgttcttgctttgcggaattatagcaagacagaaccataatcatgtgctagagttgttaaagtatggtatgggtttagatttgtttacaaacatcaaaacagtggaagatgcacaaaataaattggaaacactgcttgataaactaagggatttctgtttgttgttggatagtactgaaacaaatggcagtgtcagaatgcatgatcttgtctgtcatgttgcgaagcagattgcatacagagatcaacatgtgttatcagtagagtatggaggtgagttggaagaatggccaagaaaagatttcttgaaaaactgcactaagatatctctcatgctcagcgttgttcccagactttctgaaatatcattggagtgcccggaactagaaatgttttatttgcataatactgaaaataagctttgtggggatttcatcagaattttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

171

Amino Acids

20.04

Weight (kDa)

5.34

Isoelectric Point (pI)

38.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 22
AciI CCGC 1 cut(s) 81
AclWI GGATC 1 cut(s) 63
AcoI YGGCCR 1 cut(s) 356
AcsI RAATTY 1 cut(s) 507
AfaI GTAC 1 cut(s) 241
AfiI CCNNNNNNNGG 1 cut(s) 22
AflIII ACRYGT 1 cut(s) 316
AgsI TTSAA 1 cut(s) 376
AluBI AGCT 1 cut(s) 487
AluI AGCT 1 cut(s) 487
AlwI GGATC 1 cut(s) 63
AlwNI CAGNNNCTG 1 cut(s) 22
AoxI GGCC 1 cut(s) 356
ApoI RAATTY 1 cut(s) 507
AsuC2I CCSGG 1 cut(s) 446
AsuHPI GGTGA 1 cut(s) 353
BaeGI GKGCMC 1 cut(s) 446
BalI TGGCCA 1 cut(s) 358
BcnI CCSGG 1 cut(s) 446
BfaI CTAG 2 cut(s) 116, 452
BlpI GCTNAGC 1 cut(s) 404
BmcAI AGTACT 1 cut(s) 241
Bme1390I CCNGG 1 cut(s) 446
BmrFI CCNGG 1 cut(s) 446
BmsI GCATC 1 cut(s) 166
BpmI CTGGAG 1 cut(s) 44
Bpu1102I GCTNAGC 1 cut(s) 404
BpuMI CCSGG 1 cut(s) 446
Bsc4I CCNNNNNNNGG 1 cut(s) 22
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMII CTCAG 1 cut(s) 418
BseSI GKGCMC 1 cut(s) 446
BsgI GTGCAG 1 cut(s) 367
BshFI GGCC 1 cut(s) 358
BsiSI CCGG 1 cut(s) 446
BslI CCNNNNNNNGG 1 cut(s) 22
BsmI GAATGC 1 cut(s) 270
BsnI GGCC 1 cut(s) 358
Bsp1286I GDGCHC 1 cut(s) 446
Bsp143I GATC 3 cut(s) 55, 271, 310
Bsp1720I GCTNAGC 1 cut(s) 404
BspACI CCGC 1 cut(s) 81
BspANI GGCC 1 cut(s) 358
BspCNI CTCAG 1 cut(s) 417
BspPI GGATC 1 cut(s) 63
BssMI GATC 3 cut(s) 55, 271, 310
Bst4CI ACNGT 1 cut(s) 169
BstDEI CTNAG 3 cut(s) 212, 387, 404
BstKTI GATC 3 cut(s) 58, 274, 313
BstMBI GATC 3 cut(s) 55, 271, 310
BstNSI RCATGY 1 cut(s) 320
BstSCI CCNGG 1 cut(s) 444
BstSLI GKGCMC 1 cut(s) 446
BsuRI GGCC 1 cut(s) 358
BtsI GCAGTG 2 cut(s) 197, 262
BtsIMutI CAGTG 3 cut(s) 174, 197, 262
CaiI CAGNNNCTG 1 cut(s) 22
CseI GACGC 1 cut(s) 28
Csp6I GTAC 1 cut(s) 240
CviAII CATG 5 cut(s) 110, 269, 284, 317, 400
CviJI RGCY 2 cut(s) 358, 487
CviKI_1 RGCY 2 cut(s) 358, 487
CviQI GTAC 1 cut(s) 240
DdeI CTNAG 3 cut(s) 212, 387, 404
DpnI GATC 3 cut(s) 57, 273, 312
DpnII GATC 3 cut(s) 55, 271, 310
EaeI YGGCCR 1 cut(s) 356
Eco32I GATATC 1 cut(s) 393
EcoRV GATATC 1 cut(s) 393
EcoT22I ATGCAT 1 cut(s) 270
FaeI CATG 5 cut(s) 113, 272, 287, 320, 403
FatI CATG 5 cut(s) 109, 268, 283, 316, 399
FspBI CTAG 2 cut(s) 116, 452
GsuI CTGGAG 1 cut(s) 44
HaeIII GGCC 1 cut(s) 358
HapII CCGG 1 cut(s) 446
HgaI GACGC 1 cut(s) 28
Hin1II CATG 5 cut(s) 113, 272, 287, 320, 403
HindIII AAGCTT 1 cut(s) 485
HpaII CCGG 1 cut(s) 446
HphI GGTGA 1 cut(s) 353
Hpy166II GTNNAC 1 cut(s) 153
Hpy188I TCNGA 3 cut(s) 263, 427, 506
Hpy188III TCNNGA 1 cut(s) 373
Hpy8I GTNNAC 1 cut(s) 153
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4V TGCA 5 cut(s) 179, 268, 302, 384, 469
HpyF3I CTNAG 3 cut(s) 212, 387, 404
Hsp92II CATG 5 cut(s) 113, 272, 287, 320, 403
Kzo9I GATC 3 cut(s) 55, 271, 310
LpnPI CCDG 4 cut(s) 8, 29, 430, 459
LweI GCATC 1 cut(s) 166
MaeI CTAG 2 cut(s) 116, 452
MalI GATC 3 cut(s) 57, 273, 312
MboI GATC 3 cut(s) 55, 271, 310
MboII GAAGA 2 cut(s) 185, 362
MhlI GDGCHC 1 cut(s) 446
MlsI TGGCCA 1 cut(s) 358
MluCI AATT 3 cut(s) 84, 188, 507
MluNI TGGCCA 1 cut(s) 358
MmeI TCCRAC 2 cut(s) 213, 327
MnlI CCTC 1 cut(s) 332
Mox20I TGGCCA 1 cut(s) 358
Mph1103I ATGCAT 1 cut(s) 270
MscI TGGCCA 1 cut(s) 358
MseI TTAA 1 cut(s) 125
MslI CAYNNNNRTG 2 cut(s) 108, 439
Msp20I TGGCCA 1 cut(s) 358
MspI CCGG 1 cut(s) 446
MspR9I CCNGG 1 cut(s) 446
Mva1269I GAATGC 1 cut(s) 270
NciI CCSGG 1 cut(s) 446
NdeII GATC 3 cut(s) 55, 271, 310
NlaIII CATG 5 cut(s) 113, 272, 287, 320, 403
NsiI ATGCAT 1 cut(s) 270
NspI RCATGY 1 cut(s) 320
PciI ACATGT 1 cut(s) 316
PctI GAATGC 1 cut(s) 270
PflMI CCANNNNNTGG 1 cut(s) 22
PscI ACATGT 1 cut(s) 316
PstNI CAGNNNCTG 1 cut(s) 22
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
RseI CAYNNNNRTG 2 cut(s) 108, 439
SaqAI TTAA 1 cut(s) 125
Sau3AI GATC 3 cut(s) 55, 271, 310
ScaI AGTACT 1 cut(s) 241
ScrFI CCNGG 1 cut(s) 446
SduI GDGCHC 1 cut(s) 446
SetI ASST 2 cut(s) 343, 489
SfaNI GCATC 1 cut(s) 166
SmiMI CAYNNNNRTG 2 cut(s) 108, 439
Sse9I AATT 3 cut(s) 84, 188, 507
SsiI CCGC 1 cut(s) 81
SspMI CTAG 2 cut(s) 116, 452
StyD4I CCNGG 1 cut(s) 444
TaaI ACNGT 1 cut(s) 169
TasI AATT 3 cut(s) 84, 188, 507
TatI WGTACW 1 cut(s) 239
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TscAI CASTG 3 cut(s) 174, 204, 262
TspDTI ATGAA 1 cut(s) 490
TspRI CASTG 3 cut(s) 174, 204, 262
Van91I CCANNNNNTGG 1 cut(s) 22
XapI RAATTY 1 cut(s) 507
XceI RCATGY 1 cut(s) 320
XspI CTAG 2 cut(s) 116, 452
ZrmI AGTACT 1 cut(s) 241
Zsp2I ATGCAT 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.