Rh5AG050300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0016428
Physical Location & Seq
Forward (+)
4253108 .. 4253457
350 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG050300.1

Sequence Viewer

Length: 201 bp
ATGGTTAGAGTTGTTTTGGGCCCTCGGGTTGTCTTGAGCACTAATGGTCGTGATGTTGGCCATGGCAGCATTGCGGGCTATGTTAATGGCAATGCGGATGGTTTTGGTAAAGCCAATGGTGTTGGCACTGTTGCTAACGGCGGCGGCGCTAAAGTTAGTCTGCTTCTAGGGTGGCTAGGTCTTCTTTTTGTTGTATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

6.58

Weight (kDa)

10.27

Isoelectric Point (pI)

-8.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 74, 95, 141, 144
AcoI YGGCCR 1 cut(s) 58
Alw21I GWGCWC 1 cut(s) 41
Ama87I CYCGRG 1 cut(s) 24
AoxI GGCC 2 cut(s) 19, 58
ApaI GGGCCC 1 cut(s) 23
ApeKI GCWGC 1 cut(s) 66
AspLEI GCGC 1 cut(s) 149
AspS9I GGNCC 2 cut(s) 19, 20
AvaI CYCGRG 1 cut(s) 24
BaeGI GKGCMC 1 cut(s) 23
BalI TGGCCA 1 cut(s) 60
BanII GRGCYC 1 cut(s) 23
BbsI GAAGAC 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 41
BbvI GCAGC 1 cut(s) 78
BccI CCATC 1 cut(s) 92
BceAI ACGGC 1 cut(s) 154
BfaI CTAG 2 cut(s) 167, 176
BfoI RGCGCY 1 cut(s) 150
BisI GCNGC 3 cut(s) 67, 142, 145
BlsI GCNGC 3 cut(s) 68, 143, 146
BmeT110I CYCGRG 1 cut(s) 24
BmgT120I GGNCC 2 cut(s) 19, 20
BmiI GGNNCC 1 cut(s) 21
BpiI GAAGAC 1 cut(s) 173
BpuEI CTTGAG 1 cut(s) 55
BsaJI CCNNGG 2 cut(s) 23, 61
Bse3DI GCAATG 2 cut(s) 69, 97
BseDI CCNNGG 2 cut(s) 23, 61
BseGI GGATG 1 cut(s) 103
BseMI GCAATG 2 cut(s) 69, 97
BseSI GKGCMC 1 cut(s) 23
BseXI GCAGC 1 cut(s) 78
BshFI GGCC 2 cut(s) 21, 60
BsiHKAI GWGCWC 1 cut(s) 41
BsiHKCI CYCGRG 1 cut(s) 24
BsnI GGCC 2 cut(s) 21, 60
BsoBI CYCGRG 1 cut(s) 24
Bsp120I GGGCCC 1 cut(s) 19
Bsp1286I GDGCHC 2 cut(s) 23, 41
Bsp19I CCATGG 1 cut(s) 61
BspACI CCGC 4 cut(s) 74, 95, 141, 144
BspANI GGCC 2 cut(s) 21, 60
BspLI GGNNCC 1 cut(s) 21
BsrDI GCAATG 2 cut(s) 69, 97
BssECI CCNNGG 2 cut(s) 23, 61
BssT1I CCWWGG 1 cut(s) 61
Bst4CI ACNGT 1 cut(s) 130
BstC8I GCNNGC 1 cut(s) 76
BstDSI CCRYGG 1 cut(s) 61
BstF5I GGATG 1 cut(s) 103
BstH2I RGCGCY 1 cut(s) 150
BstHHI GCGC 1 cut(s) 149
BstMWI GCNNNNNNNGC 2 cut(s) 66, 75
BstSLI GKGCMC 1 cut(s) 23
BstV1I GCAGC 1 cut(s) 78
BstV2I GAAGAC 1 cut(s) 173
BsuRI GGCC 2 cut(s) 21, 60
BtgI CCRYGG 1 cut(s) 61
BtsCI GGATG 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 76
CfoI GCGC 1 cut(s) 149
Cfr13I GGNCC 2 cut(s) 19, 20
CviAII CATG 1 cut(s) 62
CviJI RGCY 5 cut(s) 21, 60, 78, 113, 175
CviKI_1 RGCY 5 cut(s) 21, 60, 78, 113, 175
EaeI YGGCCR 1 cut(s) 58
Eco130I CCWWGG 1 cut(s) 61
Eco24I GRGCYC 1 cut(s) 23
Eco88I CYCGRG 1 cut(s) 24
EcoO109I RGGNCCY 1 cut(s) 20
EcoT14I CCWWGG 1 cut(s) 61
EcoT38I GRGCYC 1 cut(s) 23
ErhI CCWWGG 1 cut(s) 61
FaeI CATG 1 cut(s) 65
FaiI YATR 2 cut(s) 63, 81
FatI CATG 1 cut(s) 61
FauI CCCGC 1 cut(s) 67
Fnu4HI GCNGC 3 cut(s) 67, 142, 145
FokI GGATG 1 cut(s) 110
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 3 cut(s) 67, 142, 145
FspBI CTAG 2 cut(s) 167, 176
GlaI GCGC 1 cut(s) 148
GluI GCNGC 3 cut(s) 67, 142, 145
HaeII RGCGCY 1 cut(s) 150
HaeIII GGCC 2 cut(s) 21, 60
HhaI GCGC 1 cut(s) 149
Hin1II CATG 1 cut(s) 65
Hin6I GCGC 1 cut(s) 147
HinP1I GCGC 1 cut(s) 147
Hpy188III TCNNGA 2 cut(s) 34, 50
HpyCH4III ACNGT 1 cut(s) 130
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 75
Hsp92II CATG 1 cut(s) 65
HspAI GCGC 1 cut(s) 147
Lsp1109I GCAGC 1 cut(s) 78
MaeI CTAG 2 cut(s) 167, 176
MboII GAAGA 1 cut(s) 173
MhlI GDGCHC 2 cut(s) 23, 41
MlsI TGGCCA 1 cut(s) 60
MluNI TGGCCA 1 cut(s) 60
MnlI CCTC 1 cut(s) 33
Mox20I TGGCCA 1 cut(s) 60
MscI TGGCCA 1 cut(s) 60
MseI TTAA 2 cut(s) 84, 199
Msp20I TGGCCA 1 cut(s) 60
MwoI GCNNNNNNNGC 2 cut(s) 66, 75
NcoI CCATGG 1 cut(s) 61
NlaIII CATG 1 cut(s) 65
NlaIV GGNNCC 1 cut(s) 21
PkrI GCNGC 3 cut(s) 68, 143, 146
PspN4I GGNNCC 1 cut(s) 21
PspOMI GGGCCC 1 cut(s) 19
PspPI GGNCC 2 cut(s) 19, 20
SaqAI TTAA 2 cut(s) 84, 199
SatI GCNGC 3 cut(s) 67, 142, 145
Sau96I GGNCC 2 cut(s) 19, 20
SduI GDGCHC 2 cut(s) 23, 41
SetI ASST 1 cut(s) 181
SgeI CNNG 8 cut(s) 36, 38, 46, 62, 74, 87, 179, 188
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
SsiI CCGC 4 cut(s) 74, 95, 141, 144
SspMI CTAG 2 cut(s) 167, 176
StyI CCWWGG 1 cut(s) 61
TaaI ACNGT 1 cut(s) 130
TauI GCSGC 2 cut(s) 144, 147
Tru1I TTAA 2 cut(s) 84, 199
Tru9I TTAA 2 cut(s) 84, 199
TscAI CASTG 1 cut(s) 133
TseI GCWGC 1 cut(s) 66
TspRI CASTG 1 cut(s) 133
XspI CTAG 2 cut(s) 167, 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.