Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0016428

Physical Location & Seq

Genomic Coordinates Reverse (-)

62999491 .. 63000152

Gene Structure 662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG376400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAGCGCCATCGATGATGAGATAGAGGCCTCACAGCGGGTGGTGGATTTGATGCCTGCCTTCCCTTGGCTGGTTGGACGTTTTGCTTCAGAGGAGAAGATGGTGGCTGCTCAACATCGACCTTTGGGTGGAGGTGGTGATGTTGTCGGCGGCGGCGATGCTGATGGAAGTGCTCCTAGCCAATTTGTTCCAATGGTGGTTAAGGTTGTTTTGGGCCCTCGGGTTGTCTTGAGCCCTAATGGTGGTGATGTTGGCCATGGCGGGATTCCGGGCTGTGGCAATGGCAATGCAGACGGTGTTGGTAAAGCCGGTGGTGTCGGCACTGTTGCTAACGGCGGCAGTGCTAAAGATTACGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

119

Amino Acids

11.7

Weight (kDa)

4.71

Isoelectric Point (pI)

38.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016428)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0353441
rosa_laevigata	RLG00000002898 RLG00000006469 RLG00000026860 RLG00000028660 RLG00000031404 RLG00000032241 RLG00000033705 RLG00000035889
rosa_multiflora	Rmu_sc0000795.1_g000071
rosa_roxburghii	Rroxscaffold_1G00069430
rosa_samantha	Rh3BG274900 Rh4CG376400 Rh5AG050300 Rh5AG385000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	37, 150, 153, 261, 336
AcoI	YGGCCR	1 cut(s)	253
AcuI	CTGAAG	1 cut(s)	72
AfiI	CCNNNNNNNGG	6 cut(s)	36, 66, 70, 128, 242, 275
Alw21I	GWGCWC	1 cut(s)	175
Ama87I	CYCGRG	1 cut(s)	219
AoxI	GGCC	3 cut(s)	27, 214, 253
ApaI	GGGCCC	1 cut(s)	218
ApeKI	GCWGC	1 cut(s)	107
AspLEI	GCGC	1 cut(s)	8
AspS9I	GGNCC	2 cut(s)	214, 215
AsuC2I	CCSGG	1 cut(s)	270
AsuHPI	GGTGA	2 cut(s)	149, 257
AvaI	CYCGRG	1 cut(s)	219
BaeGI	GKGCMC	1 cut(s)	218
BalI	TGGCCA	1 cut(s)	255
BanII	GRGCYC	2 cut(s)	218, 236
Bbv12I	GWGCWC	1 cut(s)	175
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	3 cut(s)	17, 94, 158
BceAI	ACGGC	1 cut(s)	349
BcnI	CCSGG	1 cut(s)	270
BfaI	CTAG	1 cut(s)	177
BfoI	RGCGCY	1 cut(s)	9
BisI	GCNGC	4 cut(s)	108, 151, 154, 337
BlsI	GCNGC	4 cut(s)	109, 152, 155, 338
Bme1390I	CCNGG	1 cut(s)	270
BmeT110I	CYCGRG	1 cut(s)	219
BmgT120I	GGNCC	2 cut(s)	214, 215
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	2 cut(s)	42, 148
BpuEI	CTTGAG	1 cut(s)	250
BpuMI	CCSGG	1 cut(s)	270
Bsa29I	ATCGAT	1 cut(s)	12
BsaJI	CCNNGG	3 cut(s)	65, 218, 256
Bsc4I	CCNNNNNNNGG	6 cut(s)	36, 66, 70, 128, 242, 275
Bse118I	RCCGGY	1 cut(s)	308
Bse3DI	GCAATG	2 cut(s)	286, 292
BseCI	ATCGAT	1 cut(s)	12
BseDI	CCNNGG	3 cut(s)	65, 218, 256
BseLI	CCNNNNNNNGG	6 cut(s)	36, 66, 70, 128, 242, 275
BseMI	GCAATG	2 cut(s)	286, 292
BseRI	GAGGAG	1 cut(s)	107
BseSI	GKGCMC	1 cut(s)	218
BseXI	GCAGC	1 cut(s)	94
BshFI	GGCC	3 cut(s)	29, 216, 255
BshVI	ATCGAT	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	175
BsiHKCI	CYCGRG	1 cut(s)	219
BsiSI	CCGG	2 cut(s)	269, 309
BslI	CCNNNNNNNGG	6 cut(s)	36, 66, 70, 128, 242, 275
BsnI	GGCC	3 cut(s)	29, 216, 255
BsoBI	CYCGRG	1 cut(s)	219
Bsp120I	GGGCCC	1 cut(s)	214
Bsp1286I	GDGCHC	3 cut(s)	175, 218, 236
Bsp19I	CCATGG	1 cut(s)	256
BspACI	CCGC	5 cut(s)	37, 150, 153, 261, 336
BspANI	GGCC	3 cut(s)	29, 216, 255
BspDI	ATCGAT	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	216
BsrDI	GCAATG	2 cut(s)	286, 292
BsrFI	RCCGGY	1 cut(s)	308
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	3 cut(s)	65, 218, 256
BssT1I	CCWWGG	2 cut(s)	65, 256
Bst4CI	ACNGT	2 cut(s)	296, 325
BstC8I	GCNNGC	1 cut(s)	57
BstDSI	CCRYGG	1 cut(s)	256
BstH2I	RGCGCY	1 cut(s)	9
BstHHI	GCGC	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	268
BstSLI	GKGCMC	1 cut(s)	218
BstV1I	GCAGC	1 cut(s)	94
Bsu15I	ATCGAT	1 cut(s)	12
BsuRI	GGCC	3 cut(s)	29, 216, 255
BsuTUI	ATCGAT	1 cut(s)	12
BtgI	CCRYGG	1 cut(s)	256
BtgZI	GCGATG	1 cut(s)	171
BtsI	GCAGTG	1 cut(s)	346
BtsIMutI	CAGTG	2 cut(s)	321, 346
Cac8I	GCNNGC	1 cut(s)	57
CfoI	GCGC	1 cut(s)	8
Cfr10I	RCCGGY	1 cut(s)	308
Cfr13I	GGNCC	2 cut(s)	214, 215
ClaI	ATCGAT	1 cut(s)	12
CviAII	CATG	1 cut(s)	257
CviJI	RGCY	9 cut(s)	29, 70, 107, 180, 216, 234, 255, 273, 308
CviKI_1	RGCY	9 cut(s)	29, 70, 107, 180, 216, 234, 255, 273, 308
EaeI	YGGCCR	1 cut(s)	253
Eco130I	CCWWGG	2 cut(s)	65, 256
Eco147I	AGGCCT	1 cut(s)	29
Eco24I	GRGCYC	2 cut(s)	218, 236
Eco57I	CTGAAG	1 cut(s)	72
Eco88I	CYCGRG	1 cut(s)	219
EcoO109I	RGGNCCY	1 cut(s)	215
EcoT14I	CCWWGG	2 cut(s)	65, 256
EcoT38I	GRGCYC	2 cut(s)	218, 236
ErhI	CCWWGG	2 cut(s)	65, 256
FaeI	CATG	1 cut(s)	260
FaiI	YATR	1 cut(s)	258
FatI	CATG	1 cut(s)	256
FauI	CCCGC	2 cut(s)	30, 254
Fnu4HI	GCNGC	4 cut(s)	108, 151, 154, 337
FriOI	GRGCYC	2 cut(s)	218, 236
Fsp4HI	GCNGC	4 cut(s)	108, 151, 154, 337
FspBI	CTAG	1 cut(s)	177
GlaI	GCGC	1 cut(s)	7
GluI	GCNGC	4 cut(s)	108, 151, 154, 337
HaeII	RGCGCY	1 cut(s)	9
HaeIII	GGCC	3 cut(s)	29, 216, 255
HapII	CCGG	2 cut(s)	269, 309
HhaI	GCGC	1 cut(s)	8
Hin1II	CATG	1 cut(s)	260
Hin6I	GCGC	1 cut(s)	6
HinP1I	GCGC	1 cut(s)	6
HinfI	GANTC	1 cut(s)	265
HpaII	CCGG	2 cut(s)	269, 309
HphI	GGTGA	2 cut(s)	149, 257
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	1 cut(s)	229
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	2 cut(s)	296, 325
HpyCH4IV	ACGT	2 cut(s)	79, 354
HpyCH4V	TGCA	1 cut(s)	290
HpySE526I	ACGT	2 cut(s)	79, 354
Hsp92II	CATG	1 cut(s)	260
HspAI	GCGC	1 cut(s)	6
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	4 cut(s)	56, 69, 282, 322
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	2 cut(s)	42, 148
MaeI	CTAG	1 cut(s)	177
MaeII	ACGT	2 cut(s)	79, 354
MboII	GAAGA	1 cut(s)	109
MhlI	GDGCHC	3 cut(s)	175, 218, 236
MlsI	TGGCCA	1 cut(s)	255
MluCI	AATT	1 cut(s)	182
MluNI	TGGCCA	1 cut(s)	255
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	5 cut(s)	19, 40, 85, 125, 228
Mox20I	TGGCCA	1 cut(s)	255
MscI	TGGCCA	1 cut(s)	255
MseI	TTAA	1 cut(s)	201
Msp20I	TGGCCA	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	37
MspI	CCGG	2 cut(s)	269, 309
MspR9I	CCNGG	1 cut(s)	270
NciI	CCSGG	1 cut(s)	270
NcoI	CCATGG	1 cut(s)	256
NlaIII	CATG	1 cut(s)	260
NlaIV	GGNNCC	1 cut(s)	216
PceI	AGGCCT	1 cut(s)	29
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	265
PkrI	GCNGC	4 cut(s)	109, 152, 155, 338
PspN4I	GGNNCC	1 cut(s)	216
PspOMI	GGGCCC	1 cut(s)	214
PspPI	GGNCC	2 cut(s)	214, 215
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	4 cut(s)	108, 151, 154, 337
Sau96I	GGNCC	2 cut(s)	214, 215
ScrFI	CCNGG	1 cut(s)	270
SduI	GDGCHC	3 cut(s)	175, 218, 236
SetI	ASST	5 cut(s)	82, 124, 136, 207, 357
SfaNI	GCATC	2 cut(s)	42, 148
SmlI	CTYRAG	1 cut(s)	229
SmoI	CTYRAG	1 cut(s)	229
Sse9I	AATT	1 cut(s)	182
SseBI	AGGCCT	1 cut(s)	29
SsiI	CCGC	5 cut(s)	37, 150, 153, 261, 336
SspMI	CTAG	1 cut(s)	177
StuI	AGGCCT	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	268
StyI	CCWWGG	2 cut(s)	65, 256
TaaI	ACNGT	2 cut(s)	296, 325
TaiI	ACGT	2 cut(s)	82, 357
TaqI	TCGA	2 cut(s)	12, 118
TasI	AATT	1 cut(s)	182
TauI	GCSGC	3 cut(s)	153, 156, 339
TfiI	GAWTC	1 cut(s)	265
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	2 cut(s)	328, 346
TseI	GCWGC	1 cut(s)	107
TspRI	CASTG	2 cut(s)	328, 346
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.