RLG00000028660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0016428
Physical Location & Seq
Reverse (-)
25738692 .. 25739641
950 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028660

Sequence Viewer

Length: 465 bp
ATGGGCGCCTTTGTTGAGATAGAGGTCTCGCAACGGGTGGTGGATTTGATGCCAGCCTTCCCTTGGCTGGGTGGGCGTTTTGCTTCAGAGGAAAAGATGGTGGCTGCTCTGGGTCAGATTGTGCAACTCTGCTCTTGCTCTTGGTTTCTTGATCCAGGAGGAGCGGTGATGCTGGTGGAGGTGGTGCTGTCGGTGGCAGCGATGCTGATGGAGGTGCTCCTAGCCATTTTGTTCCAATGGTGGATAGGGTTGTTTTGCGGCCCCAGGTTGTCTTCAGCCCTAATGATGGTGATGTTAGCCATGGTGGCATTCCAACCTGTGGCAATGGCTACGCAGACGGTGTTGGTCAAGCCAGTGTCTATCAGCTATGGTTTTGGCACTAAGCTTATAAAAAAAACATTGGGGGAAACTCTGACAGGTTTGGAGACCTTGGAGTCAAAACAGAGTGATTCCAGTCCCGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

16.64

Weight (kDa)

4.85

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 389
AasI GACNNNNNNGTC 1 cut(s) 433
AccB1I GGYRCC 1 cut(s) 5
AccB7I CCANNNNNTGG 1 cut(s) 319
AccBSI CCGCTC 1 cut(s) 164
AciI CCGC 2 cut(s) 164, 258
AclWI GGATC 1 cut(s) 146
AcuI CTGAAG 2 cut(s) 69, 258
AcyI GRCGYC 1 cut(s) 6
AfiI CCNNNNNNNGG 5 cut(s) 63, 67, 68, 286, 319
AjnI CCWGG 2 cut(s) 154, 263
AluBI AGCT 2 cut(s) 366, 385
AluI AGCT 2 cut(s) 366, 385
Alw21I GWGCWC 1 cut(s) 219
Alw26I GTCTC 2 cut(s) 31, 419
AlwI GGATC 1 cut(s) 146
AoxI GGCC 1 cut(s) 259
ApeKI GCWGC 2 cut(s) 104, 197
AspLEI GCGC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 260
AsuHPI GGTGA 2 cut(s) 178, 301
BanI GGYRCC 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 219
BbvI GCAGC 2 cut(s) 91, 209
BccI CCATC 3 cut(s) 91, 202, 280
BciT130I CCWGG 2 cut(s) 156, 265
BcoDI GTCTC 2 cut(s) 31, 419
BfaI CTAG 1 cut(s) 221
BfoI RGCGCY 1 cut(s) 9
BglI GCCNNNNNGGC 1 cut(s) 305
BisI GCNGC 3 cut(s) 105, 198, 259
BlsI GCNGC 3 cut(s) 106, 199, 260
Bme1390I CCNGG 2 cut(s) 156, 265
BmgT120I GGNCC 1 cut(s) 260
BmiI GGNNCC 2 cut(s) 7, 262
BmrFI CCNGG 2 cut(s) 156, 265
BmsI GCATC 3 cut(s) 39, 159, 192
BpiI GAAGAC 1 cut(s) 264
BsaHI GRCGYC 1 cut(s) 6
BsaI GGTCTC 2 cut(s) 31, 419
BsaJI CCNNGG 4 cut(s) 62, 263, 300, 429
BsaXI ACNNNNNCTCC 2 cut(s) 150, 180
Bsc4I CCNNNNNNNGG 5 cut(s) 63, 67, 68, 286, 319
Bse1I ACTGG 2 cut(s) 353, 453
Bse3DI GCAATG 1 cut(s) 330
BseBI CCWGG 2 cut(s) 156, 265
BseDI CCNNGG 4 cut(s) 62, 263, 300, 429
BseLI CCNNNNNNNGG 5 cut(s) 63, 67, 68, 286, 319
BseMI GCAATG 1 cut(s) 330
BseNI ACTGG 2 cut(s) 353, 453
BseRI GAGGAG 1 cut(s) 174
BseXI GCAGC 2 cut(s) 91, 209
BseYI CCCAGC 1 cut(s) 67
BshFI GGCC 1 cut(s) 261
BshNI GGYRCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 219
BslFI GGGAC 1 cut(s) 441
BslI CCNNNNNNNGG 5 cut(s) 63, 67, 68, 286, 319
BsmAI GTCTC 2 cut(s) 31, 419
BsmFI GGGAC 1 cut(s) 441
BsmI GAATGC 1 cut(s) 308
BsnI GGCC 1 cut(s) 261
Bso31I GGTCTC 2 cut(s) 31, 419
Bsp1286I GDGCHC 1 cut(s) 219
Bsp143I GATC 1 cut(s) 151
Bsp19I CCATGG 1 cut(s) 300
BspACI CCGC 2 cut(s) 164, 258
BspANI GGCC 1 cut(s) 261
BspLI GGNNCC 2 cut(s) 7, 262
BspPI GGATC 1 cut(s) 146
BspT107I GGYRCC 1 cut(s) 5
BspTNI GGTCTC 2 cut(s) 31, 419
BsrBI CCGCTC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 330
BsrI ACTGG 2 cut(s) 353, 453
BssECI CCNNGG 4 cut(s) 62, 263, 300, 429
BssMI GATC 1 cut(s) 151
BssNI GRCGYC 1 cut(s) 6
BssT1I CCWWGG 3 cut(s) 62, 300, 429
Bst2UI CCWGG 2 cut(s) 156, 265
Bst4CI ACNGT 1 cut(s) 340
BstACI GRCGYC 1 cut(s) 6
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 1 cut(s) 381
BstDSI CCRYGG 1 cut(s) 300
BstH2I RGCGCY 1 cut(s) 9
BstHHI GCGC 1 cut(s) 8
BstKTI GATC 1 cut(s) 154
BstMAI GTCTC 2 cut(s) 31, 419
BstMBI GATC 1 cut(s) 151
BstMWI GCNNNNNNNGC 2 cut(s) 73, 305
BstNI CCWGG 2 cut(s) 156, 265
BstSCI CCNGG 2 cut(s) 154, 263
BstV1I GCAGC 2 cut(s) 91, 209
BstV2I GAAGAC 1 cut(s) 264
BsuRI GGCC 1 cut(s) 261
BtgI CCRYGG 1 cut(s) 300
BtgZI GCGATG 1 cut(s) 215
BtsIMutI CAGTG 1 cut(s) 360
Cac8I GCNNGC 1 cut(s) 54
CfoI GCGC 1 cut(s) 8
Cfr13I GGNCC 1 cut(s) 260
CviAII CATG 1 cut(s) 301
DdeI CTNAG 1 cut(s) 381
DinI GGCGCC 1 cut(s) 7
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
DrdI GACNNNNNNGTC 1 cut(s) 433
DseDI GACNNNNNNGTC 1 cut(s) 433
Eco130I CCWWGG 3 cut(s) 62, 300, 429
Eco31I GGTCTC 2 cut(s) 31, 419
Eco57I CTGAAG 2 cut(s) 69, 258
EcoRII CCWGG 2 cut(s) 154, 263
EcoT14I CCWWGG 3 cut(s) 62, 300, 429
EgeI GGCGCC 1 cut(s) 7
EheI GGCGCC 1 cut(s) 7
ErhI CCWWGG 3 cut(s) 62, 300, 429
FaeI CATG 1 cut(s) 304
FaiI YATR 4 cut(s) 302, 369, 389, 463
FaqI GGGAC 1 cut(s) 441
FatI CATG 1 cut(s) 300
Fnu4HI GCNGC 3 cut(s) 105, 198, 259
Fsp4HI GCNGC 3 cut(s) 105, 198, 259
FspBI CTAG 1 cut(s) 221
GlaI GCGC 1 cut(s) 7
GluI GCNGC 3 cut(s) 105, 198, 259
GsaI CCCAGC 1 cut(s) 71
HaeII RGCGCY 1 cut(s) 9
HaeIII GGCC 1 cut(s) 261
HhaI GCGC 1 cut(s) 8
Hin1I GRCGYC 1 cut(s) 6
Hin1II CATG 1 cut(s) 304
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HindIII AAGCTT 1 cut(s) 383
HinfI GANTC 2 cut(s) 434, 449
HphI GGTGA 2 cut(s) 178, 301
Hpy188I TCNGA 3 cut(s) 88, 117, 414
Hpy188III TCNNGA 1 cut(s) 149
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4V TGCA 1 cut(s) 124
HpyF10VI GCNNNNNNNGC 2 cut(s) 73, 305
HpyF3I CTNAG 1 cut(s) 381
Hsp92I GRCGYC 1 cut(s) 6
Hsp92II CATG 1 cut(s) 304
HspAI GCGC 1 cut(s) 6
KasI GGCGCC 1 cut(s) 5
Kzo9I GATC 1 cut(s) 151
LmnI GCTCC 2 cut(s) 161, 222
Lsp1109I GCAGC 2 cut(s) 91, 209
LweI GCATC 3 cut(s) 39, 159, 192
MaeI CTAG 1 cut(s) 221
MalI GATC 1 cut(s) 153
MbiI CCGCTC 1 cut(s) 164
MboI GATC 1 cut(s) 151
MboII GAAGA 1 cut(s) 264
MhlI GDGCHC 1 cut(s) 219
Mly113I GGCGCC 1 cut(s) 6
MlyI GAGTC 1 cut(s) 443
MmeI TCCRAC 1 cut(s) 337
MnlI CCTC 5 cut(s) 16, 82, 152, 172, 205
MspR9I CCNGG 2 cut(s) 156, 265
Mva1269I GAATGC 1 cut(s) 308
MvaI CCWGG 2 cut(s) 156, 265
MwoI GCNNNNNNNGC 2 cut(s) 73, 305
NarI GGCGCC 1 cut(s) 6
NcoI CCATGG 1 cut(s) 300
NdeII GATC 1 cut(s) 151
NlaIII CATG 1 cut(s) 304
NlaIV GGNNCC 2 cut(s) 7, 262
PcsI WCGNNNNNNNCGW 1 cut(s) 197
PctI GAATGC 1 cut(s) 308
PfeI GAWTC 1 cut(s) 449
PflMI CCANNNNNTGG 1 cut(s) 319
PfoI TCCNGGA 1 cut(s) 154
PkrI GCNGC 3 cut(s) 106, 199, 260
PleI GAGTC 1 cut(s) 442
PluTI GGCGCC 1 cut(s) 9
PpsI GAGTC 1 cut(s) 442
PsiI TTATAA 1 cut(s) 389
Psp6I CCWGG 2 cut(s) 154, 263
PspFI CCCAGC 1 cut(s) 67
PspGI CCWGG 2 cut(s) 154, 263
PspN4I GGNNCC 2 cut(s) 7, 262
PspPI GGNCC 1 cut(s) 260
SatI GCNGC 3 cut(s) 105, 198, 259
Sau3AI GATC 1 cut(s) 151
Sau96I GGNCC 1 cut(s) 260
SchI GAGTC 1 cut(s) 443
ScrFI CCNGG 2 cut(s) 156, 265
SduI GDGCHC 1 cut(s) 219
SetI ASST 9 cut(s) 27, 183, 216, 269, 319, 368, 387, 421, 431
SfaNI GCATC 3 cut(s) 39, 159, 192
SfoI GGCGCC 1 cut(s) 7
SsiI CCGC 2 cut(s) 164, 258
SspDI GGCGCC 1 cut(s) 5
SspMI CTAG 1 cut(s) 221
StyD4I CCNGG 2 cut(s) 154, 263
StyI CCWWGG 3 cut(s) 62, 300, 429
TaaI ACNGT 1 cut(s) 340
TauI GCSGC 1 cut(s) 261
TfiI GAWTC 1 cut(s) 449
TscAI CASTG 1 cut(s) 360
TseI GCWGC 2 cut(s) 104, 197
TspRI CASTG 1 cut(s) 360
Van91I CCANNNNNTGG 1 cut(s) 319
XcmI CCANNNNNNNNNTGG 1 cut(s) 60
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.