Transposase family tnp2
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0087751 RchiOBHm_Chr2g0088051 RchiOBHm_Chr2g0105621 RchiOBHm_Chr4g0441621 RchiOBHm_Chr7g0241891 |
| rosa_multiflora | Rmu_sc0024795.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00278210 Rroxscaffold_4G00278230 Rroxscaffold_5G00385410 Rroxscaffold_7G00177440 Rroxscaffold_7G00216970 |
| rosa_samantha | Rh2BG286600 Rh2BG436500 Rh2DG186600 Rh2DG282200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 257 |
| AfaI | GTAC | 2 cut(s) | 116, 297 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 119 |
| AgsI | TTSAA | 2 cut(s) | 40, 47 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 52, 84 |
| AluBI | AGCT | 2 cut(s) | 26, 281 |
| AluI | AGCT | 2 cut(s) | 26, 281 |
| AlwI | GGATC | 1 cut(s) | 257 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 11 |
| AsuHPI | GGTGA | 1 cut(s) | 314 |
| AsuII | TTCGAA | 1 cut(s) | 95 |
| BauI | CACGAG | 1 cut(s) | 282 |
| BceAI | ACGGC | 1 cut(s) | 97 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 85, 119 |
| Bpu10I | CCTNAGC | 1 cut(s) | 108 |
| Bpu14I | TTCGAA | 1 cut(s) | 95 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 52, 82, 158, 188 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 119 |
| Bse3DI | GCAATG | 1 cut(s) | 239 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 119 |
| BseMI | GCAATG | 1 cut(s) | 239 |
| BseMII | CTCAG | 1 cut(s) | 99 |
| BseRI | GAGGAG | 1 cut(s) | 60 |
| BslFI | GGGAC | 1 cut(s) | 250 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 119 |
| BsmFI | GGGAC | 1 cut(s) | 250 |
| Bsp119I | TTCGAA | 1 cut(s) | 95 |
| Bsp143I | GATC | 4 cut(s) | 86, 151, 249, 316 |
| BspCNI | CTCAG | 1 cut(s) | 100 |
| BspPI | GGATC | 1 cut(s) | 257 |
| BspT104I | TTCGAA | 1 cut(s) | 95 |
| BsrDI | GCAATG | 1 cut(s) | 239 |
| BssMI | GATC | 4 cut(s) | 86, 151, 249, 316 |
| BssSI | CACGAG | 1 cut(s) | 282 |
| Bst2BI | CACGAG | 1 cut(s) | 282 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 175 |
| BstBI | TTCGAA | 1 cut(s) | 95 |
| BstDEI | CTNAG | 2 cut(s) | 20, 108 |
| BstKTI | GATC | 4 cut(s) | 89, 154, 252, 319 |
| BstMBI | GATC | 4 cut(s) | 86, 151, 249, 316 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 175 |
| CaiI | CAGNNNCTG | 1 cut(s) | 11 |
| Csp6I | GTAC | 2 cut(s) | 115, 296 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 210, 245 |
| CviAII | CATG | 3 cut(s) | 90, 292, 336 |
| CviJI | RGCY | 3 cut(s) | 26, 112, 281 |
| CviKI_1 | RGCY | 3 cut(s) | 26, 112, 281 |
| CviQI | GTAC | 2 cut(s) | 115, 296 |
| DdeI | CTNAG | 2 cut(s) | 20, 108 |
| DpnI | GATC | 4 cut(s) | 88, 153, 251, 318 |
| DpnII | GATC | 4 cut(s) | 86, 151, 249, 316 |
| EcoT22I | ATGCAT | 1 cut(s) | 204 |
| FaeI | CATG | 3 cut(s) | 93, 295, 339 |
| FaiI | YATR | 8 cut(s) | 29, 91, 143, 160, 200, 204, 293, 337 |
| FaqI | GGGAC | 1 cut(s) | 250 |
| FatI | CATG | 3 cut(s) | 89, 291, 335 |
| Hin1II | CATG | 3 cut(s) | 93, 295, 339 |
| HinfI | GANTC | 1 cut(s) | 76 |
| HphI | GGTGA | 1 cut(s) | 314 |
| Hpy188I | TCNGA | 2 cut(s) | 13, 75 |
| Hpy188III | TCNNGA | 1 cut(s) | 284 |
| HpyAV | CCTTC | 1 cut(s) | 49 |
| HpyCH4IV | ACGT | 1 cut(s) | 181 |
| HpyCH4V | TGCA | 1 cut(s) | 202 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 175 |
| HpyF3I | CTNAG | 2 cut(s) | 20, 108 |
| HpySE526I | ACGT | 1 cut(s) | 181 |
| Hsp92II | CATG | 3 cut(s) | 93, 295, 339 |
| Kzo9I | GATC | 4 cut(s) | 86, 151, 249, 316 |
| LmnI | GCTCC | 1 cut(s) | 166 |
| LpnPI | CCDG | 1 cut(s) | 120 |
| MaeII | ACGT | 1 cut(s) | 181 |
| MaeIII | GTNAC | 2 cut(s) | 182, 217 |
| MalI | GATC | 4 cut(s) | 88, 153, 251, 318 |
| MboI | GATC | 4 cut(s) | 86, 151, 249, 316 |
| MboII | GAAGA | 3 cut(s) | 145, 271, 311 |
| MluCI | AATT | 2 cut(s) | 47, 124 |
| MlyI | GAGTC | 1 cut(s) | 70 |
| MnlI | CCTC | 4 cut(s) | 81, 123, 200, 280 |
| Mph1103I | ATGCAT | 1 cut(s) | 204 |
| MseI | TTAA | 1 cut(s) | 309 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 175 |
| NdeII | GATC | 4 cut(s) | 86, 151, 249, 316 |
| NlaIII | CATG | 3 cut(s) | 93, 295, 339 |
| NmuCI | GTSAC | 1 cut(s) | 182 |
| NsiI | ATGCAT | 1 cut(s) | 204 |
| NspV | TTCGAA | 1 cut(s) | 95 |
| PflFI | GACNNNGTC | 1 cut(s) | 7 |
| PleI | GAGTC | 1 cut(s) | 70 |
| PpsI | GAGTC | 1 cut(s) | 70 |
| PstNI | CAGNNNCTG | 1 cut(s) | 11 |
| PsyI | GACNNNGTC | 1 cut(s) | 7 |
| RsaI | GTAC | 2 cut(s) | 116, 297 |
| RsaNI | GTAC | 2 cut(s) | 115, 296 |
| SaqAI | TTAA | 1 cut(s) | 309 |
| Sau3AI | GATC | 4 cut(s) | 86, 151, 249, 316 |
| SchI | GAGTC | 1 cut(s) | 70 |
| SetI | ASST | 5 cut(s) | 28, 103, 184, 192, 283 |
| SfuI | TTCGAA | 1 cut(s) | 95 |
| Sse9I | AATT | 2 cut(s) | 47, 124 |
| TaiI | ACGT | 1 cut(s) | 184 |
| TaqI | TCGA | 4 cut(s) | 79, 95, 192, 207 |
| TasI | AATT | 2 cut(s) | 47, 124 |
| Tru1I | TTAA | 1 cut(s) | 309 |
| Tru9I | TTAA | 1 cut(s) | 309 |
| TseFI | GTSAC | 1 cut(s) | 182 |
| Tsp45I | GTSAC | 1 cut(s) | 182 |
| Tth111I | GACNNNGTC | 1 cut(s) | 7 |
| Zsp2I | ATGCAT | 1 cut(s) | 204 |