BEST Arabidopsis thaliana protein match is 3'-5' exonuclease domain-containing protein K homology domain-containing protein KH domain-containing protein (TAIR AT2G25910.2)
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0087751 RchiOBHm_Chr2g0088051 RchiOBHm_Chr2g0105621 RchiOBHm_Chr4g0441621 RchiOBHm_Chr7g0241891 |
| rosa_multiflora | Rmu_sc0024795.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00278210 Rroxscaffold_4G00278230 Rroxscaffold_5G00385410 Rroxscaffold_7G00177440 Rroxscaffold_7G00216970 |
| rosa_samantha | Rh2BG286600 Rh2BG436500 Rh2DG186600 Rh2DG282200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 36 |
| AciI | CCGC | 1 cut(s) | 6 |
| AclWI | GGATC | 1 cut(s) | 221 |
| AcsI | RAATTY | 2 cut(s) | 79, 241 |
| AcuI | CTGAAG | 1 cut(s) | 162 |
| AcyI | GRCGYC | 1 cut(s) | 63 |
| AgsI | TTSAA | 2 cut(s) | 208, 269 |
| AjnI | CCWGG | 1 cut(s) | 91 |
| AluBI | AGCT | 1 cut(s) | 176 |
| AluI | AGCT | 1 cut(s) | 176 |
| Alw26I | GTCTC | 1 cut(s) | 93 |
| AlwI | GGATC | 1 cut(s) | 221 |
| ApoI | RAATTY | 2 cut(s) | 79, 241 |
| AsuHPI | GGTGA | 2 cut(s) | 16, 65 |
| BanII | GRGCYC | 1 cut(s) | 107 |
| BceAI | ACGGC | 2 cut(s) | 17, 50 |
| BciT130I | CCWGG | 1 cut(s) | 93 |
| BcoDI | GTCTC | 1 cut(s) | 93 |
| BfaI | CTAG | 2 cut(s) | 201, 257 |
| Bme1390I | CCNGG | 1 cut(s) | 93 |
| BmrFI | CCNGG | 1 cut(s) | 93 |
| BmsI | GCATC | 1 cut(s) | 206 |
| BpmI | CTGGAG | 1 cut(s) | 75 |
| BsaHI | GRCGYC | 1 cut(s) | 63 |
| BseBI | CCWGG | 1 cut(s) | 93 |
| BseMII | CTCAG | 1 cut(s) | 228 |
| BsmAI | GTCTC | 1 cut(s) | 93 |
| BsmBI | CGTCTC | 1 cut(s) | 93 |
| Bsp1286I | GDGCHC | 1 cut(s) | 107 |
| Bsp143I | GATC | 2 cut(s) | 189, 226 |
| BspACI | CCGC | 1 cut(s) | 6 |
| BspCNI | CTCAG | 1 cut(s) | 229 |
| BspPI | GGATC | 1 cut(s) | 221 |
| BssMI | GATC | 2 cut(s) | 189, 226 |
| BssNI | GRCGYC | 1 cut(s) | 63 |
| Bst2UI | CCWGG | 1 cut(s) | 93 |
| Bst4CI | ACNGT | 1 cut(s) | 220 |
| BstACI | GRCGYC | 1 cut(s) | 63 |
| BstDEI | CTNAG | 2 cut(s) | 121, 237 |
| BstKTI | GATC | 2 cut(s) | 192, 229 |
| BstMAI | GTCTC | 1 cut(s) | 93 |
| BstMBI | GATC | 2 cut(s) | 189, 226 |
| BstNI | CCWGG | 1 cut(s) | 93 |
| BstNSI | RCATGY | 1 cut(s) | 52 |
| BstSCI | CCNGG | 1 cut(s) | 91 |
| BstX2I | RGATCY | 1 cut(s) | 226 |
| BstYI | RGATCY | 1 cut(s) | 226 |
| CseI | GACGC | 2 cut(s) | 10, 71 |
| CviAII | CATG | 4 cut(s) | 49, 193, 247, 274 |
| CviJI | RGCY | 3 cut(s) | 32, 105, 176 |
| CviKI_1 | RGCY | 3 cut(s) | 32, 105, 176 |
| DdeI | CTNAG | 2 cut(s) | 121, 237 |
| DpnI | GATC | 2 cut(s) | 191, 228 |
| DpnII | GATC | 2 cut(s) | 189, 226 |
| Eco24I | GRGCYC | 1 cut(s) | 107 |
| Eco57I | CTGAAG | 1 cut(s) | 162 |
| EcoRII | CCWGG | 1 cut(s) | 91 |
| EcoT38I | GRGCYC | 1 cut(s) | 107 |
| Esp3I | CGTCTC | 1 cut(s) | 93 |
| FaeI | CATG | 4 cut(s) | 52, 196, 250, 277 |
| FaiI | YATR | 6 cut(s) | 50, 135, 194, 248, 275, 282 |
| FatI | CATG | 4 cut(s) | 48, 192, 246, 273 |
| FblI | GTMKAC | 1 cut(s) | 36 |
| FriOI | GRGCYC | 1 cut(s) | 107 |
| FspBI | CTAG | 2 cut(s) | 201, 257 |
| GsuI | CTGGAG | 1 cut(s) | 75 |
| HgaI | GACGC | 2 cut(s) | 10, 71 |
| Hin1I | GRCGYC | 1 cut(s) | 63 |
| Hin1II | CATG | 4 cut(s) | 52, 196, 250, 277 |
| HincII | GTYRAC | 1 cut(s) | 37 |
| HindII | GTYRAC | 1 cut(s) | 37 |
| HinfI | GANTC | 2 cut(s) | 137, 251 |
| HphI | GGTGA | 2 cut(s) | 16, 65 |
| Hpy166II | GTNNAC | 1 cut(s) | 37 |
| Hpy188I | TCNGA | 1 cut(s) | 142 |
| Hpy8I | GTNNAC | 1 cut(s) | 37 |
| Hpy99I | CGWCG | 4 cut(s) | 38, 47, 62, 65 |
| HpyAV | CCTTC | 1 cut(s) | 19 |
| HpyCH4III | ACNGT | 1 cut(s) | 220 |
| HpyCH4V | TGCA | 1 cut(s) | 284 |
| HpyF3I | CTNAG | 2 cut(s) | 121, 237 |
| Hsp92I | GRCGYC | 1 cut(s) | 63 |
| Hsp92II | CATG | 4 cut(s) | 52, 196, 250, 277 |
| Kzo9I | GATC | 2 cut(s) | 189, 226 |
| LpnPI | CCDG | 3 cut(s) | 78, 105, 249 |
| LweI | GCATC | 1 cut(s) | 206 |
| MaeI | CTAG | 2 cut(s) | 201, 257 |
| MaeIII | GTNAC | 3 cut(s) | 22, 71, 116 |
| MalI | GATC | 2 cut(s) | 191, 228 |
| MboI | GATC | 2 cut(s) | 189, 226 |
| MboII | GAAGA | 1 cut(s) | 155 |
| MflI | RGATCY | 1 cut(s) | 226 |
| MhlI | GDGCHC | 1 cut(s) | 107 |
| MluCI | AATT | 3 cut(s) | 79, 147, 241 |
| MlyI | GAGTC | 1 cut(s) | 146 |
| MmeI | TCCRAC | 1 cut(s) | 202 |
| MnlI | CCTC | 2 cut(s) | 94, 118 |
| MspR9I | CCNGG | 1 cut(s) | 93 |
| MvaI | CCWGG | 1 cut(s) | 93 |
| NdeII | GATC | 2 cut(s) | 189, 226 |
| NlaIII | CATG | 4 cut(s) | 52, 196, 250, 277 |
| NmuCI | GTSAC | 3 cut(s) | 22, 71, 116 |
| NspI | RCATGY | 1 cut(s) | 52 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 42 |
| PfeI | GAWTC | 1 cut(s) | 251 |
| PleI | GAGTC | 1 cut(s) | 145 |
| PpsI | GAGTC | 1 cut(s) | 145 |
| Psp6I | CCWGG | 1 cut(s) | 91 |
| PspGI | CCWGG | 1 cut(s) | 91 |
| PsuI | RGATCY | 1 cut(s) | 226 |
| SalI | GTCGAC | 1 cut(s) | 35 |
| Sau3AI | GATC | 2 cut(s) | 189, 226 |
| SchI | GAGTC | 1 cut(s) | 146 |
| ScrFI | CCNGG | 1 cut(s) | 93 |
| SduI | GDGCHC | 1 cut(s) | 107 |
| SetI | ASST | 5 cut(s) | 78, 97, 129, 178, 266 |
| SfaNI | GCATC | 1 cut(s) | 206 |
| Sse9I | AATT | 3 cut(s) | 79, 147, 241 |
| SsiI | CCGC | 1 cut(s) | 6 |
| SspMI | CTAG | 2 cut(s) | 201, 257 |
| StyD4I | CCNGG | 1 cut(s) | 91 |
| TaaI | ACNGT | 1 cut(s) | 220 |
| TaqI | TCGA | 1 cut(s) | 36 |
| TasI | AATT | 3 cut(s) | 79, 147, 241 |
| TfiI | GAWTC | 1 cut(s) | 251 |
| TseFI | GTSAC | 3 cut(s) | 22, 71, 116 |
| Tsp45I | GTSAC | 3 cut(s) | 22, 71, 116 |
| TspDTI | ATGAA | 2 cut(s) | 126, 235 |
| XapI | RAATTY | 2 cut(s) | 79, 241 |
| XceI | RCATGY | 1 cut(s) | 52 |
| XmiI | GTMKAC | 1 cut(s) | 36 |
| XspI | CTAG | 2 cut(s) | 201, 257 |