Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0016436

Physical Location & Seq

Genomic Coordinates Reverse (-)

1280933 .. 1281593

Gene Structure 661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00278210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGCCCCGCCACAATGTCGCCGCCGTCGAGTCCGCCTCGGCTGTGCTCCTCCAATCCCTCGCGTACCTCCCACCGCACCACCGACCTCGGGTTCCGGCTCCGACGATCCGCACCAACCACCGCGTCGACGAGAAGGAGATGCCCGCCGTCATCAATAGCGTGACCAAAGCCGCCGACCGCCACGACATGCTATGCGACGACGCCGTTAGTCACCTCAATTCCTCATCTCCAGGACTACACTATATCAGCAGAACCTTAGATCACCGCATTGAAGCTGAGATAGGGTTTATGGGAACAGTAGTCTTAGTGCGCAAACTAGCTTCACCTAATTTAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0034657 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CLTH

Protein Analysis

112

Amino Acids

12.35

Weight (kDa)

7.11

Isoelectric Point (pI)

60.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016436)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0087751 RchiOBHm_Chr2g0088051 RchiOBHm_Chr2g0105621 RchiOBHm_Chr4g0441621 RchiOBHm_Chr7g0241891
rosa_multiflora	Rmu_sc0024795.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278210 Rroxscaffold_4G00278230 Rroxscaffold_5G00385410 Rroxscaffold_7G00177440 Rroxscaffold_7G00216970
rosa_samantha	Rh2BG286600 Rh2BG436500 Rh2DG186600 Rh2DG282200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	311
AccI	GTMKAC	1 cut(s)	126
AccII	CGCG	2 cut(s)	62, 123
AclWI	GGATC	1 cut(s)	100
AcyI	GRCGYC	1 cut(s)	201
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	88
AgsI	TTSAA	1 cut(s)	272
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	2 cut(s)	275, 320
AluI	AGCT	2 cut(s)	275, 320
Alw21I	GWGCWC	1 cut(s)	48
AlwI	GGATC	1 cut(s)	100
Ama87I	CYCGRG	1 cut(s)	87
AspLEI	GCGC	1 cut(s)	312
AsuHPI	GGTGA	3 cut(s)	203, 254, 315
AvaI	CYCGRG	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	48
BceAI	ACGGC	3 cut(s)	8, 131, 188
BciT130I	CCWGG	1 cut(s)	231
BfaI	CTAG	1 cut(s)	317
BisI	GCNGC	2 cut(s)	21, 171
BlsI	GCNGC	2 cut(s)	22, 172
Bme1390I	CCNGG	1 cut(s)	231
BmeT110I	CYCGRG	1 cut(s)	87
BmiI	GGNNCC	2 cut(s)	93, 99
BmrFI	CCNGG	1 cut(s)	231
BmsI	GCATC	1 cut(s)	129
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BpmI	CTGGAG	1 cut(s)	213
BsaHI	GRCGYC	1 cut(s)	201
BsaJI	CCNNGG	2 cut(s)	36, 86
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	36, 86
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMII	CTCAG	1 cut(s)	267
BseRI	GAGGAG	1 cut(s)	38
Bsh1236I	CGCG	2 cut(s)	62, 123
Bsh1285I	CGRYCG	1 cut(s)	178
BsiEI	CGRYCG	1 cut(s)	178
BsiHKAI	GWGCWC	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	95
BslI	CCNNNNNNNGG	1 cut(s)	88
BsoBI	CYCGRG	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	2 cut(s)	105, 259
BspCNI	CTCAG	1 cut(s)	268
BspFNI	CGCG	2 cut(s)	62, 123
BspLI	GGNNCC	2 cut(s)	93, 99
BspPI	GGATC	1 cut(s)	100
BssECI	CCNNGG	2 cut(s)	36, 86
BssMI	GATC	2 cut(s)	105, 259
BssNI	GRCGYC	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	1 cut(s)	298
BstACI	GRCGYC	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	144
BstDEI	CTNAG	3 cut(s)	256, 276, 304
BstFNI	CGCG	2 cut(s)	62, 123
BstHHI	GCGC	1 cut(s)	312
BstKTI	GATC	2 cut(s)	108, 262
BstMBI	GATC	2 cut(s)	105, 259
BstMCI	CGRYCG	1 cut(s)	178
BstNI	CCWGG	1 cut(s)	231
BstNSI	RCATGY	1 cut(s)	190
BstSCI	CCNGG	1 cut(s)	229
BstUI	CGCG	2 cut(s)	62, 123
Cac8I	GCNNGC	1 cut(s)	144
CfoI	GCGC	1 cut(s)	312
CseI	GACGC	2 cut(s)	112, 209
Csp6I	GTAC	1 cut(s)	64
CviAII	CATG	1 cut(s)	187
CviJI	RGCY	5 cut(s)	41, 98, 170, 275, 320
CviKI_1	RGCY	5 cut(s)	41, 98, 170, 275, 320
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	3 cut(s)	256, 276, 304
DpnI	GATC	2 cut(s)	107, 261
DpnII	GATC	2 cut(s)	105, 259
EciI	GGCGGA	1 cut(s)	22
Eco88I	CYCGRG	1 cut(s)	87
EcoRII	CCWGG	1 cut(s)	229
FaeI	CATG	1 cut(s)	190
FaiI	YATR	4 cut(s)	188, 193, 243, 290
FatI	CATG	1 cut(s)	186
FauI	CCCGC	2 cut(s)	14, 151
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	2 cut(s)	21, 171
Fsp4HI	GCNGC	2 cut(s)	21, 171
FspBI	CTAG	1 cut(s)	317
FspI	TGCGCA	1 cut(s)	311
GlaI	GCGC	1 cut(s)	311
GluI	GCNGC	2 cut(s)	21, 171
GsuI	CTGGAG	1 cut(s)	213
HapII	CCGG	1 cut(s)	95
HgaI	GACGC	2 cut(s)	112, 209
HhaI	GCGC	1 cut(s)	312
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	1 cut(s)	190
Hin6I	GCGC	1 cut(s)	310
HinP1I	GCGC	1 cut(s)	310
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	1 cut(s)	29
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	3 cut(s)	203, 254, 315
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	1 cut(s)	102
Hpy8I	GTNNAC	1 cut(s)	127
Hpy99I	CGWCG	6 cut(s)	29, 106, 128, 131, 200, 203
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	1 cut(s)	298
HpyF3I	CTNAG	3 cut(s)	256, 276, 304
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	1 cut(s)	190
HspAI	GCGC	1 cut(s)	310
Kzo9I	GATC	2 cut(s)	105, 259
LmnI	GCTCC	2 cut(s)	51, 103
LpnPI	CCDG	3 cut(s)	108, 216, 243
LweI	GCATC	1 cut(s)	129
MaeI	CTAG	1 cut(s)	317
MaeIII	GTNAC	2 cut(s)	160, 209
MalI	GATC	2 cut(s)	107, 261
MboI	GATC	2 cut(s)	105, 259
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	2 cut(s)	217, 328
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	125
MnlI	CCTC	7 cut(s)	46, 59, 68, 77, 96, 224, 232
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	231
MvnI	CGCG	2 cut(s)	62, 123
NdeII	GATC	2 cut(s)	105, 259
NlaIII	CATG	1 cut(s)	190
NlaIV	GGNNCC	2 cut(s)	93, 99
NmeAIII	GCCGAG	1 cut(s)	17
NmuCI	GTSAC	2 cut(s)	160, 209
NsbI	TGCGCA	1 cut(s)	311
NspI	RCATGY	1 cut(s)	190
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PfoI	TCCNGGA	1 cut(s)	229
PkrI	GCNGC	2 cut(s)	22, 172
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	2 cut(s)	93, 99
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
SalI	GTCGAC	1 cut(s)	125
SatI	GCNGC	2 cut(s)	21, 171
Sau3AI	GATC	2 cut(s)	105, 259
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	1 cut(s)	231
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	7 cut(s)	69, 88, 216, 257, 277, 322, 328
SfaNI	GCATC	1 cut(s)	129
SgrDI	CGTCGACG	1 cut(s)	125
Sse9I	AATT	2 cut(s)	217, 328
SspMI	CTAG	1 cut(s)	317
StyD4I	CCNGG	1 cut(s)	229
TaaI	ACNGT	1 cut(s)	298
TaqI	TCGA	2 cut(s)	27, 126
TasI	AATT	2 cut(s)	217, 328
TauI	GCSGC	2 cut(s)	23, 173
TseFI	GTSAC	2 cut(s)	160, 209
Tsp45I	GTSAC	2 cut(s)	160, 209
XceI	RCATGY	1 cut(s)	190
XmiI	GTMKAC	1 cut(s)	126
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.