Rmu_sc0024795.1_g000001

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0024795.1
OG0016436
Physical Location & Seq
Reverse (-)
1 .. 628
628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0024795.1_g000001.1.cds

Sequence Viewer

Length: 409 bp
atgttgaagaagaaatcagttttcttcgaattggagtactggaagtttttacctgttcgacacaatctagatgtcatgcatatcaagaagaatgtatgtgatgcaatcattggaacattgctgaacattcctgggaaaataaaagatggggtggctgctcgatttgatatggttgctatgggtatgaagttagctgatcatttctgttctaatgtgaggagtttagtgtcaatggaaaatcttcggcttgttggcatgaaatcgcatgattgcaatatagtgctccatgacttgctccccattgcaattcgttatgttttagataaaaagtcattgaccaagaagaaggagggtaagtcatcaacggcctccaaccccgaaaaacatggcttacagttgttaaagcgag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

136

Amino Acids

15.46

Weight (kDa)

9.77

Isoelectric Point (pI)

34.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 38
AgsI TTSAA 1 cut(s) 7
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
Alw21I GWGCWC 1 cut(s) 285
AoxI GGCC 1 cut(s) 366
ApeKI GCWGC 1 cut(s) 155
Asp700I GAANNNNTTC 1 cut(s) 240
AsuII TTCGAA 1 cut(s) 27
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 1 cut(s) 142
BccI CCATC 1 cut(s) 140
BceAI ACGGC 1 cut(s) 381
BciT130I CCWGG 1 cut(s) 132
BclI TGATCA 1 cut(s) 196
BfaI CTAG 1 cut(s) 68
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
BmcAI AGTACT 1 cut(s) 38
Bme1390I CCNGG 1 cut(s) 132
BmrFI CCNGG 1 cut(s) 132
BmsI GCATC 1 cut(s) 91
Bpu14I TTCGAA 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 131
BsaXI ACNNNNNCTCC 2 cut(s) 341, 371
Bse1I ACTGG 1 cut(s) 44
Bse3DI GCAATG 2 cut(s) 116, 300
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 131
BseMI GCAATG 2 cut(s) 116, 300
BseNI ACTGG 1 cut(s) 44
BseRI GAGGAG 1 cut(s) 232
BseXI GCAGC 1 cut(s) 142
BshFI GGCC 1 cut(s) 368
BsiHKAI GWGCWC 1 cut(s) 285
BsnI GGCC 1 cut(s) 368
Bsp119I TTCGAA 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 285
Bsp143I GATC 1 cut(s) 196
BspANI GGCC 1 cut(s) 368
BspT104I TTCGAA 1 cut(s) 27
BsrDI GCAATG 2 cut(s) 116, 300
BsrI ACTGG 1 cut(s) 44
BssECI CCNNGG 1 cut(s) 131
BssMI GATC 1 cut(s) 196
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 396
BstBI TTCGAA 1 cut(s) 27
BstKTI GATC 1 cut(s) 199
BstMBI GATC 1 cut(s) 196
BstNI CCWGG 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 130
BstV1I GCAGC 1 cut(s) 142
BsuRI GGCC 1 cut(s) 368
Csp6I GTAC 1 cut(s) 37
CviAII CATG 5 cut(s) 76, 256, 266, 287, 386
CviJI RGCY 5 cut(s) 155, 194, 247, 368, 390
CviKI_1 RGCY 5 cut(s) 155, 194, 247, 368, 390
CviQI GTAC 1 cut(s) 37
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
EcoRII CCWGG 1 cut(s) 130
EcoT22I ATGCAT 1 cut(s) 81
FaeI CATG 5 cut(s) 79, 259, 269, 290, 389
FatI CATG 5 cut(s) 75, 255, 265, 286, 385
FbaI TGATCA 1 cut(s) 196
Fnu4HI GCNGC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 1 cut(s) 68
GluI GCNGC 1 cut(s) 156
HaeIII GGCC 1 cut(s) 368
Hin1II CATG 5 cut(s) 79, 259, 269, 290, 389
Hpy188III TCNNGA 2 cut(s) 68, 85
HpyAV CCTTC 1 cut(s) 340
HpyCH4III ACNGT 1 cut(s) 396
HpyCH4V TGCA 4 cut(s) 79, 104, 273, 305
Hsp92II CATG 5 cut(s) 79, 259, 269, 290, 389
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 1 cut(s) 196
LmnI GCTCC 2 cut(s) 288, 300
LpnPI CCDG 4 cut(s) 25, 66, 117, 144
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 1 cut(s) 91
MaeI CTAG 1 cut(s) 68
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 6 cut(s) 16, 19, 22, 100, 233, 355
MhlI GDGCHC 1 cut(s) 285
MluCI AATT 2 cut(s) 29, 306
MmeI TCCRAC 1 cut(s) 396
MnlI CCTC 3 cut(s) 210, 343, 379
Mph1103I ATGCAT 1 cut(s) 81
MroXI GAANNNNTTC 1 cut(s) 240
MseI TTAA 1 cut(s) 401
MspR9I CCNGG 1 cut(s) 132
MvaI CCWGG 1 cut(s) 132
NdeII GATC 1 cut(s) 196
NlaIII CATG 5 cut(s) 79, 259, 269, 290, 389
NsiI ATGCAT 1 cut(s) 81
NspV TTCGAA 1 cut(s) 27
PdmI GAANNNNTTC 1 cut(s) 240
PkrI GCNGC 1 cut(s) 157
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
SaqAI TTAA 1 cut(s) 401
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 1 cut(s) 196
ScaI AGTACT 1 cut(s) 38
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 1 cut(s) 285
SetI ASST 2 cut(s) 55, 196
SfaNI GCATC 1 cut(s) 91
SfuI TTCGAA 1 cut(s) 27
Sse9I AATT 2 cut(s) 29, 306
SspMI CTAG 1 cut(s) 68
StyD4I CCNGG 1 cut(s) 130
TaaI ACNGT 1 cut(s) 396
TaqI TCGA 3 cut(s) 27, 58, 160
TasI AATT 2 cut(s) 29, 306
TatI WGTACW 1 cut(s) 36
Tru1I TTAA 1 cut(s) 401
Tru9I TTAA 1 cut(s) 401
TseI GCWGC 1 cut(s) 155
TspDTI ATGAA 2 cut(s) 200, 272
XbaI TCTAGA 1 cut(s) 67
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 1 cut(s) 68
ZrmI AGTACT 1 cut(s) 38
Zsp2I ATGCAT 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.