BEST Arabidopsis thaliana protein match is 3'-5' exonuclease domain-containing protein K homology domain-containing protein KH domain-containing protein (TAIR AT2G25910.2)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0087751 RchiOBHm_Chr2g0088051 RchiOBHm_Chr2g0105621 RchiOBHm_Chr4g0441621 RchiOBHm_Chr7g0241891 |
| rosa_multiflora | Rmu_sc0024795.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00278210 Rroxscaffold_4G00278230 Rroxscaffold_5G00385410 Rroxscaffold_7G00177440 Rroxscaffold_7G00216970 |
| rosa_samantha | Rh2BG286600 Rh2BG436500 Rh2DG186600 Rh2DG282200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 326 |
| AciI | CCGC | 2 cut(s) | 81, 324 |
| AclWI | GGATC | 2 cut(s) | 116, 212 |
| AcuI | CTGAAG | 1 cut(s) | 147 |
| AdeI | CACNNNGTG | 1 cut(s) | 309 |
| AgsI | TTSAA | 1 cut(s) | 199 |
| AluBI | AGCT | 2 cut(s) | 18, 331 |
| AluI | AGCT | 2 cut(s) | 18, 331 |
| Alw21I | GWGCWC | 1 cut(s) | 20 |
| AlwI | GGATC | 2 cut(s) | 116, 212 |
| AsuHPI | GGTGA | 3 cut(s) | 48, 54, 60 |
| BanII | GRGCYC | 1 cut(s) | 20 |
| Bbv12I | GWGCWC | 1 cut(s) | 20 |
| BccI | CCATC | 3 cut(s) | 67, 73, 79 |
| BfaI | CTAG | 2 cut(s) | 192, 340 |
| BisI | GCNGC | 1 cut(s) | 324 |
| BlpI | GCTNAGC | 1 cut(s) | 327 |
| BlsI | GCNGC | 1 cut(s) | 325 |
| BmsI | GCATC | 6 cut(s) | 92, 98, 104, 110, 197, 310 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 207, 239 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 327 |
| BseMII | CTCAG | 2 cut(s) | 187, 341 |
| BseRI | GAGGAG | 1 cut(s) | 290 |
| BsiHKAI | GWGCWC | 1 cut(s) | 20 |
| Bsp1286I | GDGCHC | 1 cut(s) | 20 |
| Bsp143I | GATC | 3 cut(s) | 121, 180, 217 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 327 |
| BspACI | CCGC | 2 cut(s) | 81, 324 |
| BspCNI | CTCAG | 2 cut(s) | 186, 340 |
| BspPI | GGATC | 2 cut(s) | 116, 212 |
| BsrBI | CCGCTC | 1 cut(s) | 326 |
| BssMI | GATC | 3 cut(s) | 121, 180, 217 |
| Bst4CI | ACNGT | 1 cut(s) | 211 |
| BstDEI | CTNAG | 2 cut(s) | 173, 327 |
| BstKTI | GATC | 3 cut(s) | 124, 183, 220 |
| BstMBI | GATC | 3 cut(s) | 121, 180, 217 |
| BstX2I | RGATCY | 2 cut(s) | 121, 217 |
| BstYI | RGATCY | 2 cut(s) | 121, 217 |
| CviAII | CATG | 3 cut(s) | 184, 238, 265 |
| CviJI | RGCY | 2 cut(s) | 18, 331 |
| CviKI_1 | RGCY | 2 cut(s) | 18, 331 |
| DdeI | CTNAG | 2 cut(s) | 173, 327 |
| DpnI | GATC | 3 cut(s) | 123, 182, 219 |
| DpnII | GATC | 3 cut(s) | 121, 180, 217 |
| DraIII | CACNNNGTG | 1 cut(s) | 309 |
| Ecl136II | GAGCTC | 1 cut(s) | 18 |
| Eco24I | GRGCYC | 1 cut(s) | 20 |
| Eco53kI | GAGCTC | 1 cut(s) | 18 |
| Eco57I | CTGAAG | 1 cut(s) | 147 |
| EcoICRI | GAGCTC | 1 cut(s) | 18 |
| EcoT38I | GRGCYC | 1 cut(s) | 20 |
| FaeI | CATG | 3 cut(s) | 187, 241, 268 |
| FaiI | YATR | 4 cut(s) | 185, 239, 266, 273 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 268, 300 |
| FatI | CATG | 3 cut(s) | 183, 237, 264 |
| FauI | CCCGC | 1 cut(s) | 88 |
| Fnu4HI | GCNGC | 1 cut(s) | 324 |
| FriOI | GRGCYC | 1 cut(s) | 20 |
| Fsp4HI | GCNGC | 1 cut(s) | 324 |
| FspBI | CTAG | 2 cut(s) | 192, 340 |
| GluI | GCNGC | 1 cut(s) | 324 |
| Hin1II | CATG | 3 cut(s) | 187, 241, 268 |
| HinfI | GANTC | 1 cut(s) | 242 |
| HphI | GGTGA | 3 cut(s) | 48, 54, 60 |
| Hpy166II | GTNNAC | 1 cut(s) | 139 |
| Hpy188I | TCNGA | 2 cut(s) | 31, 259 |
| Hpy188III | TCNNGA | 3 cut(s) | 8, 105, 125 |
| Hpy8I | GTNNAC | 1 cut(s) | 139 |
| HpyAV | CCTTC | 1 cut(s) | 294 |
| HpyCH4III | ACNGT | 1 cut(s) | 211 |
| HpyCH4V | TGCA | 6 cut(s) | 89, 95, 101, 251, 275, 290 |
| HpyF3I | CTNAG | 2 cut(s) | 173, 327 |
| Hsp92II | CATG | 3 cut(s) | 187, 241, 268 |
| Kzo9I | GATC | 3 cut(s) | 121, 180, 217 |
| LpnPI | CCDG | 5 cut(s) | 21, 90, 138, 240, 261 |
| LweI | GCATC | 6 cut(s) | 92, 98, 104, 110, 197, 310 |
| MaeI | CTAG | 2 cut(s) | 192, 340 |
| MalI | GATC | 3 cut(s) | 123, 182, 219 |
| MbiI | CCGCTC | 1 cut(s) | 326 |
| MboI | GATC | 3 cut(s) | 121, 180, 217 |
| MboII | GAAGA | 1 cut(s) | 140 |
| MflI | RGATCY | 2 cut(s) | 121, 217 |
| MhlI | GDGCHC | 1 cut(s) | 20 |
| MluCI | AATT | 2 cut(s) | 148, 334 |
| MmeI | TCCRAC | 1 cut(s) | 193 |
| MnlI | CCTC | 4 cut(s) | 127, 152, 308, 311 |
| MseI | TTAA | 1 cut(s) | 333 |
| NdeII | GATC | 3 cut(s) | 121, 180, 217 |
| NlaIII | CATG | 3 cut(s) | 187, 241, 268 |
| PfeI | GAWTC | 1 cut(s) | 242 |
| PkrI | GCNGC | 1 cut(s) | 325 |
| Psp124BI | GAGCTC | 1 cut(s) | 20 |
| PsuI | RGATCY | 2 cut(s) | 121, 217 |
| SacI | GAGCTC | 1 cut(s) | 20 |
| SaqAI | TTAA | 1 cut(s) | 333 |
| SatI | GCNGC | 1 cut(s) | 324 |
| Sau3AI | GATC | 3 cut(s) | 121, 180, 217 |
| SduI | GDGCHC | 1 cut(s) | 20 |
| SetI | ASST | 6 cut(s) | 20, 138, 144, 257, 286, 333 |
| SfaNI | GCATC | 6 cut(s) | 92, 98, 104, 110, 197, 310 |
| Sse9I | AATT | 2 cut(s) | 148, 334 |
| SsiI | CCGC | 2 cut(s) | 81, 324 |
| SspMI | CTAG | 2 cut(s) | 192, 340 |
| SstI | GAGCTC | 1 cut(s) | 20 |
| TaaI | ACNGT | 1 cut(s) | 211 |
| TaqI | TCGA | 3 cut(s) | 20, 74, 144 |
| TasI | AATT | 2 cut(s) | 148, 334 |
| TauI | GCSGC | 1 cut(s) | 326 |
| TfiI | GAWTC | 1 cut(s) | 242 |
| Tru1I | TTAA | 1 cut(s) | 333 |
| Tru9I | TTAA | 1 cut(s) | 333 |
| TspDTI | ATGAA | 1 cut(s) | 27 |
| TspGWI | ACGGA | 2 cut(s) | 33, 297 |
| XspI | CTAG | 2 cut(s) | 192, 340 |