Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0016436

Physical Location & Seq

Genomic Coordinates Reverse (-)

16646343 .. 16649520

Gene Structure 3178 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG186600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGAAGCCCTCACCAGCCTAAGCCCTAAACCGCCTGAAACGATGAGCAGCGCCGGCATCCGGATCCCCCGCCAAAATGTCGCCGCCGTCGAGTCCGCCTCGGCTGTACTCCTCCAATCCCTCGCGTACCTCCCACCGCACTACGGACCTCGGGTTCTAGCTCCGACGATCCGTGCCAACCACCGCCTCGACGAGAAGGAGATGTTCGCCGTCATCAATAGTGTGACCAAAGCGGCAGACCGCGACGACGCCGTTAGTCACCTCAATTCCTCGTCTCCAGGTTGCAGGGGACCAAACGAAAGCTGGAATAGGGGAGCAAGACTGAGCACTTACAGGCGCAGAGGTGAGTGCTTTGTTCTGTTTCTCATGAAATCTTTCCTGCATTTGAAAATTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0034657 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CLTH

Protein Analysis

132

Amino Acids

14.5

Weight (kDa)

9.82

Isoelectric Point (pI)

47.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016436)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0087751 RchiOBHm_Chr2g0088051 RchiOBHm_Chr2g0105621 RchiOBHm_Chr4g0441621 RchiOBHm_Chr7g0241891
rosa_multiflora	Rmu_sc0024795.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278210 Rroxscaffold_4G00278230 Rroxscaffold_5G00385410 Rroxscaffold_7G00177440 Rroxscaffold_7G00216970
rosa_samantha	Rh2BG286600 Rh2BG436500 Rh2DG186600 Rh2DG282200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	125, 243
AccIII	TCCGGA	1 cut(s)	60
AciI	CCGC	8 cut(s)	32, 70, 84, 96, 137, 184, 233, 241
AclWI	GGATC	3 cut(s)	58, 71, 163
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	2 cut(s)	108, 128
AfiI	CCNNNNNNNGG	2 cut(s)	60, 143
AgsI	TTSAA	1 cut(s)	388
AjnI	CCWGG	1 cut(s)	277
AloI	GAACNNNNNNTCC	2 cut(s)	138, 170
AluBI	AGCT	2 cut(s)	161, 303
AluI	AGCT	2 cut(s)	161, 303
Alw21I	GWGCWC	1 cut(s)	329
Alw26I	GTCTC	1 cut(s)	279
AlwI	GGATC	3 cut(s)	58, 71, 163
Ama87I	CYCGRG	1 cut(s)	150
Aor13HI	TCCGGA	1 cut(s)	60
ApeKI	GCWGC	1 cut(s)	48
Asp700I	GAANNNNTTC	1 cut(s)	374
AspLEI	GCGC	2 cut(s)	53, 339
AspS9I	GGNCC	2 cut(s)	146, 290
AsuHPI	GGTGA	3 cut(s)	4, 251, 356
AvaI	CYCGRG	1 cut(s)	150
AvaII	GGWCC	2 cut(s)	146, 290
BamHI	GGATCC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	329
BbvI	GCAGC	1 cut(s)	60
BceAI	ACGGC	3 cut(s)	71, 194, 236
BciT130I	CCWGG	1 cut(s)	279
BcoDI	GTCTC	1 cut(s)	279
BfaI	CTAG	1 cut(s)	158
BfoI	RGCGCY	1 cut(s)	54
BisI	GCNGC	3 cut(s)	49, 84, 234
BlsI	GCNGC	3 cut(s)	50, 85, 235
Bme1390I	CCNGG	1 cut(s)	279
Bme18I	GGWCC	2 cut(s)	146, 290
BmeT110I	CYCGRG	1 cut(s)	150
BmgT120I	GGNCC	2 cut(s)	146, 290
BmiI	GGNNCC	2 cut(s)	65, 291
BmrFI	CCNGG	1 cut(s)	279
BmsI	GCATC	1 cut(s)	66
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BpmI	CTGGAG	1 cut(s)	261
Bpu10I	CCTNAGC	1 cut(s)	20
BsaHI	GRCGYC	1 cut(s)	249
BsaJI	CCNNGG	2 cut(s)	99, 149
BsaWI	WCCGGW	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 143
Bse118I	RCCGGY	1 cut(s)	53
BseAI	TCCGGA	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	2 cut(s)	99, 149
BseGI	GGATG	1 cut(s)	57
BseLI	CCNNNNNNNGG	2 cut(s)	60, 143
BseMII	CTCAG	1 cut(s)	314
BseRI	GAGGAG	1 cut(s)	101
BseXI	GCAGC	1 cut(s)	60
Bsh1236I	CGCG	2 cut(s)	125, 243
BsiHKAI	GWGCWC	1 cut(s)	329
BsiHKCI	CYCGRG	1 cut(s)	150
BsiSI	CCGG	2 cut(s)	54, 61
BslFI	GGGAC	1 cut(s)	303
BslI	CCNNNNNNNGG	2 cut(s)	60, 143
BsmAI	GTCTC	1 cut(s)	279
BsmBI	CGTCTC	1 cut(s)	279
BsmFI	GGGAC	1 cut(s)	303
BsoBI	CYCGRG	1 cut(s)	150
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp13I	TCCGGA	1 cut(s)	60
Bsp143I	GATC	2 cut(s)	63, 168
BspACI	CCGC	8 cut(s)	32, 70, 84, 96, 137, 184, 233, 241
BspCNI	CTCAG	1 cut(s)	315
BspEI	TCCGGA	1 cut(s)	60
BspFNI	CGCG	2 cut(s)	125, 243
BspHI	TCATGA	1 cut(s)	366
BspLI	GGNNCC	2 cut(s)	65, 291
BspPI	GGATC	3 cut(s)	58, 71, 163
BsrFI	RCCGGY	1 cut(s)	53
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	2 cut(s)	99, 149
BssMI	GATC	2 cut(s)	63, 168
BssNI	GRCGYC	1 cut(s)	249
Bst2UI	CCWGG	1 cut(s)	279
BstACI	GRCGYC	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	2 cut(s)	20, 323
BstF5I	GGATG	1 cut(s)	57
BstFNI	CGCG	2 cut(s)	125, 243
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	2 cut(s)	53, 339
BstKTI	GATC	2 cut(s)	66, 171
BstMAI	GTCTC	1 cut(s)	279
BstMBI	GATC	2 cut(s)	63, 168
BstMWI	GCNNNNNNNGC	1 cut(s)	54
BstNI	CCWGG	1 cut(s)	279
BstSCI	CCNGG	1 cut(s)	277
BstUI	CGCG	2 cut(s)	125, 243
BstV1I	GCAGC	1 cut(s)	60
BstX2I	RGATCY	1 cut(s)	63
BstYI	RGATCY	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	57
Cac8I	GCNNGC	1 cut(s)	55
CciI	TCATGA	1 cut(s)	366
CfoI	GCGC	2 cut(s)	53, 339
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	2 cut(s)	146, 290
CseI	GACGC	1 cut(s)	257
Csp6I	GTAC	2 cut(s)	107, 127
CviAII	CATG	1 cut(s)	367
CviJI	RGCY	6 cut(s)	8, 18, 24, 104, 161, 303
CviKI_1	RGCY	6 cut(s)	8, 18, 24, 104, 161, 303
CviQI	GTAC	2 cut(s)	107, 127
DdeI	CTNAG	2 cut(s)	20, 323
DpnI	GATC	2 cut(s)	65, 170
DpnII	GATC	2 cut(s)	63, 168
EciI	GGCGGA	1 cut(s)	85
Eco47I	GGWCC	2 cut(s)	146, 290
Eco88I	CYCGRG	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	277
Esp3I	CGTCTC	1 cut(s)	279
FaeI	CATG	1 cut(s)	370
FaiI	YATR	1 cut(s)	368
FaqI	GGGAC	1 cut(s)	303
FatI	CATG	1 cut(s)	366
FauI	CCCGC	1 cut(s)	77
Fnu4HI	GCNGC	3 cut(s)	49, 84, 234
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	3 cut(s)	49, 84, 234
FspBI	CTAG	1 cut(s)	158
GlaI	GCGC	2 cut(s)	52, 338
GluI	GCNGC	3 cut(s)	49, 84, 234
GsuI	CTGGAG	1 cut(s)	261
HaeII	RGCGCY	1 cut(s)	54
HapII	CCGG	2 cut(s)	54, 61
HgaI	GACGC	1 cut(s)	257
HhaI	GCGC	2 cut(s)	53, 339
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	1 cut(s)	370
Hin6I	GCGC	2 cut(s)	51, 337
HinP1I	GCGC	2 cut(s)	51, 337
HinfI	GANTC	1 cut(s)	92
HpaII	CCGG	2 cut(s)	54, 61
HphI	GGTGA	3 cut(s)	4, 251, 356
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	2 cut(s)	61, 367
Hpy99I	CGWCG	5 cut(s)	92, 169, 194, 248, 251
HpyAV	CCTTC	1 cut(s)	190
HpyCH4V	TGCA	2 cut(s)	285, 382
HpyF10VI	GCNNNNNNNGC	1 cut(s)	54
HpyF3I	CTNAG	2 cut(s)	20, 323
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	1 cut(s)	370
HspAI	GCGC	2 cut(s)	51, 337
Kpn2I	TCCGGA	1 cut(s)	60
KroI	GCCGGC	1 cut(s)	53
KroNI	GCCGGC	1 cut(s)	55
Kzo9I	GATC	2 cut(s)	63, 168
LmnI	GCTCC	2 cut(s)	166, 314
Lsp1109I	GCAGC	1 cut(s)	60
LweI	GCATC	1 cut(s)	66
MaeI	CTAG	1 cut(s)	158
MaeIII	GTNAC	2 cut(s)	223, 257
MalI	GATC	2 cut(s)	65, 170
MboI	GATC	2 cut(s)	63, 168
MflI	RGATCY	1 cut(s)	63
MhlI	GDGCHC	1 cut(s)	329
MluCI	AATT	2 cut(s)	265, 390
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	1 cut(s)	188
MroI	TCCGGA	1 cut(s)	60
MroNI	GCCGGC	1 cut(s)	53
MroXI	GAANNNNTTC	1 cut(s)	374
MspI	CCGG	2 cut(s)	54, 61
MspR9I	CCNGG	1 cut(s)	279
MvaI	CCWGG	1 cut(s)	279
MvnI	CGCG	2 cut(s)	125, 243
MwoI	GCNNNNNNNGC	1 cut(s)	54
NaeI	GCCGGC	1 cut(s)	55
NdeII	GATC	2 cut(s)	63, 168
NgoMIV	GCCGGC	1 cut(s)	53
NlaIII	CATG	1 cut(s)	370
NlaIV	GGNNCC	2 cut(s)	65, 291
NmeAIII	GCCGAG	1 cut(s)	80
NmuCI	GTSAC	2 cut(s)	223, 257
PagI	TCATGA	1 cut(s)	366
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PdiI	GCCGGC	1 cut(s)	55
PdmI	GAANNNNTTC	1 cut(s)	374
PkrI	GCNGC	3 cut(s)	50, 85, 235
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	2 cut(s)	65, 291
PspPI	GGNCC	2 cut(s)	146, 290
PsuI	RGATCY	1 cut(s)	63
RsaI	GTAC	2 cut(s)	108, 128
RsaNI	GTAC	2 cut(s)	107, 127
SatI	GCNGC	3 cut(s)	49, 84, 234
Sau3AI	GATC	2 cut(s)	63, 168
Sau96I	GGNCC	2 cut(s)	146, 290
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	279
SduI	GDGCHC	1 cut(s)	329
SetI	ASST	7 cut(s)	132, 151, 163, 264, 283, 305, 346
SfaNI	GCATC	1 cut(s)	66
SinI	GGWCC	2 cut(s)	146, 290
Sse9I	AATT	2 cut(s)	265, 390
SsiI	CCGC	8 cut(s)	32, 70, 84, 96, 137, 184, 233, 241
SspMI	CTAG	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	277
TaqI	TCGA	2 cut(s)	90, 189
TasI	AATT	2 cut(s)	265, 390
TatI	WGTACW	1 cut(s)	106
TauI	GCSGC	2 cut(s)	86, 236
TseFI	GTSAC	2 cut(s)	223, 257
TseI	GCWGC	1 cut(s)	48
Tsp45I	GTSAC	2 cut(s)	223, 257
TspDTI	ATGAA	1 cut(s)	383
TspGWI	ACGGA	2 cut(s)	159, 161
VpaK11BI	GGWCC	2 cut(s)	146, 290
XcmI	CCANNNNNNNNNTGG	1 cut(s)	300
XmnI	GAANNNNTTC	1 cut(s)	374
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.