BEST Arabidopsis thaliana protein match is 3'-5' exonuclease domain-containing protein K homology domain-containing protein KH domain-containing protein (TAIR AT2G25910.2)
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0087751 RchiOBHm_Chr2g0088051 RchiOBHm_Chr2g0105621 RchiOBHm_Chr4g0441621 RchiOBHm_Chr7g0241891 |
| rosa_multiflora | Rmu_sc0024795.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00278210 Rroxscaffold_4G00278230 Rroxscaffold_5G00385410 Rroxscaffold_7G00177440 Rroxscaffold_7G00216970 |
| rosa_samantha | Rh2BG286600 Rh2BG436500 Rh2DG186600 Rh2DG282200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 236 |
| AccB1I | GGYRCC | 1 cut(s) | 236 |
| AclWI | GGATC | 1 cut(s) | 116 |
| AcuI | CTGAAG | 1 cut(s) | 15 |
| AfaI | GTAC | 1 cut(s) | 238 |
| AgsI | TTSAA | 2 cut(s) | 13, 57 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 22 |
| AjnI | CCWGG | 2 cut(s) | 229, 239 |
| AluBI | AGCT | 2 cut(s) | 50, 212 |
| AluI | AGCT | 2 cut(s) | 50, 212 |
| AlwI | GGATC | 1 cut(s) | 116 |
| AoxI | GGCC | 1 cut(s) | 269 |
| Asp718I | GGTACC | 1 cut(s) | 236 |
| BanI | GGYRCC | 1 cut(s) | 236 |
| BccI | CCATC | 1 cut(s) | 226 |
| BciT130I | CCWGG | 2 cut(s) | 231, 241 |
| BclI | TGATCA | 1 cut(s) | 84 |
| BfaI | CTAG | 1 cut(s) | 96 |
| Bme1390I | CCNGG | 2 cut(s) | 231, 241 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 22 |
| BmiI | GGNNCC | 1 cut(s) | 238 |
| BmrFI | CCNGG | 2 cut(s) | 231, 241 |
| BmsI | GCATC | 1 cut(s) | 101 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 111, 143 |
| BpuEI | CTTGAG | 1 cut(s) | 184 |
| BseBI | CCWGG | 2 cut(s) | 231, 241 |
| BshFI | GGCC | 1 cut(s) | 271 |
| BshNI | GGYRCC | 1 cut(s) | 236 |
| BsnI | GGCC | 1 cut(s) | 271 |
| Bsp143I | GATC | 2 cut(s) | 84, 121 |
| BspANI | GGCC | 1 cut(s) | 271 |
| BspLI | GGNNCC | 1 cut(s) | 238 |
| BspPI | GGATC | 1 cut(s) | 116 |
| BspT107I | GGYRCC | 1 cut(s) | 236 |
| BssMI | GATC | 2 cut(s) | 84, 121 |
| Bst2UI | CCWGG | 2 cut(s) | 231, 241 |
| Bst4CI | ACNGT | 2 cut(s) | 24, 115 |
| BstKTI | GATC | 2 cut(s) | 87, 124 |
| BstMBI | GATC | 2 cut(s) | 84, 121 |
| BstNI | CCWGG | 2 cut(s) | 231, 241 |
| BstSCI | CCNGG | 2 cut(s) | 229, 239 |
| BstX2I | RGATCY | 1 cut(s) | 121 |
| BstYI | RGATCY | 1 cut(s) | 121 |
| BsuRI | GGCC | 1 cut(s) | 271 |
| Csp6I | GTAC | 1 cut(s) | 237 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 184, 219 |
| CviAII | CATG | 3 cut(s) | 88, 142, 169 |
| CviJI | RGCY | 3 cut(s) | 50, 212, 271 |
| CviKI_1 | RGCY | 3 cut(s) | 50, 212, 271 |
| CviQI | GTAC | 1 cut(s) | 237 |
| DpnI | GATC | 2 cut(s) | 86, 123 |
| DpnII | GATC | 2 cut(s) | 84, 121 |
| DraI | TTTAAA | 1 cut(s) | 102 |
| DriI | GACNNNNNGTC | 1 cut(s) | 22 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 22 |
| Eco57I | CTGAAG | 1 cut(s) | 15 |
| EcoRII | CCWGG | 2 cut(s) | 229, 239 |
| FaeI | CATG | 3 cut(s) | 91, 145, 172 |
| FaiI | YATR | 9 cut(s) | 20, 43, 45, 47, 89, 143, 162, 170, 177 |
| FatI | CATG | 3 cut(s) | 87, 141, 168 |
| FbaI | TGATCA | 1 cut(s) | 84 |
| FspBI | CTAG | 1 cut(s) | 96 |
| HaeIII | GGCC | 1 cut(s) | 271 |
| Hin1II | CATG | 3 cut(s) | 91, 145, 172 |
| HinfI | GANTC | 1 cut(s) | 146 |
| Hpy166II | GTNNAC | 1 cut(s) | 27 |
| Hpy188I | TCNGA | 1 cut(s) | 259 |
| Hpy8I | GTNNAC | 1 cut(s) | 27 |
| HpyAV | CCTTC | 1 cut(s) | 19 |
| HpyCH4III | ACNGT | 2 cut(s) | 24, 115 |
| HpyCH4V | TGCA | 2 cut(s) | 155, 179 |
| Hsp92II | CATG | 3 cut(s) | 91, 145, 172 |
| KpnI | GGTACC | 1 cut(s) | 240 |
| Ksp22I | TGATCA | 1 cut(s) | 84 |
| Kzo9I | GATC | 2 cut(s) | 84, 121 |
| LpnPI | CCDG | 7 cut(s) | 165, 207, 216, 226, 243, 253, 253 |
| LweI | GCATC | 1 cut(s) | 101 |
| MaeI | CTAG | 1 cut(s) | 96 |
| MaeIII | GTNAC | 2 cut(s) | 34, 131 |
| MalI | GATC | 2 cut(s) | 86, 123 |
| MboI | GATC | 2 cut(s) | 84, 121 |
| MflI | RGATCY | 1 cut(s) | 121 |
| MluCI | AATT | 1 cut(s) | 189 |
| MmeI | TCCRAC | 1 cut(s) | 97 |
| MnlI | CCTC | 2 cut(s) | 72, 227 |
| MseI | TTAA | 1 cut(s) | 101 |
| MspR9I | CCNGG | 2 cut(s) | 231, 241 |
| MvaI | CCWGG | 2 cut(s) | 231, 241 |
| NdeII | GATC | 2 cut(s) | 84, 121 |
| NlaIII | CATG | 3 cut(s) | 91, 145, 172 |
| NlaIV | GGNNCC | 1 cut(s) | 238 |
| NmuCI | GTSAC | 1 cut(s) | 34 |
| PfeI | GAWTC | 1 cut(s) | 146 |
| Psp6I | CCWGG | 2 cut(s) | 229, 239 |
| PspGI | CCWGG | 2 cut(s) | 229, 239 |
| PspN4I | GGNNCC | 1 cut(s) | 238 |
| PsuI | RGATCY | 1 cut(s) | 121 |
| RsaI | GTAC | 1 cut(s) | 238 |
| RsaNI | GTAC | 1 cut(s) | 237 |
| SaqAI | TTAA | 1 cut(s) | 101 |
| Sau3AI | GATC | 2 cut(s) | 84, 121 |
| ScrFI | CCNGG | 2 cut(s) | 231, 241 |
| SetI | ASST | 5 cut(s) | 52, 161, 214, 238, 242 |
| SfaNI | GCATC | 1 cut(s) | 101 |
| SmlI | CTYRAG | 1 cut(s) | 199 |
| SmoI | CTYRAG | 1 cut(s) | 199 |
| Sse9I | AATT | 1 cut(s) | 189 |
| SspMI | CTAG | 1 cut(s) | 96 |
| StyD4I | CCNGG | 2 cut(s) | 229, 239 |
| TaaI | ACNGT | 2 cut(s) | 24, 115 |
| TasI | AATT | 1 cut(s) | 189 |
| TfiI | GAWTC | 1 cut(s) | 146 |
| Tru1I | TTAA | 1 cut(s) | 101 |
| Tru9I | TTAA | 1 cut(s) | 101 |
| TseFI | GTSAC | 1 cut(s) | 34 |
| Tsp45I | GTSAC | 1 cut(s) | 34 |
| TspDTI | ATGAA | 1 cut(s) | 177 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 237 |
| XspI | CTAG | 1 cut(s) | 96 |