Rroxscaffold_7G00177440

Transposase family tnp2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0016436
Physical Location & Seq
Forward (+)
16951114 .. 16954743
3630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00177440.1

Sequence Viewer

Length: 393 bp
ATGTTCGCGGTCATCAATAGCGTGACCAAAGCCGCAAACCGAGATGACATGCTCTGCGACGACGCCGTTAGTCACCTCAATTCCTCGTCTCCAGGTTACAGGGGCTCAAACGAAAGCTGGAATAGGGGAGCAAGACTGAGCACTTACAGGTGCAGAGTCTACAGCATGCTGTTTTGGTTCATTCTGATTCAGCCTCTTAATGATGGAAATGCTCCTGAGCAAACACAAGTTCTCCTTGTACGACATAACTTTGACGTAATGCATATTGAGAAGAATATGTGTCATGGTATTCTTGGTACACTTTTGAAATTGAAGGGGAAGTCTAAAGATGGTCTCAAGTCTCGTAAAGATCTGGAAGCTATGCAGATCAGACAAGATTTACACCCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_21

Protein Analysis

130

Amino Acids

14.8

Weight (kDa)

9.3

Isoelectric Point (pI)

35.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 159
AccII CGCG 1 cut(s) 8
AciI CCGC 2 cut(s) 8, 33
AcyI GRCGYC 1 cut(s) 63
AfaI GTAC 2 cut(s) 240, 298
AgsI TTSAA 2 cut(s) 307, 313
AjnI CCWGG 1 cut(s) 91
AluBI AGCT 2 cut(s) 117, 359
AluI AGCT 2 cut(s) 117, 359
Alw21I GWGCWC 1 cut(s) 143
Alw26I GTCTC 3 cut(s) 93, 338, 345
AsuHPI GGTGA 1 cut(s) 65
BanII GRGCYC 1 cut(s) 107
Bbv12I GWGCWC 1 cut(s) 143
BccI CCATC 2 cut(s) 197, 323
BceAI ACGGC 1 cut(s) 50
BciT130I CCWGG 1 cut(s) 93
BcoDI GTCTC 3 cut(s) 93, 338, 345
BfmI CTRYAG 1 cut(s) 160
BglII AGATCT 1 cut(s) 349
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
Bme1390I CCNGG 1 cut(s) 93
BmrFI CCNGG 1 cut(s) 93
BpmI CTGGAG 1 cut(s) 75
Bpu10I CCTNAGC 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 320
BsaHI GRCGYC 1 cut(s) 63
BsaI GGTCTC 1 cut(s) 338
BsaXI ACNNNNNCTCC 2 cut(s) 216, 246
BseBI CCWGG 1 cut(s) 93
BseMII CTCAG 2 cut(s) 128, 207
BsgI GTGCAG 1 cut(s) 172
Bsh1236I CGCG 1 cut(s) 8
BsiHKAI GWGCWC 1 cut(s) 143
BsmAI GTCTC 3 cut(s) 93, 338, 345
BsmBI CGTCTC 1 cut(s) 93
Bso31I GGTCTC 1 cut(s) 338
Bsp1286I GDGCHC 2 cut(s) 107, 143
Bsp143I GATC 2 cut(s) 349, 366
BspACI CCGC 2 cut(s) 8, 33
BspCNI CTCAG 2 cut(s) 129, 208
BspFNI CGCG 1 cut(s) 8
BspTNI GGTCTC 1 cut(s) 338
BssMI GATC 2 cut(s) 349, 366
BssNI GRCGYC 1 cut(s) 63
Bst2UI CCWGG 1 cut(s) 93
BstACI GRCGYC 1 cut(s) 63
BstC8I GCNNGC 1 cut(s) 167
BstDEI CTNAG 2 cut(s) 137, 216
BstFNI CGCG 1 cut(s) 8
BstKTI GATC 2 cut(s) 352, 369
BstMAI GTCTC 3 cut(s) 93, 338, 345
BstMBI GATC 2 cut(s) 349, 366
BstNI CCWGG 1 cut(s) 93
BstNSI RCATGY 2 cut(s) 52, 169
BstSCI CCNGG 1 cut(s) 91
BstSFI CTRYAG 1 cut(s) 160
BstUI CGCG 1 cut(s) 8
BstX2I RGATCY 1 cut(s) 349
BstYI RGATCY 1 cut(s) 349
Cac8I GCNNGC 1 cut(s) 167
CseI GACGC 1 cut(s) 71
Csp6I GTAC 2 cut(s) 239, 297
CviAII CATG 3 cut(s) 49, 166, 284
CviJI RGCY 5 cut(s) 32, 105, 117, 193, 359
CviKI_1 RGCY 5 cut(s) 32, 105, 117, 193, 359
CviQI GTAC 2 cut(s) 239, 297
DdeI CTNAG 2 cut(s) 137, 216
DpnI GATC 2 cut(s) 351, 368
DpnII GATC 2 cut(s) 349, 366
Eco24I GRGCYC 1 cut(s) 107
Eco31I GGTCTC 1 cut(s) 338
EcoRII CCWGG 1 cut(s) 91
EcoT22I ATGCAT 1 cut(s) 264
EcoT38I GRGCYC 1 cut(s) 107
Esp3I CGTCTC 1 cut(s) 93
FaeI CATG 3 cut(s) 52, 169, 287
FaiI YATR 7 cut(s) 50, 167, 246, 264, 278, 285, 362
FalI AAGNNNNNCTT 2 cut(s) 219, 251
FatI CATG 3 cut(s) 48, 165, 283
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 1 cut(s) 33
FriOI GRGCYC 1 cut(s) 107
Fsp4HI GCNGC 1 cut(s) 33
GluI GCNGC 1 cut(s) 33
GsuI CTGGAG 1 cut(s) 75
HgaI GACGC 1 cut(s) 71
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 3 cut(s) 52, 169, 287
HinfI GANTC 2 cut(s) 156, 187
HphI GGTGA 1 cut(s) 65
Hpy166II GTNNAC 2 cut(s) 160, 299
Hpy188I TCNGA 2 cut(s) 186, 371
Hpy188III TCNNGA 2 cut(s) 215, 353
Hpy8I GTNNAC 2 cut(s) 160, 299
Hpy99I CGWCG 2 cut(s) 62, 65
HpyAV CCTTC 1 cut(s) 307
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 3 cut(s) 153, 262, 364
HpyF3I CTNAG 2 cut(s) 137, 216
HpySE526I ACGT 1 cut(s) 255
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 3 cut(s) 52, 169, 287
Kzo9I GATC 2 cut(s) 349, 366
LmnI GCTCC 2 cut(s) 128, 217
LpnPI CCDG 7 cut(s) 78, 85, 103, 105, 133, 228, 338
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 3 cut(s) 22, 71, 95
MalI GATC 2 cut(s) 351, 368
MboI GATC 2 cut(s) 349, 366
MboII GAAGA 1 cut(s) 283
MflI RGATCY 1 cut(s) 349
MhlI GDGCHC 2 cut(s) 107, 143
MluCI AATT 2 cut(s) 79, 308
MlyI GAGTC 1 cut(s) 165
MnlI CCTC 3 cut(s) 86, 94, 204
Mph1103I ATGCAT 1 cut(s) 264
MseI TTAA 1 cut(s) 198
MspR9I CCNGG 1 cut(s) 93
MvaI CCWGG 1 cut(s) 93
MvnI CGCG 1 cut(s) 8
NdeII GATC 2 cut(s) 349, 366
NlaIII CATG 3 cut(s) 52, 169, 287
NmuCI GTSAC 2 cut(s) 22, 71
NsiI ATGCAT 1 cut(s) 264
NspI RCATGY 2 cut(s) 52, 169
PaeI GCATGC 1 cut(s) 169
PfeI GAWTC 1 cut(s) 187
PkrI GCNGC 1 cut(s) 34
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
Psp6I CCWGG 1 cut(s) 91
PspGI CCWGG 1 cut(s) 91
PsuI RGATCY 1 cut(s) 349
RsaI GTAC 2 cut(s) 240, 298
RsaNI GTAC 2 cut(s) 239, 297
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 1 cut(s) 33
Sau3AI GATC 2 cut(s) 349, 366
SchI GAGTC 1 cut(s) 165
ScrFI CCNGG 1 cut(s) 93
SduI GDGCHC 2 cut(s) 107, 143
SetI ASST 6 cut(s) 78, 97, 119, 152, 258, 361
SfcI CTRYAG 1 cut(s) 160
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
SphI GCATGC 1 cut(s) 169
Sse9I AATT 2 cut(s) 79, 308
SsiI CCGC 2 cut(s) 8, 33
StyD4I CCNGG 1 cut(s) 91
TaiI ACGT 1 cut(s) 258
TasI AATT 2 cut(s) 79, 308
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 1 cut(s) 187
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TseFI GTSAC 2 cut(s) 22, 71
Tsp45I GTSAC 2 cut(s) 22, 71
TspDTI ATGAA 1 cut(s) 169
XceI RCATGY 2 cut(s) 52, 169
XmiI GTMKAC 1 cut(s) 159
Zsp2I ATGCAT 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.