Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0016436

Physical Location & Seq

Genomic Coordinates Forward (+)

32131952 .. 32144570

Gene Structure 12619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG282200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGCTTGATTCCGGAAAGTTTGTGCTGTATAATGACACTTTTTTTGTCATATGGGAGAGCTTTGATTTCCCAACTGATACAATACTGGGAGGCCAAGATTTGCCGACGTCCATGGGTCTGGTATCTAGTGCATCTGTTGCAGACCACTCCAGCGGGCAATTTTTCCTGGAGATGCAGGATGATGGAAACCTTGTGGCCTACCCGCCAAACAGTTCTTCTGCTTATTGGGCTACTATGACCTCCGGTAGTTACCAACTTAGTCTCAACCTATCAGGCTTTCTCGTTTTGAGTAGCCAATCCAGTAGTCTGACTACTCAGCGCCAGCATCGGATCCCCCGCCACAATGTCGTCACGGTCAAGCATGTCCCGCTCAACCGCTTGGCCGACGGTAGGATCGAGTCCTCCTCGACTGTGCTCCTCCAATCCCTCGCGTACCTCCCACCGCACCACCTACCTCAGGTTCCGGCTCCGACGATCCCCGCCAACCACCGCGTCACCGAGAAGGAGATGTCCGCCTTCATCAACAGCGTCACCAAAGCCGTCGACCGCGACGACATGCTCTGCGACGACGCCGTTAGTCACCTCAATTCCTCGTCTCCAGGTTGTAGGGGCTCAAACGAAAGCTGGAATAGGAGAGTAAGACTGAGCACTTACAGGTGCAGAGGTGAGTGCTCTGTTCAGTTTCTCATGAAATCTTTCCTGCATTTGAAAATTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

239

Amino Acids

26.43

Weight (kDa)

6.49

Isoelectric Point (pI)

45.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016436)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0087751 RchiOBHm_Chr2g0088051 RchiOBHm_Chr2g0105621 RchiOBHm_Chr4g0441621 RchiOBHm_Chr7g0241891
rosa_multiflora	Rmu_sc0024795.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278210 Rroxscaffold_4G00278230 Rroxscaffold_5G00385410 Rroxscaffold_7G00177440 Rroxscaffold_7G00216970
rosa_samantha	Rh2BG286600 Rh2BG436500 Rh2DG186600 Rh2DG282200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	110
AccBSI	CCGCTC	1 cut(s)	370
AccI	GTMKAC	1 cut(s)	543
AccII	CGCG	3 cut(s)	431, 492, 549
AccIII	TCCGGA	1 cut(s)	11
AclWI	GGATC	4 cut(s)	325, 338, 401, 469
AcoI	YGGCCR	1 cut(s)	381
AcyI	GRCGYC	2 cut(s)	107, 570
AfaI	GTAC	1 cut(s)	434
AfiI	CCNNNNNNNGG	2 cut(s)	390, 457
AgsI	TTSAA	1 cut(s)	709
AjnI	CCWGG	2 cut(s)	165, 598
AjuI	GAANNNNNNNTTGG	2 cut(s)	199, 231
AluBI	AGCT	2 cut(s)	60, 624
AluI	AGCT	2 cut(s)	60, 624
Alw21I	GWGCWC	3 cut(s)	417, 650, 674
Alw26I	GTCTC	2 cut(s)	266, 600
AlwI	GGATC	4 cut(s)	325, 338, 401, 469
Aor13HI	TCCGGA	1 cut(s)	11
AoxI	GGCC	3 cut(s)	91, 195, 381
ArsI	GACNNNNNNTTYG	2 cut(s)	26, 58
Asp700I	GAANNNNTTC	1 cut(s)	695
AspLEI	GCGC	1 cut(s)	321
AsuHPI	GGTGA	4 cut(s)	487, 523, 572, 677
AxyI	CCTNAGG	1 cut(s)	456
BamHI	GGATCC	1 cut(s)	330
BanII	GRGCYC	1 cut(s)	614
Bbv12I	GWGCWC	3 cut(s)	417, 650, 674
BccI	CCATC	1 cut(s)	176
BceAI	ACGGC	2 cut(s)	524, 557
BciT130I	CCWGG	2 cut(s)	167, 600
BcoDI	GTCTC	2 cut(s)	266, 600
BfaI	CTAG	1 cut(s)	126
BfoI	RGCGCY	1 cut(s)	322
Bme1390I	CCNGG	2 cut(s)	167, 600
BmiI	GGNNCC	3 cut(s)	332, 462, 468
BmrFI	CCNGG	2 cut(s)	167, 600
BmrI	ACTGGG	1 cut(s)	95
BmsI	GCATC	3 cut(s)	140, 162, 334
BmuI	ACTGGG	1 cut(s)	95
BplI	GAGNNNNNCTC	2 cut(s)	389, 421
BpmI	CTGGAG	3 cut(s)	133, 188, 582
BsaHI	GRCGYC	2 cut(s)	107, 570
BsaJI	CCNNGG	1 cut(s)	111
BsaWI	WCCGGW	2 cut(s)	11, 242
Bsc4I	CCNNNNNNNGG	2 cut(s)	390, 457
Bse1I	ACTGG	2 cut(s)	90, 300
Bse21I	CCTNAGG	1 cut(s)	456
BseAI	TCCGGA	1 cut(s)	11
BseBI	CCWGG	2 cut(s)	167, 600
BseDI	CCNNGG	1 cut(s)	111
BseGI	GGATG	1 cut(s)	184
BseLI	CCNNNNNNNGG	2 cut(s)	390, 457
BseMII	CTCAG	3 cut(s)	329, 470, 635
BseNI	ACTGG	2 cut(s)	90, 300
BseRI	GAGGAG	2 cut(s)	394, 407
BsgI	GTGCAG	1 cut(s)	679
Bsh1236I	CGCG	3 cut(s)	431, 492, 549
Bsh1285I	CGRYCG	1 cut(s)	547
BshFI	GGCC	3 cut(s)	93, 197, 383
BsiEI	CGRYCG	1 cut(s)	547
BsiHKAI	GWGCWC	3 cut(s)	417, 650, 674
BsiSI	CCGG	3 cut(s)	12, 243, 464
BslFI	GGGAC	1 cut(s)	350
BslI	CCNNNNNNNGG	2 cut(s)	390, 457
BsmAI	GTCTC	2 cut(s)	266, 600
BsmBI	CGTCTC	1 cut(s)	600
BsmFI	GGGAC	1 cut(s)	350
BsnI	GGCC	3 cut(s)	93, 197, 383
Bsp1286I	GDGCHC	4 cut(s)	417, 614, 650, 674
Bsp13I	TCCGGA	1 cut(s)	11
Bsp143I	GATC	3 cut(s)	330, 393, 474
Bsp19I	CCATGG	1 cut(s)	111
BspANI	GGCC	3 cut(s)	93, 197, 383
BspCNI	CTCAG	3 cut(s)	328, 469, 636
BspEI	TCCGGA	1 cut(s)	11
BspFNI	CGCG	3 cut(s)	431, 492, 549
BspHI	TCATGA	1 cut(s)	687
BspLI	GGNNCC	3 cut(s)	332, 462, 468
BspPI	GGATC	4 cut(s)	325, 338, 401, 469
BsrBI	CCGCTC	1 cut(s)	370
BsrI	ACTGG	2 cut(s)	90, 300
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	3 cut(s)	330, 393, 474
BssNI	GRCGYC	2 cut(s)	107, 570
BssT1I	CCWWGG	1 cut(s)	111
Bst2UI	CCWGG	2 cut(s)	167, 600
Bst4CI	ACNGT	4 cut(s)	212, 355, 389, 412
BstACI	GRCGYC	2 cut(s)	107, 570
BstAPI	GCANNNNNTGC	1 cut(s)	137
BstC8I	GCNNGC	2 cut(s)	155, 323
BstDEI	CTNAG	4 cut(s)	257, 315, 456, 644
BstDSI	CCRYGG	1 cut(s)	111
BstENI	CCTNNNNNAGG	1 cut(s)	455
BstF5I	GGATG	1 cut(s)	184
BstFNI	CGCG	3 cut(s)	431, 492, 549
BstH2I	RGCGCY	1 cut(s)	322
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	3 cut(s)	333, 396, 477
BstMAI	GTCTC	2 cut(s)	266, 600
BstMBI	GATC	3 cut(s)	330, 393, 474
BstMCI	CGRYCG	1 cut(s)	547
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 227, 367
BstNI	CCWGG	2 cut(s)	167, 600
BstNSI	RCATGY	2 cut(s)	365, 559
BstSCI	CCNGG	2 cut(s)	165, 598
BstUI	CGCG	3 cut(s)	431, 492, 549
BstX2I	RGATCY	1 cut(s)	330
BstXI	CCANNNNNNTGG	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	330
Bsu36I	CCTNAGG	1 cut(s)	456
BsuRI	GGCC	3 cut(s)	93, 197, 383
BtgI	CCRYGG	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	184
Cac8I	GCNNGC	2 cut(s)	155, 323
CciI	TCATGA	1 cut(s)	687
CfoI	GCGC	1 cut(s)	321
CseI	GACGC	3 cut(s)	481, 517, 578
Csp6I	GTAC	1 cut(s)	433
CviAII	CATG	4 cut(s)	112, 362, 556, 688
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	4 cut(s)	257, 315, 456, 644
DpnI	GATC	3 cut(s)	332, 395, 476
DpnII	GATC	3 cut(s)	330, 393, 474
EaeI	YGGCCR	1 cut(s)	381
EciI	GGCGGA	1 cut(s)	502
Eco130I	CCWWGG	1 cut(s)	111
Eco24I	GRGCYC	1 cut(s)	614
Eco81I	CCTNAGG	1 cut(s)	456
EcoNI	CCTNNNNNAGG	1 cut(s)	455
EcoRII	CCWGG	2 cut(s)	165, 598
EcoT14I	CCWWGG	1 cut(s)	111
EcoT38I	GRGCYC	1 cut(s)	614
ErhI	CCWWGG	1 cut(s)	111
Esp3I	CGTCTC	1 cut(s)	600
FaeI	CATG	4 cut(s)	115, 365, 559, 691
FaiI	YATR	8 cut(s)	30, 50, 52, 113, 236, 363, 557, 689
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	4 cut(s)	111, 361, 555, 687
FauI	CCCGC	5 cut(s)	146, 210, 344, 375, 487
FauNDI	CATATG	1 cut(s)	50
FblI	GTMKAC	1 cut(s)	543
FokI	GGATG	1 cut(s)	191
FriOI	GRGCYC	1 cut(s)	614
FspBI	CTAG	1 cut(s)	126
GlaI	GCGC	1 cut(s)	320
GsuI	CTGGAG	3 cut(s)	133, 188, 582
HaeII	RGCGCY	1 cut(s)	322
HaeIII	GGCC	3 cut(s)	93, 197, 383
HapII	CCGG	3 cut(s)	12, 243, 464
HgaI	GACGC	3 cut(s)	481, 517, 578
HhaI	GCGC	1 cut(s)	321
Hin1I	GRCGYC	2 cut(s)	107, 570
Hin1II	CATG	4 cut(s)	115, 365, 559, 691
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HincII	GTYRAC	1 cut(s)	544
HindII	GTYRAC	1 cut(s)	544
HinfI	GANTC	2 cut(s)	8, 398
HpaII	CCGG	3 cut(s)	12, 243, 464
HphI	GGTGA	4 cut(s)	487, 523, 572, 677
Hpy166II	GTNNAC	1 cut(s)	544
Hpy188I	TCNGA	3 cut(s)	309, 330, 471
Hpy188III	TCNNGA	2 cut(s)	12, 688
Hpy8I	GTNNAC	1 cut(s)	544
Hpy99I	CGWCG	7 cut(s)	109, 389, 475, 545, 554, 569, 572
HpyAV	CCTTC	2 cut(s)	496, 526
HpyCH4III	ACNGT	4 cut(s)	212, 355, 389, 412
HpyCH4IV	ACGT	1 cut(s)	107
HpyCH4V	TGCA	5 cut(s)	131, 140, 175, 660, 703
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 227, 367
HpyF3I	CTNAG	4 cut(s)	257, 315, 456, 644
HpySE526I	ACGT	1 cut(s)	107
Hsp92I	GRCGYC	2 cut(s)	107, 570
Hsp92II	CATG	4 cut(s)	115, 365, 559, 691
HspAI	GCGC	1 cut(s)	319
Kpn2I	TCCGGA	1 cut(s)	11
Kzo9I	GATC	3 cut(s)	330, 393, 474
LmnI	GCTCC	2 cut(s)	420, 472
LweI	GCATC	3 cut(s)	140, 162, 334
MaeI	CTAG	1 cut(s)	126
MaeII	ACGT	1 cut(s)	107
MaeIII	GTNAC	5 cut(s)	248, 349, 493, 529, 578
MalI	GATC	3 cut(s)	332, 395, 476
MbiI	CCGCTC	1 cut(s)	370
MboI	GATC	3 cut(s)	330, 393, 474
MboII	GAAGA	1 cut(s)	207
MflI	RGATCY	1 cut(s)	330
MhlI	GDGCHC	4 cut(s)	417, 614, 650, 674
MluCI	AATT	3 cut(s)	158, 586, 711
MlyI	GAGTC	1 cut(s)	407
MmeI	TCCRAC	1 cut(s)	494
MroI	TCCGGA	1 cut(s)	11
MroXI	GAANNNNTTC	1 cut(s)	695
MspA1I	CMGCKG	1 cut(s)	153
MspI	CCGG	3 cut(s)	12, 243, 464
MspR9I	CCNGG	2 cut(s)	167, 600
MvaI	CCWGG	2 cut(s)	167, 600
MvnI	CGCG	3 cut(s)	431, 492, 549
MwoI	GCNNNNNNNGC	3 cut(s)	137, 227, 367
NcoI	CCATGG	1 cut(s)	111
NdeI	CATATG	1 cut(s)	50
NdeII	GATC	3 cut(s)	330, 393, 474
NlaIII	CATG	4 cut(s)	115, 365, 559, 691
NlaIV	GGNNCC	3 cut(s)	332, 462, 468
NmuCI	GTSAC	4 cut(s)	349, 493, 529, 578
NspI	RCATGY	2 cut(s)	365, 559
PagI	TCATGA	1 cut(s)	687
PcsI	WCGNNNNNNNCGW	2 cut(s)	393, 549
PdmI	GAANNNNTTC	1 cut(s)	695
PfeI	GAWTC	1 cut(s)	8
PfoI	TCCNGGA	1 cut(s)	165
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
Psp6I	CCWGG	2 cut(s)	165, 598
PspGI	CCWGG	2 cut(s)	165, 598
PspN4I	GGNNCC	3 cut(s)	332, 462, 468
PsuI	RGATCY	1 cut(s)	330
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
SalI	GTCGAC	1 cut(s)	542
Sau3AI	GATC	3 cut(s)	330, 393, 474
SchI	GAGTC	1 cut(s)	407
ScrFI	CCNGG	2 cut(s)	167, 600
SduI	GDGCHC	4 cut(s)	417, 614, 650, 674
SfaNI	GCATC	3 cut(s)	140, 162, 334
Sse9I	AATT	3 cut(s)	158, 586, 711
SspMI	CTAG	1 cut(s)	126
StyD4I	CCNGG	2 cut(s)	165, 598
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	4 cut(s)	212, 355, 389, 412
TaiI	ACGT	1 cut(s)	110
TaqI	TCGA	3 cut(s)	396, 407, 543
TasI	AATT	3 cut(s)	158, 586, 711
TfiI	GAWTC	1 cut(s)	8
TseFI	GTSAC	4 cut(s)	349, 493, 529, 578
Tsp45I	GTSAC	4 cut(s)	349, 493, 529, 578
TspDTI	ATGAA	2 cut(s)	508, 704
XagI	CCTNNNNNAGG	1 cut(s)	455
XceI	RCATGY	2 cut(s)	365, 559
XmiI	GTMKAC	1 cut(s)	543
XmnI	GAANNNNTTC	1 cut(s)	695
XspI	CTAG	1 cut(s)	126
ZraI	GACGTC	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.