Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0016436

Physical Location & Seq

Genomic Coordinates Forward (+)

67582533 .. 67585837

Gene Structure 3305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00216970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTCACCGCTTAAAACTAAATTTTCCCACCGCGCCACCGACCTAGGGGTTCCGGCTCCGACGATCCGCGCCAACCACGGCGTTTCCGAGAAGGAGATGTCGGCCGTCATCAACGGCGTCACAGAAGCCGCCGACCGCGACGACGTCAATGCGAATGTCTCTCGTCGATCAACAACAACAACAAGCTGCGAGATCAAAGCCGTCTCCTTTGCTCTCGCTCTCGTCTCTCGTCAATCAACGAAGAAGCGAGAAGAGGAGTTAGGGTCGAAACGGAGGACTGCGGCGTACTCAATCTTGGTTATACGGCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0034657 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CLTH

Protein Analysis

103

Amino Acids

11.19

Weight (kDa)

10.0

Isoelectric Point (pI)

72.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016436)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0087751 RchiOBHm_Chr2g0088051 RchiOBHm_Chr2g0105621 RchiOBHm_Chr4g0441621 RchiOBHm_Chr7g0241891
rosa_multiflora	Rmu_sc0024795.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278210 Rroxscaffold_4G00278230 Rroxscaffold_5G00385410 Rroxscaffold_7G00177440 Rroxscaffold_7G00216970
rosa_samantha	Rh2BG286600 Rh2BG436500 Rh2DG186600 Rh2DG282200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	147
AccII	CGCG	3 cut(s)	33, 69, 138
AciI	CCGC	6 cut(s)	8, 31, 67, 129, 136, 281
AclWI	GGATC	1 cut(s)	58
AcoI	YGGCCR	2 cut(s)	102, 305
AcsI	RAATTY	1 cut(s)	20
AcyI	GRCGYC	2 cut(s)	117, 144
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	1 cut(s)	45
AluBI	AGCT	1 cut(s)	186
AluI	AGCT	1 cut(s)	186
Alw26I	GTCTC	3 cut(s)	163, 208, 229
AlwI	GGATC	1 cut(s)	58
AoxI	GGCC	2 cut(s)	102, 305
ApeKI	GCWGC	1 cut(s)	186
ApoI	RAATTY	1 cut(s)	20
AspA2I	CCTAGG	1 cut(s)	43
AspLEI	GCGC	2 cut(s)	35, 71
AvrII	CCTAGG	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	173
BceAI	ACGGC	5 cut(s)	89, 94, 130, 185, 292
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BcoDI	GTCTC	3 cut(s)	163, 208, 229
BfaI	CTAG	1 cut(s)	44
BisI	GCNGC	3 cut(s)	129, 187, 282
BlnI	CCTAGG	1 cut(s)	43
BlsI	GCNGC	3 cut(s)	130, 188, 283
BmiI	GGNNCC	2 cut(s)	51, 57
BsaHI	GRCGYC	2 cut(s)	117, 144
BsaJI	CCNNGG	2 cut(s)	43, 76
BsaXI	ACNNNNNCTCC	2 cut(s)	248, 278
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
BseDI	CCNNGG	2 cut(s)	43, 76
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseRI	GAGGAG	1 cut(s)	269
BseX3I	CGGCCG	2 cut(s)	102, 305
BseXI	GCAGC	1 cut(s)	173
Bsh1236I	CGCG	3 cut(s)	33, 69, 138
Bsh1285I	CGRYCG	3 cut(s)	105, 136, 308
BshFI	GGCC	2 cut(s)	104, 307
BsiEI	CGRYCG	3 cut(s)	105, 136, 308
BsiSI	CCGG	1 cut(s)	53
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmAI	GTCTC	3 cut(s)	163, 208, 229
BsmBI	CGTCTC	2 cut(s)	208, 229
BsnI	GGCC	2 cut(s)	104, 307
Bsp143I	GATC	3 cut(s)	63, 167, 192
BspACI	CCGC	6 cut(s)	8, 31, 67, 129, 136, 281
BspANI	GGCC	2 cut(s)	104, 307
BspFNI	CGCG	3 cut(s)	33, 69, 138
BspLI	GGNNCC	2 cut(s)	51, 57
BspPI	GGATC	1 cut(s)	58
BssECI	CCNNGG	2 cut(s)	43, 76
BssMI	GATC	3 cut(s)	63, 167, 192
BssNI	GRCGYC	2 cut(s)	117, 144
BssT1I	CCWWGG	1 cut(s)	43
Bst6I	CTCTTC	1 cut(s)	246
BstACI	GRCGYC	2 cut(s)	117, 144
BstDSI	CCRYGG	1 cut(s)	76
BstFNI	CGCG	3 cut(s)	33, 69, 138
BstHHI	GCGC	2 cut(s)	35, 71
BstKTI	GATC	3 cut(s)	66, 170, 195
BstMAI	GTCTC	3 cut(s)	163, 208, 229
BstMBI	GATC	3 cut(s)	63, 167, 192
BstMCI	CGRYCG	3 cut(s)	105, 136, 308
BstUI	CGCG	3 cut(s)	33, 69, 138
BstV1I	GCAGC	1 cut(s)	173
BstZI	CGGCCG	2 cut(s)	102, 305
BsuRI	GGCC	2 cut(s)	104, 307
BtgI	CCRYGG	1 cut(s)	76
CfoI	GCGC	2 cut(s)	35, 71
CseI	GACGC	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	286
CviJI	RGCY	6 cut(s)	56, 104, 128, 186, 200, 307
CviKI_1	RGCY	6 cut(s)	56, 104, 128, 186, 200, 307
CviQI	GTAC	1 cut(s)	286
DpnI	GATC	3 cut(s)	65, 169, 194
DpnII	GATC	3 cut(s)	63, 167, 192
EaeI	YGGCCR	2 cut(s)	102, 305
EagI	CGGCCG	2 cut(s)	102, 305
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
EclXI	CGGCCG	2 cut(s)	102, 305
Eco130I	CCWWGG	1 cut(s)	43
Eco52I	CGGCCG	2 cut(s)	102, 305
EcoT14I	CCWWGG	1 cut(s)	43
ErhI	CCWWGG	1 cut(s)	43
Esp3I	CGTCTC	2 cut(s)	208, 229
FaiI	YATR	1 cut(s)	302
Fnu4HI	GCNGC	3 cut(s)	129, 187, 282
Fsp4HI	GCNGC	3 cut(s)	129, 187, 282
FspBI	CTAG	1 cut(s)	44
GlaI	GCGC	2 cut(s)	34, 70
GluI	GCNGC	3 cut(s)	129, 187, 282
HaeIII	GGCC	2 cut(s)	104, 307
HapII	CCGG	1 cut(s)	53
HgaI	GACGC	1 cut(s)	106
HhaI	GCGC	2 cut(s)	35, 71
Hin1I	GRCGYC	2 cut(s)	117, 144
Hin6I	GCGC	2 cut(s)	33, 69
HinP1I	GCGC	2 cut(s)	33, 69
HpaII	CCGG	1 cut(s)	53
Hpy188I	TCNGA	2 cut(s)	60, 88
Hpy99I	CGWCG	4 cut(s)	64, 143, 146, 168
HpyAV	CCTTC	1 cut(s)	85
HpyCH4IV	ACGT	1 cut(s)	144
HpySE526I	ACGT	1 cut(s)	144
Hsp92I	GRCGYC	2 cut(s)	117, 144
HspAI	GCGC	2 cut(s)	33, 69
Kzo9I	GATC	3 cut(s)	63, 167, 192
LmnI	GCTCC	1 cut(s)	61
LpnPI	CCDG	1 cut(s)	66
Lsp1109I	GCAGC	1 cut(s)	173
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	2 cut(s)	3, 118
MalI	GATC	3 cut(s)	65, 169, 194
MboI	GATC	3 cut(s)	63, 167, 192
MboII	GAAGA	2 cut(s)	253, 263
MluCI	AATT	1 cut(s)	20
MmeI	TCCRAC	1 cut(s)	83
MnlI	CCTC	2 cut(s)	247, 267
MseI	TTAA	1 cut(s)	12
MspI	CCGG	1 cut(s)	53
MvnI	CGCG	3 cut(s)	33, 69, 138
NdeII	GATC	3 cut(s)	63, 167, 192
NlaIV	GGNNCC	2 cut(s)	51, 57
NmuCI	GTSAC	2 cut(s)	3, 118
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PflFI	GACNNNGTC	1 cut(s)	143
PkrI	GCNGC	3 cut(s)	130, 188, 283
PspN4I	GGNNCC	2 cut(s)	51, 57
PsyI	GACNNNGTC	1 cut(s)	143
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	3 cut(s)	129, 187, 282
Sau3AI	GATC	3 cut(s)	63, 167, 192
SetI	ASST	3 cut(s)	45, 147, 188
Sse9I	AATT	1 cut(s)	20
SsiI	CCGC	6 cut(s)	8, 31, 67, 129, 136, 281
SspMI	CTAG	1 cut(s)	44
StyI	CCWWGG	1 cut(s)	43
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	2 cut(s)	166, 266
TasI	AATT	1 cut(s)	20
TauI	GCSGC	2 cut(s)	131, 284
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TseFI	GTSAC	2 cut(s)	3, 118
TseI	GCWGC	1 cut(s)	186
Tsp45I	GTSAC	2 cut(s)	3, 118
TspGWI	ACGGA	1 cut(s)	286
Tth111I	GACNNNGTC	1 cut(s)	143
XapI	RAATTY	1 cut(s)	20
XmaJI	CCTAGG	1 cut(s)	43
XspI	CTAG	1 cut(s)	44
ZraI	GACGTC	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.