Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0016436

Physical Location & Seq

Genomic Coordinates Reverse (-)

1288783 .. 1292902

Gene Structure 4120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00278230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGCCCCGCCACAATGTCGCCGCCGTCGAGTCCGCCTCGGCTGTGCTCCTCCAATCCCTCGCGTACCTCCCACCGCACCACCGACCTCGGGTTCCGGCTCCGACGATCCGCACCAACCACCGCGTCGACGAGAAGGAGATGCCCGCCGTCATCAATAGCGTGACCAAAGCCGCCGACCGCCACGACATGCTATGCGACGACGCCGTTAGTCACCTCAATTCCTCATCTCCAGGTTGCAGGGGCTCAAACGAAAGTTCAGAAACAAGTGCTCTTATAAATCAACAAGTGAGCCTTGTACTCGACCTTCAGATTCCAGGCCTCTCTCTCTCTCTCGCTGTCTCAATCTCAAACACGCATGTACAAATTTGTTATTGCACTCCTGATTGTTTCTCTTATGATTCAATCATAAATGCAACCCAACCCCCAACCCCCCGCGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0034657 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CLTH

Protein Analysis

146

Amino Acids

15.72

Weight (kDa)

6.12

Isoelectric Point (pI)

49.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016436)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0087751 RchiOBHm_Chr2g0088051 RchiOBHm_Chr2g0105621 RchiOBHm_Chr4g0441621 RchiOBHm_Chr7g0241891
rosa_multiflora	Rmu_sc0024795.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278210 Rroxscaffold_4G00278230 Rroxscaffold_5G00385410 Rroxscaffold_7G00177440 Rroxscaffold_7G00216970
rosa_samantha	Rh2BG286600 Rh2BG436500 Rh2DG186600 Rh2DG282200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	275
AccI	GTMKAC	1 cut(s)	126
AccII	CGCG	3 cut(s)	62, 123, 435
AclWI	GGATC	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	363
AcuI	CTGAAG	1 cut(s)	290
AcyI	GRCGYC	1 cut(s)	201
AfaI	GTAC	3 cut(s)	65, 297, 360
AfiI	CCNNNNNNNGG	1 cut(s)	88
AgsI	TTSAA	1 cut(s)	402
AjnI	CCWGG	2 cut(s)	229, 313
Alw21I	GWGCWC	2 cut(s)	48, 271
Alw26I	GTCTC	1 cut(s)	343
AlwI	GGATC	1 cut(s)	100
Ama87I	CYCGRG	1 cut(s)	87
AoxI	GGCC	1 cut(s)	316
ApoI	RAATTY	1 cut(s)	363
AsuHPI	GGTGA	1 cut(s)	203
AvaI	CYCGRG	1 cut(s)	87
BanII	GRGCYC	1 cut(s)	245
BarI	GAAGNNNNNNTAC	2 cut(s)	288, 320
Bbv12I	GWGCWC	2 cut(s)	48, 271
BceAI	ACGGC	3 cut(s)	8, 131, 188
BciT130I	CCWGG	2 cut(s)	231, 315
BcoDI	GTCTC	1 cut(s)	343
BisI	GCNGC	2 cut(s)	21, 171
BlsI	GCNGC	2 cut(s)	22, 172
Bme1390I	CCNGG	2 cut(s)	231, 315
BmeT110I	CYCGRG	1 cut(s)	87
BmiI	GGNNCC	2 cut(s)	93, 99
BmrFI	CCNGG	2 cut(s)	231, 315
BmsI	GCATC	1 cut(s)	129
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BpmI	CTGGAG	1 cut(s)	213
BsaHI	GRCGYC	1 cut(s)	201
BsaJI	CCNNGG	3 cut(s)	36, 86, 433
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
BseBI	CCWGG	2 cut(s)	231, 315
BseDI	CCNNGG	3 cut(s)	36, 86, 433
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseRI	GAGGAG	1 cut(s)	38
Bsh1236I	CGCG	3 cut(s)	62, 123, 435
Bsh1285I	CGRYCG	1 cut(s)	178
BshFI	GGCC	1 cut(s)	318
BsiEI	CGRYCG	1 cut(s)	178
BsiHKAI	GWGCWC	2 cut(s)	48, 271
BsiHKCI	CYCGRG	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	95
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmAI	GTCTC	1 cut(s)	343
BsnI	GGCC	1 cut(s)	318
BsoBI	CYCGRG	1 cut(s)	87
Bsp1286I	GDGCHC	3 cut(s)	48, 245, 271
Bsp1407I	TGTACA	1 cut(s)	358
Bsp143I	GATC	1 cut(s)	105
BspANI	GGCC	1 cut(s)	318
BspFNI	CGCG	3 cut(s)	62, 123, 435
BspLI	GGNNCC	2 cut(s)	93, 99
BspPI	GGATC	1 cut(s)	100
BsrGI	TGTACA	1 cut(s)	358
BssECI	CCNNGG	3 cut(s)	36, 86, 433
BssMI	GATC	1 cut(s)	105
BssNI	GRCGYC	1 cut(s)	201
Bst2UI	CCWGG	2 cut(s)	231, 315
BstACI	GRCGYC	1 cut(s)	201
BstAUI	TGTACA	1 cut(s)	358
BstC8I	GCNNGC	1 cut(s)	144
BstDSI	CCRYGG	1 cut(s)	433
BstFNI	CGCG	3 cut(s)	62, 123, 435
BstKTI	GATC	1 cut(s)	108
BstMAI	GTCTC	1 cut(s)	343
BstMBI	GATC	1 cut(s)	105
BstMCI	CGRYCG	1 cut(s)	178
BstNI	CCWGG	2 cut(s)	231, 315
BstNSI	RCATGY	2 cut(s)	190, 359
BstSCI	CCNGG	2 cut(s)	229, 313
BstUI	CGCG	3 cut(s)	62, 123, 435
BsuRI	GGCC	1 cut(s)	318
BtgI	CCRYGG	1 cut(s)	433
Cac8I	GCNNGC	1 cut(s)	144
Cfr42I	CCGCGG	1 cut(s)	436
CseI	GACGC	2 cut(s)	112, 209
Csp6I	GTAC	3 cut(s)	64, 296, 359
CviAII	CATG	2 cut(s)	187, 356
CviJI	RGCY	6 cut(s)	41, 98, 170, 243, 291, 318
CviKI_1	RGCY	6 cut(s)	41, 98, 170, 243, 291, 318
CviQI	GTAC	3 cut(s)	64, 296, 359
DpnI	GATC	1 cut(s)	107
DpnII	GATC	1 cut(s)	105
EciI	GGCGGA	1 cut(s)	22
Eco147I	AGGCCT	1 cut(s)	318
Eco24I	GRGCYC	1 cut(s)	245
Eco57I	CTGAAG	1 cut(s)	290
Eco88I	CYCGRG	1 cut(s)	87
EcoRII	CCWGG	2 cut(s)	229, 313
EcoT38I	GRGCYC	1 cut(s)	245
FaeI	CATG	2 cut(s)	190, 359
FaiI	YATR	6 cut(s)	188, 193, 275, 357, 396, 407
FalI	AAGNNNNNCTT	2 cut(s)	276, 308
FatI	CATG	2 cut(s)	186, 355
FauI	CCCGC	2 cut(s)	14, 151
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	2 cut(s)	21, 171
FriOI	GRGCYC	1 cut(s)	245
Fsp4HI	GCNGC	2 cut(s)	21, 171
GluI	GCNGC	2 cut(s)	21, 171
GsuI	CTGGAG	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	318
HapII	CCGG	1 cut(s)	95
HgaI	GACGC	2 cut(s)	112, 209
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	2 cut(s)	190, 359
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	3 cut(s)	29, 310, 398
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	1 cut(s)	203
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	3 cut(s)	102, 259, 309
Hpy188III	TCNNGA	1 cut(s)	380
Hpy8I	GTNNAC	1 cut(s)	127
Hpy99I	CGWCG	6 cut(s)	29, 106, 128, 131, 200, 203
HpyAV	CCTTC	2 cut(s)	127, 314
HpyCH4V	TGCA	3 cut(s)	237, 375, 413
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	2 cut(s)	190, 359
KspI	CCGCGG	1 cut(s)	436
Kzo9I	GATC	1 cut(s)	105
LmnI	GCTCC	2 cut(s)	51, 103
LpnPI	CCDG	7 cut(s)	108, 216, 223, 243, 300, 327, 393
LweI	GCATC	1 cut(s)	129
MaeIII	GTNAC	2 cut(s)	160, 209
MalI	GATC	1 cut(s)	107
MboI	GATC	1 cut(s)	105
MhlI	GDGCHC	3 cut(s)	48, 245, 271
MluCI	AATT	2 cut(s)	217, 363
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	125
MnlI	CCTC	8 cut(s)	46, 59, 68, 77, 96, 224, 232, 329
MspA1I	CMGCKG	1 cut(s)	435
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	2 cut(s)	231, 315
MvaI	CCWGG	2 cut(s)	231, 315
MvnI	CGCG	3 cut(s)	62, 123, 435
NdeII	GATC	1 cut(s)	105
NlaIII	CATG	2 cut(s)	190, 359
NlaIV	GGNNCC	2 cut(s)	93, 99
NmeAIII	GCCGAG	1 cut(s)	17
NmuCI	GTSAC	2 cut(s)	160, 209
NspI	RCATGY	2 cut(s)	190, 359
PceI	AGGCCT	1 cut(s)	318
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PfeI	GAWTC	2 cut(s)	310, 398
PkrI	GCNGC	2 cut(s)	22, 172
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PsiI	TTATAA	1 cut(s)	275
Psp6I	CCWGG	2 cut(s)	229, 313
PspGI	CCWGG	2 cut(s)	229, 313
PspN4I	GGNNCC	2 cut(s)	93, 99
RsaI	GTAC	3 cut(s)	65, 297, 360
RsaNI	GTAC	3 cut(s)	64, 296, 359
SacII	CCGCGG	1 cut(s)	436
SalI	GTCGAC	1 cut(s)	125
SatI	GCNGC	2 cut(s)	21, 171
Sau3AI	GATC	1 cut(s)	105
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	2 cut(s)	231, 315
SduI	GDGCHC	3 cut(s)	48, 245, 271
SetI	ASST	5 cut(s)	69, 88, 216, 235, 306
SfaNI	GCATC	1 cut(s)	129
Sfr303I	CCGCGG	1 cut(s)	436
SgrBI	CCGCGG	1 cut(s)	436
SgrDI	CGTCGACG	1 cut(s)	125
Sse9I	AATT	2 cut(s)	217, 363
SseBI	AGGCCT	1 cut(s)	318
StuI	AGGCCT	1 cut(s)	318
StyD4I	CCNGG	2 cut(s)	229, 313
TaqI	TCGA	3 cut(s)	27, 126, 300
TasI	AATT	2 cut(s)	217, 363
TatI	WGTACW	2 cut(s)	295, 358
TauI	GCSGC	2 cut(s)	23, 173
TfiI	GAWTC	2 cut(s)	310, 398
TseFI	GTSAC	2 cut(s)	160, 209
Tsp45I	GTSAC	2 cut(s)	160, 209
XapI	RAATTY	1 cut(s)	363
XceI	RCATGY	2 cut(s)	190, 359
XmiI	GTMKAC	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.