RchiOBHm_Chr2g0088451

Signal recognition particle 54 kDa protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0016992
Physical Location & Seq
Forward (+)
2992797 .. 2995848
3052 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46377

Sequence Viewer

Length: 627 bp
ATGACAATGGGGCTAGATTTGCAGAAGCTGTACAGAAGTTGGGAAGATAATCTGGGCGTTGGTTTTATTGCATTGAAGGTAAAAGTGCCTGTATATACAGCAGGGACTGACACCAAACCTTCACAAATAGCTAGGCAAGGTTTAGAGGAGGCCAAAAAGAAGAACATAGATCTAGTAATAATGGATACTGCTGGAAGGCTTCAGATAGACAAAGTACTGATGGATGAGTTGAAAGAAGTAAAGTGGGAATTGAACCCCACAGGAAACTTTACTCATTGTGGATGCAATGACTGGCCAGGAAGCTGCAGAAAATCCCTGGTCACAACATTCAATGTAGAGATTGGGATTACTGGCGCTATTTTAACAAAGCTGGATGGAGATTCTAAAGGTGGAGCAGCTTTGAGTGTTAAAGAGGTTTACTTGTGTAAAGCAAGGACAGCAGCTGCAATCAAAGTTCCAAAGTTTCAATTTGAGGAAGGAATTATAGAGACCACATACCTTCAAGAAGAAGTCAATGAACTCCATGATGGGAAGAATTCGTTAGCGATAAGTATCTTTAGACTTTTACAATGTGGATCTTCATCAATTGTATGGTTTAACTCTGTACCTAGTGAAACTTCTTTGTAG

Protein Analysis

208

Amino Acids

22.9

Weight (kDa)

5.79

Isoelectric Point (pI)

29.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP54 PF00448 23 - 138 7.8e-27 SRP54-type protein, GTPase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 583
AcoI YGGCCR 1 cut(s) 293
AcsI RAATTY 1 cut(s) 535
AcuI CTGAAG 1 cut(s) 185
AfaI GTAC 3 cut(s) 32, 216, 606
AgsI TTSAA 6 cut(s) 76, 232, 253, 331, 467, 503
AjnI CCWGG 2 cut(s) 295, 315
AluBI AGCT 6 cut(s) 28, 131, 303, 370, 398, 443
AluI AGCT 6 cut(s) 28, 131, 303, 370, 398, 443
Alw26I GTCTC 1 cut(s) 482
AlwI GGATC 1 cut(s) 583
AlwNI CAGNNNCTG 3 cut(s) 28, 107, 443
AoxI GGCC 2 cut(s) 150, 293
ApeKI GCWGC 4 cut(s) 303, 395, 440, 443
ApoI RAATTY 1 cut(s) 535
AspLEI GCGC 1 cut(s) 356
BalI TGGCCA 1 cut(s) 295
BbvI GCAGC 4 cut(s) 290, 407, 430, 452
BccI CCATC 3 cut(s) 214, 368, 521
BciT130I CCWGG 2 cut(s) 297, 317
BciVI GTATCC 1 cut(s) 178
BcoDI GTCTC 1 cut(s) 482
BfaI CTAG 4 cut(s) 14, 132, 173, 609
BfmI CTRYAG 1 cut(s) 304
BfoI RGCGCY 1 cut(s) 357
BfuI GTATCC 1 cut(s) 178
BglII AGATCT 1 cut(s) 169
BisI GCNGC 4 cut(s) 304, 396, 441, 444
BlsI GCNGC 4 cut(s) 305, 397, 442, 445
BmcAI AGTACT 1 cut(s) 216
Bme1390I CCNGG 2 cut(s) 297, 317
BmrFI CCNGG 2 cut(s) 297, 317
BmsI GCATC 1 cut(s) 272
BsaBI GATNNNNATC 2 cut(s) 551, 580
BsaI GGTCTC 1 cut(s) 482
BsaJI CCNNGG 1 cut(s) 315
Bse1I ACTGG 2 cut(s) 296, 355
Bse3DI GCAATG 1 cut(s) 292
Bse8I GATNNNNATC 2 cut(s) 551, 580
BseBI CCWGG 2 cut(s) 297, 317
BseDI CCNNGG 1 cut(s) 315
BseGI GGATG 3 cut(s) 229, 287, 379
BseJI GATNNNNATC 2 cut(s) 551, 580
BseMI GCAATG 1 cut(s) 292
BseNI ACTGG 2 cut(s) 296, 355
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 4 cut(s) 290, 407, 430, 452
BshFI GGCC 2 cut(s) 152, 295
BslFI GGGAC 1 cut(s) 118
BsmAI GTCTC 1 cut(s) 482
BsmFI GGGAC 1 cut(s) 118
BsnI GGCC 2 cut(s) 152, 295
Bso31I GGTCTC 1 cut(s) 482
Bsp1407I TGTACA 1 cut(s) 30
Bsp143I GATC 2 cut(s) 169, 575
BspANI GGCC 2 cut(s) 152, 295
BspMAI CTGCAG 1 cut(s) 308
BspPI GGATC 1 cut(s) 583
BspTNI GGTCTC 1 cut(s) 482
BsrDI GCAATG 1 cut(s) 292
BsrGI TGTACA 1 cut(s) 30
BsrI ACTGG 2 cut(s) 296, 355
BssECI CCNNGG 1 cut(s) 315
BssMI GATC 2 cut(s) 169, 575
Bst2UI CCWGG 2 cut(s) 297, 317
BstAUI TGTACA 1 cut(s) 30
BstF5I GGATG 3 cut(s) 229, 287, 379
BstH2I RGCGCY 1 cut(s) 357
BstHHI GCGC 1 cut(s) 356
BstKTI GATC 2 cut(s) 172, 578
BstMAI GTCTC 1 cut(s) 482
BstMBI GATC 2 cut(s) 169, 575
BstMWI GCNNNNNNNGC 2 cut(s) 19, 437
BstNI CCWGG 2 cut(s) 297, 317
BstSCI CCNGG 2 cut(s) 295, 315
BstSFI CTRYAG 1 cut(s) 304
BstV1I GCAGC 4 cut(s) 290, 407, 430, 452
BstX2I RGATCY 2 cut(s) 169, 575
BstYI RGATCY 2 cut(s) 169, 575
BsuI GTATCC 1 cut(s) 178
BsuRI GGCC 2 cut(s) 152, 295
BtsCI GGATG 3 cut(s) 229, 287, 379
CaiI CAGNNNCTG 3 cut(s) 28, 107, 443
CfoI GCGC 1 cut(s) 356
Csp6I GTAC 3 cut(s) 31, 215, 605
CviAII CATG 1 cut(s) 524
CviQI GTAC 3 cut(s) 31, 215, 605
DpnI GATC 2 cut(s) 171, 577
DpnII GATC 2 cut(s) 169, 575
EaeI YGGCCR 1 cut(s) 293
Eco31I GGTCTC 1 cut(s) 482
Eco57I CTGAAG 1 cut(s) 185
EcoRI GAATTC 1 cut(s) 535
EcoRII CCWGG 2 cut(s) 295, 315
FaeI CATG 1 cut(s) 527
FaiI YATR 7 cut(s) 94, 96, 167, 485, 496, 525, 592
FaqI GGGAC 1 cut(s) 118
FatI CATG 1 cut(s) 523
Fnu4HI GCNGC 4 cut(s) 304, 396, 441, 444
FokI GGATG 3 cut(s) 236, 294, 386
Fsp4HI GCNGC 4 cut(s) 304, 396, 441, 444
FspBI CTAG 4 cut(s) 14, 132, 173, 609
GlaI GCGC 1 cut(s) 355
GluI GCNGC 4 cut(s) 304, 396, 441, 444
HaeII RGCGCY 1 cut(s) 357
HaeIII GGCC 2 cut(s) 152, 295
HhaI GCGC 1 cut(s) 356
Hin1II CATG 1 cut(s) 527
Hin6I GCGC 1 cut(s) 354
HinP1I GCGC 1 cut(s) 354
HinfI GANTC 1 cut(s) 380
Hpy166II GTNNAC 1 cut(s) 418
Hpy188I TCNGA 1 cut(s) 204
Hpy188III TCNNGA 1 cut(s) 503
Hpy8I GTNNAC 1 cut(s) 418
HpyAV CCTTC 5 cut(s) 70, 129, 189, 470, 509
HpyCH4V TGCA 5 cut(s) 22, 71, 285, 306, 446
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 437
Hsp92II CATG 1 cut(s) 527
HspAI GCGC 1 cut(s) 354
Kzo9I GATC 2 cut(s) 169, 575
LmnI GCTCC 1 cut(s) 392
Lsp1109I GCAGC 4 cut(s) 290, 407, 430, 452
LweI GCATC 1 cut(s) 272
MaeI CTAG 4 cut(s) 14, 132, 173, 609
MaeIII GTNAC 1 cut(s) 319
MalI GATC 2 cut(s) 171, 577
MboI GATC 2 cut(s) 169, 575
MboII GAAGA 5 cut(s) 56, 172, 518, 544, 570
MfeI CAATTG 1 cut(s) 585
MflI RGATCY 2 cut(s) 169, 575
MlsI TGGCCA 1 cut(s) 295
MluCI AATT 5 cut(s) 248, 467, 480, 535, 585
MluNI TGGCCA 1 cut(s) 295
MnlI CCTC 4 cut(s) 139, 142, 406, 466
Mox20I TGGCCA 1 cut(s) 295
MscI TGGCCA 1 cut(s) 295
MseI TTAA 3 cut(s) 362, 408, 597
Msp20I TGGCCA 1 cut(s) 295
MspA1I CMGCKG 1 cut(s) 443
MspR9I CCNGG 2 cut(s) 297, 317
MunI CAATTG 1 cut(s) 585
MvaI CCWGG 2 cut(s) 297, 317
MwoI GCNNNNNNNGC 2 cut(s) 19, 437
NdeII GATC 2 cut(s) 169, 575
NlaIII CATG 1 cut(s) 527
NmuCI GTSAC 1 cut(s) 319
PfeI GAWTC 1 cut(s) 380
PkrI GCNGC 4 cut(s) 305, 397, 442, 445
Psp6I CCWGG 2 cut(s) 295, 315
PspGI CCWGG 2 cut(s) 295, 315
PstI CTGCAG 1 cut(s) 308
PstNI CAGNNNCTG 3 cut(s) 28, 107, 443
PsuI RGATCY 2 cut(s) 169, 575
PvuII CAGCTG 1 cut(s) 443
RsaI GTAC 3 cut(s) 32, 216, 606
RsaNI GTAC 3 cut(s) 31, 215, 605
SaqAI TTAA 3 cut(s) 362, 408, 597
SatI GCNGC 4 cut(s) 304, 396, 441, 444
Sau3AI GATC 2 cut(s) 169, 575
ScaI AGTACT 1 cut(s) 216
ScrFI CCNGG 2 cut(s) 297, 317
SfaNI GCATC 1 cut(s) 272
SfcI CTRYAG 1 cut(s) 304
Sse9I AATT 5 cut(s) 248, 467, 480, 535, 585
SspMI CTAG 4 cut(s) 14, 132, 173, 609
StyD4I CCNGG 2 cut(s) 295, 315
TasI AATT 5 cut(s) 248, 467, 480, 535, 585
TatI WGTACW 2 cut(s) 30, 214
TfiI GAWTC 1 cut(s) 380
Tru1I TTAA 3 cut(s) 362, 408, 597
Tru9I TTAA 3 cut(s) 362, 408, 597
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 4 cut(s) 303, 395, 440, 443
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 2 cut(s) 531, 570
XapI RAATTY 1 cut(s) 535
XspI CTAG 4 cut(s) 14, 132, 173, 609
ZrmI AGTACT 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.