Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0016992

Physical Location & Seq

Genomic Coordinates Reverse (-)

11500508 .. 11503870

Gene Structure 3363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0146000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGAATCATTCTGGAGCAGCAGTAGTTGAAGTTACAAAAGACAAGAATGGAATCGATCAATTTCTCCTTCAAAATCCTCGAGGAGCTTCCGCTAGGGTTAGCTTATATGGAGGCCAGGTTTTGTCCTGGAGGAGTGAGCGTGGCGAAGAATTGTTGTTCATTAGCAGTAAGGCAGTCTTTAAGCCACCAAAAGCAGTGAGAGGAGGAATTCCAATCTGTTTTCCACAGTTTGGAAATGGATCATTGGAGCAGAATGGATTTGCCAGGAACAGGATTTGGGCAATCGACAATGAACCTCCACCTCTAAATCCTAATGATTCTAATGGCAAGGCCTACATTGACTTGCTACTCAAACCATCTGAGGATGATTTGAAGATTTGGCCACATAGCTTCGAGTTTCGTCTTAGGGTCTCACTGGCAGCAGAGGGGCATCTAACCCTGATATCACGCATCAGGAACATCAATTGCAAGCCTTTCAGTTTTTCAATTGCTTACCACACATATTTCTCCATTTCTGATATCAGTGAAGTGAGGATTGAGGGCCTGGAGACTCTTGACTACCTAGACAATCTATGTGAAAAGGAGCGCTTTACAGAACAAGGGGATGCCTTAACATTTGAATCAGAGGTGGACCGAGCGTACCTTAGTTCTTCAGGTGCAATAGCTGTTTTTGATCATGAAAGAAAGAGGACATTTGTTGTACGAAAGGAGGGACTTCCAGATGTTGCGGTTTGGAACCCATGGGATAAAAAATCCAAATCCATAGTTGATCTTGGAGATGAAGAGTACAAACAAATGCTTTGTGTTGATGGAGCAGCAATTGAGAAGCCAATCACCTTGAAGCCCGGTGAGGAATGGACCGGCCGAGTGGAGCTCTCTGTTTTGGCTTCAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016043 GO:0019904 GO:0022607 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051259 GO:0051291 GO:0065003 GO:0070206 GO:0070208 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SRP54 SRP54_N SRP_SPB

Protein Analysis

298

Amino Acids

33.39

Weight (kDa)

5.43

Isoelectric Point (pI)

26.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldose_epim	PF01263	20 - 292	3e-66	Aldose 1-epimerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016992)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0088451
rosa_laevigata	RLG00000017376 RLG00000023037
rosa_roxburghii	Rroxscaffold_1G00035610 Rroxscaffold_3G00241820 Rroxscaffold_4G00298190
rosa_rugosa	Rorug07G0146000
rosa_samantha	Rh1AG156400 Rh2AG229300 Rh2CG467600 Rh3BG361200 Rh4BG131600 Rh5CG339100 Rh7CG442900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	78
AccB7I	CCANNNNNTGG	1 cut(s)	230
AciI	CCGC	2 cut(s)	90, 728
AclWI	GGATC	1 cut(s)	247
AcoI	YGGCCR	2 cut(s)	380, 862
AcsI	RAATTY	1 cut(s)	207
AcuI	CTGAAG	1 cut(s)	636
AfaI	GTAC	3 cut(s)	641, 702, 788
AfeI	AGCGCT	1 cut(s)	587
AfiI	CCNNNNNNNGG	2 cut(s)	230, 270
AgsI	TTSAA	7 cut(s)	29, 71, 373, 486, 620, 841, 891
AjnI	CCWGG	4 cut(s)	114, 125, 263, 543
AluBI	AGCT	5 cut(s)	86, 102, 390, 665, 874
AluI	AGCT	5 cut(s)	86, 102, 390, 665, 874
Alw21I	GWGCWC	1 cut(s)	876
Alw26I	GTCTC	2 cut(s)	415, 542
AlwI	GGATC	1 cut(s)	247
Ama87I	CYCGRG	1 cut(s)	78
Aor51HI	AGCGCT	1 cut(s)	587
AoxI	GGCC	5 cut(s)	112, 330, 380, 541, 862
ApeKI	GCWGC	3 cut(s)	17, 419, 815
ApoI	RAATTY	1 cut(s)	207
AspLEI	GCGC	1 cut(s)	588
AspS9I	GGNCC	3 cut(s)	541, 631, 858
AsuC2I	CCSGG	1 cut(s)	846
AsuHPI	GGTGA	2 cut(s)	826, 860
AvaI	CYCGRG	1 cut(s)	78
AvaII	GGWCC	2 cut(s)	631, 858
BalI	TGGCCA	1 cut(s)	382
BanII	GRGCYC	1 cut(s)	876
Bbv12I	GWGCWC	1 cut(s)	876
BbvI	GCAGC	3 cut(s)	29, 431, 827
BccI	CCATC	2 cut(s)	364, 803
BciT130I	CCWGG	4 cut(s)	116, 127, 265, 545
BclI	TGATCA	1 cut(s)	673
BcnI	CCSGG	1 cut(s)	846
BcoDI	GTCTC	2 cut(s)	415, 542
BfaI	CTAG	2 cut(s)	93, 563
BfoI	RGCGCY	1 cut(s)	589
BisI	GCNGC	3 cut(s)	18, 420, 816
BlsI	GCNGC	3 cut(s)	19, 421, 817
Bme1390I	CCNGG	5 cut(s)	116, 127, 265, 545, 846
Bme18I	GGWCC	2 cut(s)	631, 858
BmeT110I	CYCGRG	1 cut(s)	78
BmgT120I	GGNCC	3 cut(s)	541, 631, 858
BmiI	GGNNCC	1 cut(s)	737
BmrFI	CCNGG	5 cut(s)	116, 127, 265, 545, 846
BmsI	GCATC	3 cut(s)	439, 459, 595
BplI	GAGNNNNNCTC	2 cut(s)	858, 890
BpmI	CTGGAG	3 cut(s)	33, 148, 566
BpuMI	CCSGG	1 cut(s)	846
Bsa29I	ATCGAT	1 cut(s)	54
BsaI	GGTCTC	1 cut(s)	415
BsaJI	CCNNGG	1 cut(s)	740
BsaXI	ACNNNNNCTCC	6 cut(s)	6, 36, 102, 124, 132, 154
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 270
Bse118I	RCCGGY	1 cut(s)	860
Bse1I	ACTGG	1 cut(s)	420
BseBI	CCWGG	4 cut(s)	116, 127, 265, 545
BseCI	ATCGAT	1 cut(s)	54
BseDI	CCNNGG	1 cut(s)	740
BseGI	GGATG	2 cut(s)	370, 610
BseLI	CCNNNNNNNGG	2 cut(s)	230, 270
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	1 cut(s)	420
BseRI	GAGGAG	3 cut(s)	96, 145, 216
BseX3I	CGGCCG	1 cut(s)	862
BseXI	GCAGC	3 cut(s)	29, 431, 827
Bsh1285I	CGRYCG	1 cut(s)	865
BshFI	GGCC	5 cut(s)	114, 332, 382, 543, 864
BshVI	ATCGAT	1 cut(s)	54
BsiEI	CGRYCG	1 cut(s)	865
BsiHKAI	GWGCWC	1 cut(s)	876
BsiHKCI	CYCGRG	1 cut(s)	78
BsiSI	CCGG	2 cut(s)	846, 861
BslFI	GGGAC	1 cut(s)	726
BslI	CCNNNNNNNGG	2 cut(s)	230, 270
BsmAI	GTCTC	2 cut(s)	415, 542
BsmFI	GGGAC	1 cut(s)	726
BsnI	GGCC	5 cut(s)	114, 332, 382, 543, 864
Bso31I	GGTCTC	1 cut(s)	415
BsoBI	CYCGRG	1 cut(s)	78
Bsp1286I	GDGCHC	1 cut(s)	876
Bsp143I	GATC	4 cut(s)	55, 239, 673, 769
Bsp19I	CCATGG	1 cut(s)	740
BspACI	CCGC	2 cut(s)	90, 728
BspANI	GGCC	5 cut(s)	114, 332, 382, 543, 864
BspCNI	CTCAG	1 cut(s)	352
BspDI	ATCGAT	1 cut(s)	54
BspHI	TCATGA	1 cut(s)	676
BspLI	GGNNCC	1 cut(s)	737
BspPI	GGATC	1 cut(s)	247
BspTNI	GGTCTC	1 cut(s)	415
BsrFI	RCCGGY	1 cut(s)	860
BsrI	ACTGG	1 cut(s)	420
BssAI	RCCGGY	1 cut(s)	860
BssECI	CCNNGG	1 cut(s)	740
BssMI	GATC	4 cut(s)	55, 239, 673, 769
BssT1I	CCWWGG	1 cut(s)	740
Bst2UI	CCWGG	4 cut(s)	116, 127, 265, 545
Bst4CI	ACNGT	1 cut(s)	228
Bst6I	CTCTTC	1 cut(s)	777
BstC8I	GCNNGC	1 cut(s)	470
BstDEI	CTNAG	3 cut(s)	360, 404, 644
BstDSI	CCRYGG	1 cut(s)	740
BstF5I	GGATG	2 cut(s)	370, 610
BstH2I	RGCGCY	1 cut(s)	589
BstHHI	GCGC	1 cut(s)	588
BstKTI	GATC	4 cut(s)	58, 242, 676, 772
BstMAI	GTCTC	2 cut(s)	415, 542
BstMBI	GATC	4 cut(s)	55, 239, 673, 769
BstMCI	CGRYCG	1 cut(s)	865
BstNI	CCWGG	4 cut(s)	116, 127, 265, 545
BstSCI	CCNGG	5 cut(s)	114, 125, 263, 543, 844
BstV1I	GCAGC	3 cut(s)	29, 431, 827
BstZI	CGGCCG	1 cut(s)	862
Bsu15I	ATCGAT	1 cut(s)	54
BsuRI	GGCC	5 cut(s)	114, 332, 382, 543, 864
BsuTUI	ATCGAT	1 cut(s)	54
BtgI	CCRYGG	1 cut(s)	740
BtsCI	GGATG	2 cut(s)	370, 610
BtsI	GCAGTG	1 cut(s)	201
BtsIMutI	CAGTG	3 cut(s)	201, 413, 529
Cac8I	GCNNGC	1 cut(s)	470
CciI	TCATGA	1 cut(s)	676
CfoI	GCGC	1 cut(s)	588
Cfr10I	RCCGGY	1 cut(s)	860
Cfr13I	GGNCC	3 cut(s)	541, 631, 858
ClaI	ATCGAT	1 cut(s)	54
Csp6I	GTAC	3 cut(s)	640, 701, 787
CviAII	CATG	2 cut(s)	677, 741
CviQI	GTAC	3 cut(s)	640, 701, 787
DdeI	CTNAG	3 cut(s)	360, 404, 644
DpnI	GATC	4 cut(s)	57, 241, 675, 771
DpnII	GATC	4 cut(s)	55, 239, 673, 769
EaeI	YGGCCR	2 cut(s)	380, 862
EagI	CGGCCG	1 cut(s)	862
Eam1104I	CTCTTC	1 cut(s)	777
EarI	CTCTTC	1 cut(s)	777
Ecl136II	GAGCTC	1 cut(s)	874
EclXI	CGGCCG	1 cut(s)	862
Eco130I	CCWWGG	1 cut(s)	740
Eco147I	AGGCCT	1 cut(s)	332
Eco24I	GRGCYC	1 cut(s)	876
Eco31I	GGTCTC	1 cut(s)	415
Eco32I	GATATC	2 cut(s)	444, 520
Eco47I	GGWCC	2 cut(s)	631, 858
Eco47III	AGCGCT	1 cut(s)	587
Eco52I	CGGCCG	1 cut(s)	862
Eco53kI	GAGCTC	1 cut(s)	874
Eco57I	CTGAAG	1 cut(s)	636
Eco88I	CYCGRG	1 cut(s)	78
EcoICRI	GAGCTC	1 cut(s)	874
EcoO109I	RGGNCCY	1 cut(s)	541
EcoRI	GAATTC	1 cut(s)	207
EcoRII	CCWGG	4 cut(s)	114, 125, 263, 543
EcoRV	GATATC	2 cut(s)	444, 520
EcoT14I	CCWWGG	1 cut(s)	740
EcoT38I	GRGCYC	1 cut(s)	876
ErhI	CCWWGG	1 cut(s)	740
FaeI	CATG	2 cut(s)	680, 744
FaiI	YATR	8 cut(s)	106, 108, 387, 502, 574, 678, 742, 764
FalI	AAGNNNNNCTT	4 cut(s)	161, 193, 572, 604
FaqI	GGGAC	1 cut(s)	726
FatI	CATG	2 cut(s)	676, 740
FbaI	TGATCA	1 cut(s)	673
Fnu4HI	GCNGC	3 cut(s)	18, 420, 816
FokI	GGATG	2 cut(s)	377, 617
FriOI	GRGCYC	1 cut(s)	876
Fsp4HI	GCNGC	3 cut(s)	18, 420, 816
FspBI	CTAG	2 cut(s)	93, 563
GlaI	GCGC	1 cut(s)	587
GluI	GCNGC	3 cut(s)	18, 420, 816
GsuI	CTGGAG	3 cut(s)	33, 148, 566
HaeII	RGCGCY	1 cut(s)	589
HaeIII	GGCC	5 cut(s)	114, 332, 382, 543, 864
HapII	CCGG	2 cut(s)	846, 861
HhaI	GCGC	1 cut(s)	588
Hin1II	CATG	2 cut(s)	680, 744
Hin6I	GCGC	1 cut(s)	586
HinP1I	GCGC	1 cut(s)	586
HinfI	GANTC	5 cut(s)	4, 51, 317, 550, 620
HpaII	CCGG	2 cut(s)	846, 861
HphI	GGTGA	2 cut(s)	826, 860
Hpy166II	GTNNAC	1 cut(s)	631
Hpy188I	TCNGA	3 cut(s)	361, 517, 625
Hpy188III	TCNNGA	5 cut(s)	12, 454, 554, 677, 719
Hpy8I	GTNNAC	1 cut(s)	631
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	1 cut(s)	228
HpyCH4V	TGCA	2 cut(s)	468, 659
HpyF3I	CTNAG	3 cut(s)	360, 404, 644
Hsp92II	CATG	2 cut(s)	680, 744
HspAI	GCGC	1 cut(s)	586
Ksp22I	TGATCA	1 cut(s)	673
Kzo9I	GATC	4 cut(s)	55, 239, 673, 769
LmnI	GCTCC	6 cut(s)	14, 83, 247, 583, 812, 871
Lsp1109I	GCAGC	3 cut(s)	29, 431, 827
LweI	GCATC	3 cut(s)	439, 459, 595
MaeI	CTAG	2 cut(s)	93, 563
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	4 cut(s)	57, 241, 675, 771
MboI	GATC	4 cut(s)	55, 239, 673, 769
MboII	GAAGA	4 cut(s)	158, 385, 642, 794
MfeI	CAATTG	3 cut(s)	463, 486, 819
MhlI	GDGCHC	1 cut(s)	876
MlsI	TGGCCA	1 cut(s)	382
MluCI	AATT	6 cut(s)	59, 149, 207, 463, 486, 819
MluNI	TGGCCA	1 cut(s)	382
MlyI	GAGTC	1 cut(s)	544
Mox20I	TGGCCA	1 cut(s)	382
MscI	TGGCCA	1 cut(s)	382
MseI	TTAA	3 cut(s)	180, 611, 895
Msp20I	TGGCCA	1 cut(s)	382
MspI	CCGG	2 cut(s)	846, 861
MspR9I	CCNGG	5 cut(s)	116, 127, 265, 545, 846
MunI	CAATTG	3 cut(s)	463, 486, 819
MvaI	CCWGG	4 cut(s)	116, 127, 265, 545
NciI	CCSGG	1 cut(s)	846
NcoI	CCATGG	1 cut(s)	740
NdeII	GATC	4 cut(s)	55, 239, 673, 769
NlaIII	CATG	2 cut(s)	680, 744
NlaIV	GGNNCC	1 cut(s)	737
NmeAIII	GCCGAG	1 cut(s)	890
PaeR7I	CTCGAG	1 cut(s)	78
PagI	TCATGA	1 cut(s)	676
PceI	AGGCCT	1 cut(s)	332
PfeI	GAWTC	4 cut(s)	4, 51, 317, 620
PflMI	CCANNNNNTGG	1 cut(s)	230
PfoI	TCCNGGA	1 cut(s)	125
PkrI	GCNGC	3 cut(s)	19, 421, 817
PleI	GAGTC	1 cut(s)	544
PpsI	GAGTC	1 cut(s)	544
Psp124BI	GAGCTC	1 cut(s)	876
Psp6I	CCWGG	4 cut(s)	114, 125, 263, 543
PspGI	CCWGG	4 cut(s)	114, 125, 263, 543
PspN4I	GGNNCC	1 cut(s)	737
PspPI	GGNCC	3 cut(s)	541, 631, 858
PspXI	VCTCGAGB	1 cut(s)	78
RsaI	GTAC	3 cut(s)	641, 702, 788
RsaNI	GTAC	3 cut(s)	640, 701, 787
SacI	GAGCTC	1 cut(s)	876
SaqAI	TTAA	3 cut(s)	180, 611, 895
SatI	GCNGC	3 cut(s)	18, 420, 816
Sau3AI	GATC	4 cut(s)	55, 239, 673, 769
Sau96I	GGNCC	3 cut(s)	541, 631, 858
SchI	GAGTC	1 cut(s)	544
ScrFI	CCNGG	5 cut(s)	116, 127, 265, 545, 846
SduI	GDGCHC	1 cut(s)	876
SfaNI	GCATC	3 cut(s)	439, 459, 595
Sfr274I	CTCGAG	1 cut(s)	78
SinI	GGWCC	2 cut(s)	631, 858
SlaI	CTCGAG	1 cut(s)	78
SmlI	CTYRAG	1 cut(s)	78
SmoI	CTYRAG	1 cut(s)	78
Sse9I	AATT	6 cut(s)	59, 149, 207, 463, 486, 819
SseBI	AGGCCT	1 cut(s)	332
SsiI	CCGC	2 cut(s)	90, 728
SspMI	CTAG	2 cut(s)	93, 563
SstI	GAGCTC	1 cut(s)	876
StuI	AGGCCT	1 cut(s)	332
StyD4I	CCNGG	5 cut(s)	114, 125, 263, 543, 844
StyI	CCWWGG	1 cut(s)	740
TaaI	ACNGT	1 cut(s)	228
TaqI	TCGA	4 cut(s)	54, 79, 285, 393
TaqII	GACCGA	1 cut(s)	648
TasI	AATT	6 cut(s)	59, 149, 207, 463, 486, 819
TatI	WGTACW	1 cut(s)	786
TfiI	GAWTC	4 cut(s)	4, 51, 317, 620
Tru1I	TTAA	3 cut(s)	180, 611, 895
Tru9I	TTAA	3 cut(s)	180, 611, 895
TscAI	CASTG	3 cut(s)	201, 420, 529
TseI	GCWGC	3 cut(s)	17, 419, 815
TspDTI	ATGAA	5 cut(s)	17, 148, 306, 693, 795
TspRI	CASTG	3 cut(s)	201, 420, 529
Van91I	CCANNNNNTGG	1 cut(s)	230
VpaK11BI	GGWCC	2 cut(s)	631, 858
XapI	RAATTY	1 cut(s)	207
XhoI	CTCGAG	1 cut(s)	78
XspI	CTAG	2 cut(s)	93, 563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.