RLG00000017376

Signal recognition particle 54 kDa protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0016992
Physical Location & Seq
Forward (+)
15844547 .. 15845985
1439 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017376

Sequence Viewer

Length: 378 bp
ATGGATACTGCTGGAAGGCTTCAGATAGACAAAGTACTGATGGATGAGTTGAAAGAAGTAAAGCGGGAATTGAACCCCACAGAAACTTTACTCATTGTGGATGCAATGACTGGCCAGGAAGCTGTAGCCCTGGTCACAACATTCAATGTAGAGATTGGGATTACTGGCGCTATTTTAACAAAGCTGGATGGAGATTTTAGAGGTGGAGCAGCTTTGAGTGTTAAAGAGGTTTACTTGTTGGCTTACTTTTCGTTCATATCTCTGTGCTTCTATTATTTGACAATAATACCCATATATGGTTTGACAGCCTTGTCTATATTCTTAATTAAATTCAGTCCCTGCTATTCAATACCAGGACTATTGATGAAGTGTGTATAG

Protein Analysis

126

Amino Acids

13.78

Weight (kDa)

4.82

Isoelectric Point (pI)

14.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP54 PF00448 1 - 77 1.7e-26 SRP54-type protein, GTPase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 310
AciI CCGC 1 cut(s) 64
AcoI YGGCCR 1 cut(s) 112
AcsI RAATTY 1 cut(s) 329
AcuI CTGAAG 1 cut(s) 5
AfaI GTAC 1 cut(s) 36
AfiI CCNNNNNNNGG 1 cut(s) 296
AgsI TTSAA 4 cut(s) 52, 73, 145, 348
AjnI CCWGG 3 cut(s) 114, 129, 352
AluBI AGCT 3 cut(s) 122, 184, 212
AluI AGCT 3 cut(s) 122, 184, 212
AlwNI CAGNNNCTG 1 cut(s) 339
AoxI GGCC 1 cut(s) 112
ApeKI GCWGC 1 cut(s) 209
ApoI RAATTY 1 cut(s) 329
AspLEI GCGC 1 cut(s) 170
BalI TGGCCA 1 cut(s) 114
BbvI GCAGC 1 cut(s) 221
BccI CCATC 2 cut(s) 34, 182
BciT130I CCWGG 3 cut(s) 116, 131, 354
BfmI CTRYAG 1 cut(s) 123
BfoI RGCGCY 1 cut(s) 171
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
BmcAI AGTACT 1 cut(s) 36
Bme1390I CCNGG 3 cut(s) 116, 131, 354
BmrFI CCNGG 3 cut(s) 116, 131, 354
BmsI GCATC 1 cut(s) 91
BsaJI CCNNGG 1 cut(s) 129
Bsc4I CCNNNNNNNGG 1 cut(s) 296
Bse1I ACTGG 2 cut(s) 115, 169
Bse3DI GCAATG 1 cut(s) 111
BseBI CCWGG 3 cut(s) 116, 131, 354
BseDI CCNNGG 1 cut(s) 129
BseGI GGATG 3 cut(s) 49, 106, 193
BseLI CCNNNNNNNGG 1 cut(s) 296
BseMI GCAATG 1 cut(s) 111
BseNI ACTGG 2 cut(s) 115, 169
BseXI GCAGC 1 cut(s) 221
BshFI GGCC 1 cut(s) 114
BslFI GGGAC 1 cut(s) 321
BslI CCNNNNNNNGG 1 cut(s) 296
BsmFI GGGAC 1 cut(s) 321
BsnI GGCC 1 cut(s) 114
BspACI CCGC 1 cut(s) 64
BspANI GGCC 1 cut(s) 114
BsrDI GCAATG 1 cut(s) 111
BsrI ACTGG 2 cut(s) 115, 169
BssECI CCNNGG 1 cut(s) 129
Bst2UI CCWGG 3 cut(s) 116, 131, 354
BstF5I GGATG 3 cut(s) 49, 106, 193
BstH2I RGCGCY 1 cut(s) 171
BstHHI GCGC 1 cut(s) 170
BstNI CCWGG 3 cut(s) 116, 131, 354
BstSCI CCNGG 3 cut(s) 114, 129, 352
BstSFI CTRYAG 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 221
BsuRI GGCC 1 cut(s) 114
BtsCI GGATG 3 cut(s) 49, 106, 193
CaiI CAGNNNCTG 1 cut(s) 339
CfoI GCGC 1 cut(s) 170
Csp6I GTAC 1 cut(s) 35
CviJI RGCY 8 cut(s) 19, 114, 122, 128, 184, 212, 242, 308
CviKI_1 RGCY 8 cut(s) 19, 114, 122, 128, 184, 212, 242, 308
CviQI GTAC 1 cut(s) 35
DrdI GACNNNNNNGTC 1 cut(s) 310
DseDI GACNNNNNNGTC 1 cut(s) 310
EaeI YGGCCR 1 cut(s) 112
Eco57I CTGAAG 1 cut(s) 5
EcoRII CCWGG 3 cut(s) 114, 129, 352
FaiI YATR 6 cut(s) 257, 293, 295, 297, 317, 376
FaqI GGGAC 1 cut(s) 321
FauI CCCGC 1 cut(s) 57
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 3 cut(s) 56, 113, 200
Fsp4HI GCNGC 1 cut(s) 210
GlaI GCGC 1 cut(s) 169
GluI GCNGC 1 cut(s) 210
HaeII RGCGCY 1 cut(s) 171
HaeIII GGCC 1 cut(s) 114
HhaI GCGC 1 cut(s) 170
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 1 cut(s) 24
Hpy8I GTNNAC 1 cut(s) 232
HpyAV CCTTC 1 cut(s) 9
HpyCH4V TGCA 1 cut(s) 104
HspAI GCGC 1 cut(s) 168
LmnI GCTCC 1 cut(s) 206
Lsp1109I GCAGC 1 cut(s) 221
LweI GCATC 1 cut(s) 91
MaeIII GTNAC 1 cut(s) 133
MlsI TGGCCA 1 cut(s) 114
MluCI AATT 3 cut(s) 68, 324, 329
MluNI TGGCCA 1 cut(s) 114
MnlI CCTC 2 cut(s) 194, 220
Mox20I TGGCCA 1 cut(s) 114
MscI TGGCCA 1 cut(s) 114
MseI TTAA 4 cut(s) 176, 222, 323, 327
Msp20I TGGCCA 1 cut(s) 114
MspR9I CCNGG 3 cut(s) 116, 131, 354
MvaI CCWGG 3 cut(s) 116, 131, 354
NmuCI GTSAC 1 cut(s) 133
PacI TTAATTAA 1 cut(s) 327
PkrI GCNGC 1 cut(s) 211
Psp6I CCWGG 3 cut(s) 114, 129, 352
PspGI CCWGG 3 cut(s) 114, 129, 352
PstNI CAGNNNCTG 1 cut(s) 339
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
SaqAI TTAA 4 cut(s) 176, 222, 323, 327
SatI GCNGC 1 cut(s) 210
ScaI AGTACT 1 cut(s) 36
ScrFI CCNGG 3 cut(s) 116, 131, 354
SetI ASST 5 cut(s) 124, 186, 205, 214, 231
SfaNI GCATC 1 cut(s) 91
SfcI CTRYAG 1 cut(s) 123
Sse9I AATT 3 cut(s) 68, 324, 329
SsiI CCGC 1 cut(s) 64
StyD4I CCNGG 3 cut(s) 114, 129, 352
TasI AATT 3 cut(s) 68, 324, 329
TatI WGTACW 1 cut(s) 34
Tru1I TTAA 4 cut(s) 176, 222, 323, 327
Tru9I TTAA 4 cut(s) 176, 222, 323, 327
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 1 cut(s) 209
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 1 cut(s) 244
XapI RAATTY 1 cut(s) 329
ZrmI AGTACT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.