Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0016992

Physical Location & Seq

Genomic Coordinates Forward (+)

34046480 .. 34050102

Gene Structure 3623 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00241820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGGATGAGTTGAAAGAAGTAAAGCGGGAAATGAACCCCACAGAAACTTTACTCGTTGTGGATGCAATGACTGGCCAGGAAGCTGCAGCCCTGGTCACAACATTCAATGTAGAGATTGGGATTACTGGCGCTATTTTAACAAAGCTGGATGGAGATTCTAGAGGTGGAGCAGCTTTGAGTGTTAAAGAGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016043 GO:0019904 GO:0022607 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051259 GO:0051291 GO:0065003 GO:0070206 GO:0070208 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SRP54 SRP54_N SRP_SPB

Protein Analysis

64

Amino Acids

6.75

Weight (kDa)

4.41

Isoelectric Point (pI)

20.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRP54	PF00448	1 - 63	1.7e-20	SRP54-type protein, GTPase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016992)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0088451
rosa_laevigata	RLG00000017376 RLG00000023037
rosa_roxburghii	Rroxscaffold_1G00035610 Rroxscaffold_3G00241820 Rroxscaffold_4G00298190
rosa_rugosa	Rorug07G0146000
rosa_samantha	Rh1AG156400 Rh2AG229300 Rh2CG467600 Rh3BG361200 Rh4BG131600 Rh5CG339100 Rh7CG442900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	25
AcoI	YGGCCR	1 cut(s)	73
AgsI	TTSAA	2 cut(s)	13, 106
AjnI	CCWGG	2 cut(s)	75, 90
AluBI	AGCT	3 cut(s)	83, 145, 173
AluI	AGCT	3 cut(s)	83, 145, 173
AoxI	GGCC	1 cut(s)	73
ApeKI	GCWGC	3 cut(s)	83, 86, 170
AspLEI	GCGC	1 cut(s)	131
BalI	TGGCCA	1 cut(s)	75
BbvI	GCAGC	3 cut(s)	70, 98, 182
BccI	CCATC	1 cut(s)	143
BciT130I	CCWGG	2 cut(s)	77, 92
BfaI	CTAG	1 cut(s)	159
BfmI	CTRYAG	1 cut(s)	84
BfoI	RGCGCY	1 cut(s)	132
BisI	GCNGC	3 cut(s)	84, 87, 171
BlsI	GCNGC	3 cut(s)	85, 88, 172
Bme1390I	CCNGG	2 cut(s)	77, 92
BmrFI	CCNGG	2 cut(s)	77, 92
BmsI	GCATC	1 cut(s)	52
BsaJI	CCNNGG	1 cut(s)	90
Bse1I	ACTGG	2 cut(s)	76, 130
Bse3DI	GCAATG	1 cut(s)	72
BseBI	CCWGG	2 cut(s)	77, 92
BseDI	CCNNGG	1 cut(s)	90
BseGI	GGATG	3 cut(s)	10, 67, 154
BseMI	GCAATG	1 cut(s)	72
BseNI	ACTGG	2 cut(s)	76, 130
BseXI	GCAGC	3 cut(s)	70, 98, 182
BshFI	GGCC	1 cut(s)	75
BsnI	GGCC	1 cut(s)	75
BspACI	CCGC	1 cut(s)	25
BspANI	GGCC	1 cut(s)	75
BspMAI	CTGCAG	1 cut(s)	88
BsrDI	GCAATG	1 cut(s)	72
BsrI	ACTGG	2 cut(s)	76, 130
BssECI	CCNNGG	1 cut(s)	90
Bst2UI	CCWGG	2 cut(s)	77, 92
BstF5I	GGATG	3 cut(s)	10, 67, 154
BstH2I	RGCGCY	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	131
BstNI	CCWGG	2 cut(s)	77, 92
BstSCI	CCNGG	2 cut(s)	75, 90
BstSFI	CTRYAG	1 cut(s)	84
BstV1I	GCAGC	3 cut(s)	70, 98, 182
BsuRI	GGCC	1 cut(s)	75
BtsCI	GGATG	3 cut(s)	10, 67, 154
CfoI	GCGC	1 cut(s)	131
CviJI	RGCY	5 cut(s)	75, 83, 89, 145, 173
CviKI_1	RGCY	5 cut(s)	75, 83, 89, 145, 173
EaeI	YGGCCR	1 cut(s)	73
EcoRII	CCWGG	2 cut(s)	75, 90
FauI	CCCGC	1 cut(s)	18
Fnu4HI	GCNGC	3 cut(s)	84, 87, 171
FokI	GGATG	3 cut(s)	17, 74, 161
Fsp4HI	GCNGC	3 cut(s)	84, 87, 171
FspBI	CTAG	1 cut(s)	159
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	3 cut(s)	84, 87, 171
HaeII	RGCGCY	1 cut(s)	132
HaeIII	GGCC	1 cut(s)	75
HhaI	GCGC	1 cut(s)	131
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HinfI	GANTC	1 cut(s)	155
Hpy188III	TCNNGA	1 cut(s)	159
HpyCH4V	TGCA	2 cut(s)	65, 86
HspAI	GCGC	1 cut(s)	129
LmnI	GCTCC	1 cut(s)	167
LpnPI	CCDG	7 cut(s)	57, 62, 77, 89, 104, 111, 131
Lsp1109I	GCAGC	3 cut(s)	70, 98, 182
LweI	GCATC	1 cut(s)	52
MaeI	CTAG	1 cut(s)	159
MaeIII	GTNAC	1 cut(s)	94
MlsI	TGGCCA	1 cut(s)	75
MluNI	TGGCCA	1 cut(s)	75
MnlI	CCTC	2 cut(s)	155, 181
Mox20I	TGGCCA	1 cut(s)	75
MscI	TGGCCA	1 cut(s)	75
MseI	TTAA	2 cut(s)	137, 183
Msp20I	TGGCCA	1 cut(s)	75
MspR9I	CCNGG	2 cut(s)	77, 92
MvaI	CCWGG	2 cut(s)	77, 92
NmuCI	GTSAC	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	155
PkrI	GCNGC	3 cut(s)	85, 88, 172
Psp6I	CCWGG	2 cut(s)	75, 90
PspGI	CCWGG	2 cut(s)	75, 90
PstI	CTGCAG	1 cut(s)	88
SaqAI	TTAA	2 cut(s)	137, 183
SatI	GCNGC	3 cut(s)	84, 87, 171
ScrFI	CCNGG	2 cut(s)	77, 92
SetI	ASST	5 cut(s)	85, 147, 166, 175, 192
SfaNI	GCATC	1 cut(s)	52
SfcI	CTRYAG	1 cut(s)	84
SsiI	CCGC	1 cut(s)	25
SspMI	CTAG	1 cut(s)	159
StyD4I	CCNGG	2 cut(s)	75, 90
TfiI	GAWTC	1 cut(s)	155
Tru1I	TTAA	2 cut(s)	137, 183
Tru9I	TTAA	2 cut(s)	137, 183
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	3 cut(s)	83, 86, 170
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	1 cut(s)	47
XbaI	TCTAGA	1 cut(s)	158
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.