Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0016992

Physical Location & Seq

Genomic Coordinates Reverse (-)

58168253 .. 58170886

Gene Structure 2634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG442900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGATTTGAAGGTGGAAACCAAATTGGAGATGGAATTGCAACTGGGTTTTCAACACAATAGAGCTTCCCAACATCTGAAGCTTGCAATCAGCTTTATGCTCTCATTCCGTGAAAACAAATTGGCGGTTTTGACAAGAGTATTAGCCAAGGCTTGTGGTGGTGCACATTGGGTAAAAGTGCCTGTATATACAGCAGGGACTGACACCAAACCTTCACAAATAGCTAGGCAAGGTTTAGAGGAGGCCAAAAAGAAGAACATAGATGTAGTAATAATGGATACTGCTGGAAGGCTTCAGATAGACAAAGTACTGATGGATGAGTTGAAAGAAGTAAAGCGGGAATTGAACCCCACAGAAACTTTACTTGTTGTGGATGCAATGACTGGCCAGGAAGCTGCAGCCCTGGTCACAACATTCAATGTAGAGATTGGGATTGCTGGCGCTATTTTAACAAAGCTGGATGGAGATTCTAGAGGTGGAGCAGCTTTGAGTGTTAAAGAGCTCTGGGTAGCTACTGGGTATCAGGACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016043 GO:0019904 GO:0022607 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051259 GO:0051291 GO:0065003 GO:0070206 GO:0070208 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SRP54 SRP54_N SRP_SPB

Protein Analysis

177

Amino Acids

19.41

Weight (kDa)

6.32

Isoelectric Point (pI)

26.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRP54	PF00448	56 - 167	5.1e-38	SRP54-type protein, GTPase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016992)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0088451
rosa_laevigata	RLG00000017376 RLG00000023037
rosa_roxburghii	Rroxscaffold_1G00035610 Rroxscaffold_3G00241820 Rroxscaffold_4G00298190
rosa_rugosa	Rorug07G0146000
rosa_samantha	Rh1AG156400 Rh2AG229300 Rh2CG467600 Rh3BG361200 Rh4BG131600 Rh5CG339100 Rh7CG442900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	125, 337
AcoI	YGGCCR	1 cut(s)	385
AcuI	CTGAAG	2 cut(s)	98, 278
AfaI	GTAC	1 cut(s)	309
AgsI	TTSAA	5 cut(s)	10, 53, 325, 346, 418
AjnI	CCWGG	2 cut(s)	387, 402
AluBI	AGCT	9 cut(s)	65, 82, 93, 224, 395, 457, 485, 502, 512
AluI	AGCT	9 cut(s)	65, 82, 93, 224, 395, 457, 485, 502, 512
Alw21I	GWGCWC	2 cut(s)	166, 504
Alw44I	GTGCAC	1 cut(s)	162
AlwNI	CAGNNNCTG	1 cut(s)	200
AoxI	GGCC	2 cut(s)	243, 385
ApaLI	GTGCAC	1 cut(s)	162
ApeKI	GCWGC	3 cut(s)	395, 398, 482
AspLEI	GCGC	1 cut(s)	443
BaeGI	GKGCMC	1 cut(s)	166
BalI	TGGCCA	1 cut(s)	387
BanII	GRGCYC	1 cut(s)	504
Bbv12I	GWGCWC	2 cut(s)	166, 504
BbvI	GCAGC	3 cut(s)	382, 410, 494
BccI	CCATC	3 cut(s)	25, 307, 455
BciT130I	CCWGG	2 cut(s)	389, 404
BciVI	GTATCC	1 cut(s)	271
BfaI	CTAG	2 cut(s)	225, 471
BfmI	CTRYAG	1 cut(s)	396
BfoI	RGCGCY	1 cut(s)	444
BfuI	GTATCC	1 cut(s)	271
BisI	GCNGC	3 cut(s)	396, 399, 483
BlsI	GCNGC	3 cut(s)	397, 400, 484
BmcAI	AGTACT	1 cut(s)	309
Bme1390I	CCNGG	2 cut(s)	389, 404
BmrFI	CCNGG	2 cut(s)	389, 404
BmrI	ACTGGG	2 cut(s)	53, 525
BmsI	GCATC	1 cut(s)	364
BmuI	ACTGGG	2 cut(s)	53, 525
BsaJI	CCNNGG	2 cut(s)	147, 402
Bse1I	ACTGG	3 cut(s)	48, 388, 520
Bse3DI	GCAATG	1 cut(s)	384
BseBI	CCWGG	2 cut(s)	389, 404
BseDI	CCNNGG	2 cut(s)	147, 402
BseGI	GGATG	3 cut(s)	322, 379, 466
BseMI	GCAATG	1 cut(s)	384
BseNI	ACTGG	3 cut(s)	48, 388, 520
BseRI	GAGGAG	1 cut(s)	254
BseSI	GKGCMC	1 cut(s)	166
BseXI	GCAGC	3 cut(s)	382, 410, 494
BshFI	GGCC	2 cut(s)	245, 387
BsiHKAI	GWGCWC	2 cut(s)	166, 504
BslFI	GGGAC	1 cut(s)	211
BsmFI	GGGAC	1 cut(s)	211
BsnI	GGCC	2 cut(s)	245, 387
Bsp1286I	GDGCHC	2 cut(s)	166, 504
BspACI	CCGC	2 cut(s)	125, 337
BspANI	GGCC	2 cut(s)	245, 387
BspMAI	CTGCAG	1 cut(s)	400
BsrDI	GCAATG	1 cut(s)	384
BsrI	ACTGG	3 cut(s)	48, 388, 520
BssECI	CCNNGG	2 cut(s)	147, 402
BssT1I	CCWWGG	1 cut(s)	147
Bst2UI	CCWGG	2 cut(s)	389, 404
BstC8I	GCNNGC	2 cut(s)	84, 439
BstF5I	GGATG	3 cut(s)	322, 379, 466
BstH2I	RGCGCY	1 cut(s)	444
BstHHI	GCGC	1 cut(s)	443
BstNI	CCWGG	2 cut(s)	389, 404
BstSCI	CCNGG	2 cut(s)	387, 402
BstSFI	CTRYAG	1 cut(s)	396
BstSLI	GKGCMC	1 cut(s)	166
BstV1I	GCAGC	3 cut(s)	382, 410, 494
BsuI	GTATCC	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	245, 387
BtsCI	GGATG	3 cut(s)	322, 379, 466
Cac8I	GCNNGC	2 cut(s)	84, 439
CaiI	CAGNNNCTG	1 cut(s)	200
CfoI	GCGC	1 cut(s)	443
Csp6I	GTAC	1 cut(s)	308
CspCI	CAANNNNNGTGG	2 cut(s)	136, 171
CviQI	GTAC	1 cut(s)	308
EaeI	YGGCCR	1 cut(s)	385
Ecl136II	GAGCTC	1 cut(s)	502
Eco130I	CCWWGG	1 cut(s)	147
Eco24I	GRGCYC	1 cut(s)	504
Eco53kI	GAGCTC	1 cut(s)	502
Eco57I	CTGAAG	2 cut(s)	98, 278
EcoICRI	GAGCTC	1 cut(s)	502
EcoRII	CCWGG	2 cut(s)	387, 402
EcoT14I	CCWWGG	1 cut(s)	147
EcoT38I	GRGCYC	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	147
FaiI	YATR	4 cut(s)	98, 187, 189, 260
FaqI	GGGAC	1 cut(s)	211
FauI	CCCGC	1 cut(s)	330
Fnu4HI	GCNGC	3 cut(s)	396, 399, 483
FokI	GGATG	3 cut(s)	329, 386, 473
FriOI	GRGCYC	1 cut(s)	504
Fsp4HI	GCNGC	3 cut(s)	396, 399, 483
FspBI	CTAG	2 cut(s)	225, 471
GlaI	GCGC	1 cut(s)	442
GluI	GCNGC	3 cut(s)	396, 399, 483
HaeII	RGCGCY	1 cut(s)	444
HaeIII	GGCC	2 cut(s)	245, 387
HhaI	GCGC	1 cut(s)	443
Hin6I	GCGC	1 cut(s)	441
HinP1I	GCGC	1 cut(s)	441
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	1 cut(s)	467
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	2 cut(s)	78, 297
Hpy188III	TCNNGA	2 cut(s)	471, 524
Hpy8I	GTNNAC	1 cut(s)	164
HpyAV	CCTTC	3 cut(s)	4, 222, 282
HpyCH4V	TGCA	5 cut(s)	40, 86, 164, 377, 398
HspAI	GCGC	1 cut(s)	441
LmnI	GCTCC	1 cut(s)	479
Lsp1109I	GCAGC	3 cut(s)	382, 410, 494
LweI	GCATC	1 cut(s)	364
MaeI	CTAG	2 cut(s)	225, 471
MaeIII	GTNAC	1 cut(s)	406
MboII	GAAGA	1 cut(s)	265
MhlI	GDGCHC	2 cut(s)	166, 504
MlsI	TGGCCA	1 cut(s)	387
MluCI	AATT	4 cut(s)	23, 35, 119, 341
MluNI	TGGCCA	1 cut(s)	387
MnlI	CCTC	3 cut(s)	232, 235, 467
Mox20I	TGGCCA	1 cut(s)	387
MscI	TGGCCA	1 cut(s)	387
MseI	TTAA	2 cut(s)	449, 495
Msp20I	TGGCCA	1 cut(s)	387
MspR9I	CCNGG	2 cut(s)	389, 404
MvaI	CCWGG	2 cut(s)	389, 404
NmuCI	GTSAC	1 cut(s)	406
PfeI	GAWTC	1 cut(s)	467
PkrI	GCNGC	3 cut(s)	397, 400, 484
Psp124BI	GAGCTC	1 cut(s)	504
Psp6I	CCWGG	2 cut(s)	387, 402
PspGI	CCWGG	2 cut(s)	387, 402
PstI	CTGCAG	1 cut(s)	400
PstNI	CAGNNNCTG	1 cut(s)	200
RsaI	GTAC	1 cut(s)	309
RsaNI	GTAC	1 cut(s)	308
SacI	GAGCTC	1 cut(s)	504
SaqAI	TTAA	2 cut(s)	449, 495
SatI	GCNGC	3 cut(s)	396, 399, 483
ScaI	AGTACT	1 cut(s)	309
ScrFI	CCNGG	2 cut(s)	389, 404
SduI	GDGCHC	2 cut(s)	166, 504
SfaNI	GCATC	1 cut(s)	364
SfcI	CTRYAG	1 cut(s)	396
Sse9I	AATT	4 cut(s)	23, 35, 119, 341
SsiI	CCGC	2 cut(s)	125, 337
SspMI	CTAG	2 cut(s)	225, 471
SstI	GAGCTC	1 cut(s)	504
StyD4I	CCNGG	2 cut(s)	387, 402
StyI	CCWWGG	1 cut(s)	147
TasI	AATT	4 cut(s)	23, 35, 119, 341
TatI	WGTACW	1 cut(s)	307
TfiI	GAWTC	1 cut(s)	467
Tru1I	TTAA	2 cut(s)	449, 495
Tru9I	TTAA	2 cut(s)	449, 495
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	3 cut(s)	395, 398, 482
Tsp45I	GTSAC	1 cut(s)	406
TspGWI	ACGGA	1 cut(s)	98
VneI	GTGCAC	1 cut(s)	162
XbaI	TCTAGA	1 cut(s)	470
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28
XspI	CTAG	2 cut(s)	225, 471
ZrmI	AGTACT	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.