Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0016992

Physical Location & Seq

Genomic Coordinates Forward (+)

38807635 .. 38810657

Gene Structure 3023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG339100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGATTTGAAGGTGGAAACCAAATTGGAGATGGAATTGCAACCGGGTTTTCAACACCATAGAGCTTCCCAACATCTGAAGCTTGCAATCAGCTTTATGCTCTCATTCCGTGAAAACAAATTGGCGGTTTTGACAAGAGTATTAGCCAAGGCTTGTGGTGATGCACATTGGGTAAAAGTGCCTGTATATACAGCAGGGACTGACACCAAACCTTCACAAATAGCTAGGCAAGGTTTAGAGGAGGCCAAAAAGAAGAACATAGATGAAGTAATAATGGATACTGCTGGAAGGCTTCAGATAGACAAAGTATTGATGGATGAGTTGAAAGAAGTAAAGTGGGAAATGAACCCCACAGAAACTTTACTCGTTGTGGATGCAATGACTGGCCAGGAAGCTGCAGCCCTGGTCACAACATTCAATGTAGAGATTGGGATTACTGGCGCTATTTTAACAAAGCTAGTTGGAGATTCTAGAGGTGGAGCAGCTTTGAGTGTTAAAGAGGTTTACTTGTTGGCTTACTTTTCCTTCAAAGTATCATTCTGCAACTTCTGCTCCATTTACGTCTTCATCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016043 GO:0019904 GO:0022607 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051259 GO:0051291 GO:0065003 GO:0070206 GO:0070208 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SRP54 SRP54_N SRP_SPB

Protein Analysis

191

Amino Acids

21.23

Weight (kDa)

6.43

Isoelectric Point (pI)

18.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRP54	PF00448	56 - 168	7e-35	SRP54-type protein, GTPase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016992)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0088451
rosa_laevigata	RLG00000017376 RLG00000023037
rosa_roxburghii	Rroxscaffold_1G00035610 Rroxscaffold_3G00241820 Rroxscaffold_4G00298190
rosa_rugosa	Rorug07G0146000
rosa_samantha	Rh1AG156400 Rh2AG229300 Rh2CG467600 Rh3BG361200 Rh4BG131600 Rh5CG339100 Rh7CG442900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	125
AcoI	YGGCCR	1 cut(s)	385
AcuI	CTGAAG	2 cut(s)	98, 278
AgsI	TTSAA	5 cut(s)	10, 53, 325, 418, 529
AjnI	CCWGG	2 cut(s)	387, 402
AluBI	AGCT	7 cut(s)	65, 82, 93, 224, 395, 457, 485
AluI	AGCT	7 cut(s)	65, 82, 93, 224, 395, 457, 485
AlwNI	CAGNNNCTG	1 cut(s)	200
AoxI	GGCC	2 cut(s)	243, 385
ApeKI	GCWGC	3 cut(s)	395, 398, 482
AspLEI	GCGC	1 cut(s)	443
AsuC2I	CCSGG	1 cut(s)	45
AsuHPI	GGTGA	1 cut(s)	170
BalI	TGGCCA	1 cut(s)	387
BbsI	GAAGAC	1 cut(s)	556
BbvI	GCAGC	3 cut(s)	382, 410, 494
BccI	CCATC	2 cut(s)	25, 307
BciT130I	CCWGG	2 cut(s)	389, 404
BciVI	GTATCC	1 cut(s)	271
BcnI	CCSGG	1 cut(s)	45
BfaI	CTAG	3 cut(s)	225, 458, 471
BfmI	CTRYAG	1 cut(s)	396
BfoI	RGCGCY	1 cut(s)	444
BfuI	GTATCC	1 cut(s)	271
BisI	GCNGC	3 cut(s)	396, 399, 483
BlsI	GCNGC	3 cut(s)	397, 400, 484
Bme1390I	CCNGG	3 cut(s)	45, 389, 404
BmrFI	CCNGG	3 cut(s)	45, 389, 404
BmsI	GCATC	2 cut(s)	151, 364
BpiI	GAAGAC	1 cut(s)	556
BpuMI	CCSGG	1 cut(s)	45
BsaJI	CCNNGG	2 cut(s)	147, 402
BsaXI	ACNNNNNCTCC	2 cut(s)	536, 566
Bse1I	ACTGG	2 cut(s)	388, 442
Bse3DI	GCAATG	1 cut(s)	384
BseBI	CCWGG	2 cut(s)	389, 404
BseDI	CCNNGG	2 cut(s)	147, 402
BseGI	GGATG	3 cut(s)	322, 379, 567
BseMI	GCAATG	1 cut(s)	384
BseNI	ACTGG	2 cut(s)	388, 442
BseRI	GAGGAG	1 cut(s)	254
BseXI	GCAGC	3 cut(s)	382, 410, 494
BshFI	GGCC	2 cut(s)	245, 387
BsiSI	CCGG	1 cut(s)	44
BslFI	GGGAC	1 cut(s)	211
BsmFI	GGGAC	1 cut(s)	211
BsnI	GGCC	2 cut(s)	245, 387
BspACI	CCGC	1 cut(s)	125
BspANI	GGCC	2 cut(s)	245, 387
BspMAI	CTGCAG	1 cut(s)	400
BsrDI	GCAATG	1 cut(s)	384
BsrI	ACTGG	2 cut(s)	388, 442
BssECI	CCNNGG	2 cut(s)	147, 402
BssT1I	CCWWGG	1 cut(s)	147
Bst2UI	CCWGG	2 cut(s)	389, 404
BstAPI	GCANNNNNTGC	1 cut(s)	549
BstC8I	GCNNGC	1 cut(s)	84
BstF5I	GGATG	3 cut(s)	322, 379, 567
BstH2I	RGCGCY	1 cut(s)	444
BstHHI	GCGC	1 cut(s)	443
BstMWI	GCNNNNNNNGC	1 cut(s)	549
BstNI	CCWGG	2 cut(s)	389, 404
BstSCI	CCNGG	3 cut(s)	43, 387, 402
BstSFI	CTRYAG	1 cut(s)	396
BstV1I	GCAGC	3 cut(s)	382, 410, 494
BstV2I	GAAGAC	1 cut(s)	556
BsuI	GTATCC	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	245, 387
BtsCI	GGATG	3 cut(s)	322, 379, 567
Cac8I	GCNNGC	1 cut(s)	84
CaiI	CAGNNNCTG	1 cut(s)	200
CfoI	GCGC	1 cut(s)	443
CspCI	CAANNNNNGTGG	2 cut(s)	136, 171
CviAII	CATG	1 cut(s)	573
EaeI	YGGCCR	1 cut(s)	385
Eco130I	CCWWGG	1 cut(s)	147
Eco57I	CTGAAG	2 cut(s)	98, 278
EcoRII	CCWGG	2 cut(s)	387, 402
EcoT14I	CCWWGG	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	1 cut(s)	576
FaiI	YATR	6 cut(s)	60, 98, 187, 189, 260, 574
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	1 cut(s)	572
Fnu4HI	GCNGC	3 cut(s)	396, 399, 483
FokI	GGATG	3 cut(s)	329, 386, 554
Fsp4HI	GCNGC	3 cut(s)	396, 399, 483
FspBI	CTAG	3 cut(s)	225, 458, 471
GlaI	GCGC	1 cut(s)	442
GluI	GCNGC	3 cut(s)	396, 399, 483
HaeII	RGCGCY	1 cut(s)	444
HaeIII	GGCC	2 cut(s)	245, 387
HapII	CCGG	1 cut(s)	44
HhaI	GCGC	1 cut(s)	443
Hin1II	CATG	1 cut(s)	576
Hin6I	GCGC	1 cut(s)	441
HinP1I	GCGC	1 cut(s)	441
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	1 cut(s)	467
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	1 cut(s)	505
Hpy188I	TCNGA	2 cut(s)	78, 297
Hpy188III	TCNNGA	1 cut(s)	471
Hpy8I	GTNNAC	1 cut(s)	505
HpyAV	CCTTC	4 cut(s)	4, 222, 282, 535
HpyCH4IV	ACGT	1 cut(s)	561
HpyCH4V	TGCA	6 cut(s)	40, 86, 164, 377, 398, 543
HpyF10VI	GCNNNNNNNGC	1 cut(s)	549
HpySE526I	ACGT	1 cut(s)	561
Hsp92II	CATG	1 cut(s)	576
HspAI	GCGC	1 cut(s)	441
LmnI	GCTCC	2 cut(s)	479, 557
Lsp1109I	GCAGC	3 cut(s)	382, 410, 494
LweI	GCATC	2 cut(s)	151, 364
MaeI	CTAG	3 cut(s)	225, 458, 471
MaeII	ACGT	1 cut(s)	561
MaeIII	GTNAC	1 cut(s)	406
MboII	GAAGA	2 cut(s)	265, 556
MlsI	TGGCCA	1 cut(s)	387
MluCI	AATT	3 cut(s)	23, 35, 119
MluNI	TGGCCA	1 cut(s)	387
MmeI	TCCRAC	1 cut(s)	442
MnlI	CCTC	4 cut(s)	232, 235, 467, 493
Mox20I	TGGCCA	1 cut(s)	387
MscI	TGGCCA	1 cut(s)	387
MseI	TTAA	2 cut(s)	449, 495
Msp20I	TGGCCA	1 cut(s)	387
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	3 cut(s)	45, 389, 404
MvaI	CCWGG	2 cut(s)	389, 404
MwoI	GCNNNNNNNGC	1 cut(s)	549
NciI	CCSGG	1 cut(s)	45
NlaIII	CATG	1 cut(s)	576
NmuCI	GTSAC	1 cut(s)	406
PfeI	GAWTC	1 cut(s)	467
PkrI	GCNGC	3 cut(s)	397, 400, 484
Psp6I	CCWGG	2 cut(s)	387, 402
PspGI	CCWGG	2 cut(s)	387, 402
PstI	CTGCAG	1 cut(s)	400
PstNI	CAGNNNCTG	1 cut(s)	200
SaqAI	TTAA	2 cut(s)	449, 495
SatI	GCNGC	3 cut(s)	396, 399, 483
ScrFI	CCNGG	3 cut(s)	45, 389, 404
SfaNI	GCATC	2 cut(s)	151, 364
SfcI	CTRYAG	1 cut(s)	396
Sse9I	AATT	3 cut(s)	23, 35, 119
SsiI	CCGC	1 cut(s)	125
SspMI	CTAG	3 cut(s)	225, 458, 471
StyD4I	CCNGG	3 cut(s)	43, 387, 402
StyI	CCWWGG	1 cut(s)	147
TaiI	ACGT	1 cut(s)	564
TasI	AATT	3 cut(s)	23, 35, 119
TfiI	GAWTC	1 cut(s)	467
Tru1I	TTAA	2 cut(s)	449, 495
Tru9I	TTAA	2 cut(s)	449, 495
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	3 cut(s)	395, 398, 482
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	3 cut(s)	279, 359, 556
TspGWI	ACGGA	1 cut(s)	98
XbaI	TCTAGA	1 cut(s)	470
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28
XspI	CTAG	3 cut(s)	225, 458, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.