Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0016992

Physical Location & Seq

Genomic Coordinates Forward (+)

17083600 .. 17085827

Gene Structure 2228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023037

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGGTGATGCTGCTTCGTATGCAGCGAAGAATTTGTCTTTTAACACAGAAGGGACTGACACCAAACCTTCACAAATAGCTAGGCAAGGTTTAGAGGAGGCCAAAAAGAAGAACATAGATCTAGTAATAATGGATACTGCTGGAAGGCTTCAGATAGACAAAGTACTGATGGATGAGTTGAAAGAAGTAAAGTGGGAATTGAACCCCACAGAAACTTTACTCATTGTGGATGCAATGACTGGCCAGGAAGCTGCAGCCCTGGTCACAACATTCAATGTAGAGATTGGGATTACTGGCGCTATTTTAACAAAGCTGGATGGAGATTTTAGAGGTGGAGCAGCTTTGAGTGTTAAAGAGGTTTACTTGTTGGCTTACTTTTCGTTCATAGTATCATTCTACACCTTCTGCTCCATTTACGTCTTCATCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016043 GO:0019904 GO:0022607 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051259 GO:0051291 GO:0065003 GO:0070206 GO:0070208 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SRP54 SRP54_N SRP_SPB

Protein Analysis

144

Amino Acids

15.67

Weight (kDa)

4.62

Isoelectric Point (pI)

19.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRP54	PF00448	13 - 120	6.4e-35	SRP54-type protein, GTPase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016992)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0088451
rosa_laevigata	RLG00000017376 RLG00000023037
rosa_roxburghii	Rroxscaffold_1G00035610 Rroxscaffold_3G00241820 Rroxscaffold_4G00298190
rosa_rugosa	Rorug07G0146000
rosa_samantha	Rh1AG156400 Rh2AG229300 Rh2CG467600 Rh3BG361200 Rh4BG131600 Rh5CG339100 Rh7CG442900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	241
AcsI	RAATTY	1 cut(s)	31
AcuI	CTGAAG	1 cut(s)	134
AfaI	GTAC	1 cut(s)	165
AgsI	TTSAA	3 cut(s)	181, 202, 274
AjnI	CCWGG	2 cut(s)	243, 258
AluBI	AGCT	4 cut(s)	80, 251, 313, 341
AluI	AGCT	4 cut(s)	80, 251, 313, 341
AoxI	GGCC	2 cut(s)	99, 241
ApeKI	GCWGC	5 cut(s)	11, 23, 251, 254, 338
ApoI	RAATTY	1 cut(s)	31
ArsI	GACNNNNNNTTYG	2 cut(s)	20, 52
AspLEI	GCGC	1 cut(s)	299
AsuHPI	GGTGA	1 cut(s)	17
BalI	TGGCCA	1 cut(s)	243
BbsI	GAAGAC	1 cut(s)	412
BbvI	GCAGC	4 cut(s)	35, 238, 266, 350
BccI	CCATC	2 cut(s)	163, 311
BciT130I	CCWGG	2 cut(s)	245, 260
BciVI	GTATCC	1 cut(s)	127
BfaI	CTAG	2 cut(s)	81, 122
BfmI	CTRYAG	1 cut(s)	252
BfoI	RGCGCY	1 cut(s)	300
BfuI	GTATCC	1 cut(s)	127
BglII	AGATCT	1 cut(s)	118
BisI	GCNGC	5 cut(s)	12, 24, 252, 255, 339
BlsI	GCNGC	5 cut(s)	13, 25, 253, 256, 340
BmcAI	AGTACT	1 cut(s)	165
Bme1390I	CCNGG	2 cut(s)	245, 260
BmrFI	CCNGG	2 cut(s)	245, 260
BmsI	GCATC	1 cut(s)	220
BpiI	GAAGAC	1 cut(s)	412
BsaJI	CCNNGG	1 cut(s)	258
Bse1I	ACTGG	2 cut(s)	244, 298
Bse3DI	GCAATG	1 cut(s)	240
BseBI	CCWGG	2 cut(s)	245, 260
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	4 cut(s)	178, 235, 322, 423
BseMI	GCAATG	1 cut(s)	240
BseNI	ACTGG	2 cut(s)	244, 298
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	4 cut(s)	35, 238, 266, 350
BshFI	GGCC	2 cut(s)	101, 243
BslFI	GGGAC	1 cut(s)	67
BsmFI	GGGAC	1 cut(s)	67
BsnI	GGCC	2 cut(s)	101, 243
Bsp143I	GATC	1 cut(s)	118
BspANI	GGCC	2 cut(s)	101, 243
BspMAI	CTGCAG	1 cut(s)	256
BsrDI	GCAATG	1 cut(s)	240
BsrI	ACTGG	2 cut(s)	244, 298
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	1 cut(s)	118
Bst2UI	CCWGG	2 cut(s)	245, 260
BstF5I	GGATG	4 cut(s)	178, 235, 322, 423
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	1 cut(s)	299
BstKTI	GATC	1 cut(s)	121
BstMBI	GATC	1 cut(s)	118
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstNI	CCWGG	2 cut(s)	245, 260
BstSCI	CCNGG	2 cut(s)	243, 258
BstSFI	CTRYAG	1 cut(s)	252
BstV1I	GCAGC	4 cut(s)	35, 238, 266, 350
BstV2I	GAAGAC	1 cut(s)	412
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
BsuI	GTATCC	1 cut(s)	127
BsuRI	GGCC	2 cut(s)	101, 243
BtsCI	GGATG	4 cut(s)	178, 235, 322, 423
CfoI	GCGC	1 cut(s)	299
Csp6I	GTAC	1 cut(s)	164
CviAII	CATG	1 cut(s)	429
CviJI	RGCY	9 cut(s)	80, 101, 148, 243, 251, 257, 313, 341, 371
CviKI_1	RGCY	9 cut(s)	80, 101, 148, 243, 251, 257, 313, 341, 371
CviQI	GTAC	1 cut(s)	164
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
EaeI	YGGCCR	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	134
EcoRII	CCWGG	2 cut(s)	243, 258
FaeI	CATG	1 cut(s)	432
FaiI	YATR	4 cut(s)	21, 116, 386, 430
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	1 cut(s)	428
Fnu4HI	GCNGC	5 cut(s)	12, 24, 252, 255, 339
FokI	GGATG	4 cut(s)	185, 242, 329, 410
Fsp4HI	GCNGC	5 cut(s)	12, 24, 252, 255, 339
FspBI	CTAG	2 cut(s)	81, 122
GlaI	GCGC	1 cut(s)	298
GluI	GCNGC	5 cut(s)	12, 24, 252, 255, 339
HaeII	RGCGCY	1 cut(s)	300
HaeIII	GGCC	2 cut(s)	101, 243
HhaI	GCGC	1 cut(s)	299
Hin1II	CATG	1 cut(s)	432
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	1 cut(s)	153
Hpy8I	GTNNAC	1 cut(s)	361
HpyAV	CCTTC	4 cut(s)	44, 78, 138, 412
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	3 cut(s)	23, 233, 254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HpySE526I	ACGT	1 cut(s)	417
Hsp92II	CATG	1 cut(s)	432
HspAI	GCGC	1 cut(s)	297
Kzo9I	GATC	1 cut(s)	118
LmnI	GCTCC	2 cut(s)	335, 413
LpnPI	CCDG	8 cut(s)	126, 225, 230, 245, 257, 272, 279, 299
Lsp1109I	GCAGC	4 cut(s)	35, 238, 266, 350
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	2 cut(s)	81, 122
MaeII	ACGT	1 cut(s)	417
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MboII	GAAGA	3 cut(s)	40, 121, 412
MflI	RGATCY	1 cut(s)	118
MlsI	TGGCCA	1 cut(s)	243
MluCI	AATT	2 cut(s)	31, 197
MluNI	TGGCCA	1 cut(s)	243
MnlI	CCTC	4 cut(s)	88, 91, 323, 349
Mox20I	TGGCCA	1 cut(s)	243
MscI	TGGCCA	1 cut(s)	243
MseI	TTAA	3 cut(s)	42, 305, 351
Msp20I	TGGCCA	1 cut(s)	243
MspR9I	CCNGG	2 cut(s)	245, 260
MvaI	CCWGG	2 cut(s)	245, 260
MwoI	GCNNNNNNNGC	1 cut(s)	20
NdeII	GATC	1 cut(s)	118
NlaIII	CATG	1 cut(s)	432
NmuCI	GTSAC	1 cut(s)	262
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PkrI	GCNGC	5 cut(s)	13, 25, 253, 256, 340
Psp6I	CCWGG	2 cut(s)	243, 258
PspGI	CCWGG	2 cut(s)	243, 258
PstI	CTGCAG	1 cut(s)	256
PsuI	RGATCY	1 cut(s)	118
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
SaqAI	TTAA	3 cut(s)	42, 305, 351
SatI	GCNGC	5 cut(s)	12, 24, 252, 255, 339
Sau3AI	GATC	1 cut(s)	118
ScaI	AGTACT	1 cut(s)	165
ScrFI	CCNGG	2 cut(s)	245, 260
SfaNI	GCATC	1 cut(s)	220
SfcI	CTRYAG	1 cut(s)	252
Sse9I	AATT	2 cut(s)	31, 197
SspMI	CTAG	2 cut(s)	81, 122
StyD4I	CCNGG	2 cut(s)	243, 258
TaiI	ACGT	1 cut(s)	420
TasI	AATT	2 cut(s)	31, 197
TatI	WGTACW	1 cut(s)	163
Tru1I	TTAA	3 cut(s)	42, 305, 351
Tru9I	TTAA	3 cut(s)	42, 305, 351
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	5 cut(s)	11, 23, 251, 254, 338
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	2 cut(s)	373, 412
XapI	RAATTY	1 cut(s)	31
XspI	CTAG	2 cut(s)	81, 122
ZrmI	AGTACT	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.