Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0016992

Physical Location & Seq

Genomic Coordinates Forward (+)

51718876 .. 51722541

Gene Structure 3666 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00035610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGATACTGCTGGAAGGCTTCAAATAGACAAAGTACTGATGGATGAGTTGAAAGAAGTAAAGCGGGAAATGAACCCCATAGAAAATTTACTCGTTGTGGTTGCAATGACTGGCCAGGAAGATGCAGCCCTGGTCACAACATTCAATGTAGAGATTGGGATTACTGGCGCTATTTTAACAAAGCTGGATGGAGATTCTAGAGGTGTAAAGCAAGGACAGCAGCTGCAGTCAAAGTTCCAGAGTTTCAATTTGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016043 GO:0019904 GO:0022607 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051259 GO:0051291 GO:0065003 GO:0070206 GO:0070208 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SRP54 SRP54_N SRP_SPB

Protein Analysis

85

Amino Acids

9.41

Weight (kDa)

4.99

Isoelectric Point (pI)

46.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRP54	PF00448	1 - 68	4e-21	SRP54-type protein, GTPase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016992)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0088451
rosa_laevigata	RLG00000017376 RLG00000023037
rosa_roxburghii	Rroxscaffold_1G00035610 Rroxscaffold_3G00241820 Rroxscaffold_4G00298190
rosa_rugosa	Rorug07G0146000
rosa_samantha	Rh1AG156400 Rh2AG229300 Rh2CG467600 Rh3BG361200 Rh4BG131600 Rh5CG339100 Rh7CG442900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	64
AcoI	YGGCCR	1 cut(s)	112
AcsI	RAATTY	1 cut(s)	85
AfaI	GTAC	1 cut(s)	36
AgsI	TTSAA	4 cut(s)	23, 52, 145, 247
AjnI	CCWGG	2 cut(s)	114, 129
AluBI	AGCT	2 cut(s)	184, 223
AluI	AGCT	2 cut(s)	184, 223
AlwNI	CAGNNNCTG	1 cut(s)	223
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	3 cut(s)	125, 220, 223
ApoI	RAATTY	1 cut(s)	85
AspLEI	GCGC	1 cut(s)	170
BalI	TGGCCA	1 cut(s)	114
BbvI	GCAGC	3 cut(s)	137, 210, 232
BccI	CCATC	2 cut(s)	34, 182
BciT130I	CCWGG	2 cut(s)	116, 131
BfaI	CTAG	1 cut(s)	198
BfmI	CTRYAG	1 cut(s)	224
BfoI	RGCGCY	1 cut(s)	171
BisI	GCNGC	3 cut(s)	126, 221, 224
BlsI	GCNGC	3 cut(s)	127, 222, 225
BmcAI	AGTACT	1 cut(s)	36
Bme1390I	CCNGG	2 cut(s)	116, 131
BmrFI	CCNGG	2 cut(s)	116, 131
BmsI	GCATC	1 cut(s)	112
BsaJI	CCNNGG	1 cut(s)	129
Bse1I	ACTGG	2 cut(s)	115, 169
Bse3DI	GCAATG	1 cut(s)	111
BseBI	CCWGG	2 cut(s)	116, 131
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	2 cut(s)	49, 193
BseMI	GCAATG	1 cut(s)	111
BseNI	ACTGG	2 cut(s)	115, 169
BseXI	GCAGC	3 cut(s)	137, 210, 232
BshFI	GGCC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	114
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	1 cut(s)	114
BspMAI	CTGCAG	1 cut(s)	228
BsrDI	GCAATG	1 cut(s)	111
BsrI	ACTGG	2 cut(s)	115, 169
BssECI	CCNNGG	1 cut(s)	129
Bst2UI	CCWGG	2 cut(s)	116, 131
BstF5I	GGATG	2 cut(s)	49, 193
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	170
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstNI	CCWGG	2 cut(s)	116, 131
BstSCI	CCNGG	2 cut(s)	114, 129
BstSFI	CTRYAG	1 cut(s)	224
BstV1I	GCAGC	3 cut(s)	137, 210, 232
BsuRI	GGCC	1 cut(s)	114
BtsCI	GGATG	2 cut(s)	49, 193
CaiI	CAGNNNCTG	1 cut(s)	223
CfoI	GCGC	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	35
CviJI	RGCY	5 cut(s)	19, 114, 128, 184, 223
CviKI_1	RGCY	5 cut(s)	19, 114, 128, 184, 223
CviQI	GTAC	1 cut(s)	35
EaeI	YGGCCR	1 cut(s)	112
EcoRII	CCWGG	2 cut(s)	114, 129
FaiI	YATR	1 cut(s)	80
FauI	CCCGC	1 cut(s)	57
Fnu4HI	GCNGC	3 cut(s)	126, 221, 224
FokI	GGATG	2 cut(s)	56, 200
Fsp4HI	GCNGC	3 cut(s)	126, 221, 224
FspBI	CTAG	1 cut(s)	198
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	3 cut(s)	126, 221, 224
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	114
HhaI	GCGC	1 cut(s)	170
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HinfI	GANTC	1 cut(s)	194
Hpy188III	TCNNGA	2 cut(s)	198, 238
HpyAV	CCTTC	1 cut(s)	9
HpyCH4V	TGCA	3 cut(s)	104, 125, 226
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
HspAI	GCGC	1 cut(s)	168
LpnPI	CCDG	8 cut(s)	96, 101, 116, 128, 143, 150, 170, 251
Lsp1109I	GCAGC	3 cut(s)	137, 210, 232
LweI	GCATC	1 cut(s)	112
MaeI	CTAG	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	133
MboII	GAAGA	1 cut(s)	131
MlsI	TGGCCA	1 cut(s)	114
MluCI	AATT	2 cut(s)	85, 247
MluNI	TGGCCA	1 cut(s)	114
MnlI	CCTC	2 cut(s)	194, 246
Mox20I	TGGCCA	1 cut(s)	114
MscI	TGGCCA	1 cut(s)	114
MseI	TTAA	1 cut(s)	176
Msp20I	TGGCCA	1 cut(s)	114
MspA1I	CMGCKG	1 cut(s)	223
MspR9I	CCNGG	2 cut(s)	116, 131
MvaI	CCWGG	2 cut(s)	116, 131
MwoI	GCNNNNNNNGC	1 cut(s)	217
NmuCI	GTSAC	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	194
PkrI	GCNGC	3 cut(s)	127, 222, 225
Psp6I	CCWGG	2 cut(s)	114, 129
PspGI	CCWGG	2 cut(s)	114, 129
PstI	CTGCAG	1 cut(s)	228
PstNI	CAGNNNCTG	1 cut(s)	223
PvuII	CAGCTG	1 cut(s)	223
RsaI	GTAC	1 cut(s)	36
RsaNI	GTAC	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	176
SatI	GCNGC	3 cut(s)	126, 221, 224
ScaI	AGTACT	1 cut(s)	36
ScrFI	CCNGG	2 cut(s)	116, 131
SetI	ASST	4 cut(s)	186, 205, 225, 257
SfaNI	GCATC	1 cut(s)	112
SfcI	CTRYAG	1 cut(s)	224
Sse9I	AATT	2 cut(s)	85, 247
SsiI	CCGC	1 cut(s)	64
SspMI	CTAG	1 cut(s)	198
StyD4I	CCNGG	2 cut(s)	114, 129
TasI	AATT	2 cut(s)	85, 247
TatI	WGTACW	1 cut(s)	34
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	1 cut(s)	176
Tru9I	TTAA	1 cut(s)	176
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	3 cut(s)	125, 220, 223
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	1 cut(s)	86
XapI	RAATTY	1 cut(s)	85
XbaI	TCTAGA	1 cut(s)	197
XspI	CTAG	1 cut(s)	198
ZrmI	AGTACT	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.