Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0016992

Physical Location & Seq

Genomic Coordinates Reverse (-)

63085017 .. 63089064

Gene Structure 4048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG467600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGAATTGCAACTGGGTTTTCAACACAATAGAGCTTCCCAACATCTGAAGCTTGCAATCAGCTTTATGCTCTCATTCCGTGAAAACAAATTGGCGGTTTTGACAAGAGTATTAGCCAAGGCTTGTGGTGGTGCACATTGGGTAAAAGTGCCTGTATATACAGCAGGGACTGACACCAAACCTTCACAAATAGCTAGGCAAGGTTTAGAGGAGGCCAAAAAGAAGAACATAGATGTAGTAATAATGGATACTGCTGGAAGGCTTCAGATAGACAAAGTACTGATGGATGAGTTGAAAGAAGTAAAGCGGGAATTGAACCCCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016043 GO:0019904 GO:0022607 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051259 GO:0051291 GO:0065003 GO:0070206 GO:0070208 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SRP54 SRP54_N SRP_SPB

Protein Analysis

108

Amino Acids

12.13

Weight (kDa)

9.56

Isoelectric Point (pI)

31.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRP54	PF00448	45 - 107	1.5e-16	SRP54-type protein, GTPase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0016992)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0088451
rosa_laevigata	RLG00000017376 RLG00000023037
rosa_roxburghii	Rroxscaffold_1G00035610 Rroxscaffold_3G00241820 Rroxscaffold_4G00298190
rosa_rugosa	Rorug07G0146000
rosa_samantha	Rh1AG156400 Rh2AG229300 Rh2CG467600 Rh3BG361200 Rh4BG131600 Rh5CG339100 Rh7CG442900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	95, 307
AcuI	CTGAAG	2 cut(s)	68, 248
AfaI	GTAC	1 cut(s)	279
AgsI	TTSAA	3 cut(s)	23, 295, 316
AluBI	AGCT	4 cut(s)	35, 52, 63, 194
AluI	AGCT	4 cut(s)	35, 52, 63, 194
Alw21I	GWGCWC	1 cut(s)	136
Alw44I	GTGCAC	1 cut(s)	132
AlwNI	CAGNNNCTG	1 cut(s)	170
AoxI	GGCC	1 cut(s)	213
ApaLI	GTGCAC	1 cut(s)	132
BaeGI	GKGCMC	1 cut(s)	136
Bbv12I	GWGCWC	1 cut(s)	136
BccI	CCATC	1 cut(s)	277
BciVI	GTATCC	1 cut(s)	241
BfaI	CTAG	1 cut(s)	195
BfuI	GTATCC	1 cut(s)	241
BmcAI	AGTACT	1 cut(s)	279
BmrI	ACTGGG	1 cut(s)	23
BmuI	ACTGGG	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	117
Bse1I	ACTGG	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	1 cut(s)	292
BseNI	ACTGG	1 cut(s)	18
BseRI	GAGGAG	1 cut(s)	224
BseSI	GKGCMC	1 cut(s)	136
BshFI	GGCC	1 cut(s)	215
BsiHKAI	GWGCWC	1 cut(s)	136
BslFI	GGGAC	1 cut(s)	181
BsmFI	GGGAC	1 cut(s)	181
BsnI	GGCC	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	136
BspACI	CCGC	2 cut(s)	95, 307
BspANI	GGCC	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	18
BssECI	CCNNGG	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	54
BstF5I	GGATG	1 cut(s)	292
BstSLI	GKGCMC	1 cut(s)	136
BsuI	GTATCC	1 cut(s)	241
BsuRI	GGCC	1 cut(s)	215
BtsCI	GGATG	1 cut(s)	292
Cac8I	GCNNGC	1 cut(s)	54
CaiI	CAGNNNCTG	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	278
CspCI	CAANNNNNGTGG	2 cut(s)	106, 141
CviJI	RGCY	8 cut(s)	35, 52, 63, 116, 122, 194, 215, 262
CviKI_1	RGCY	8 cut(s)	35, 52, 63, 116, 122, 194, 215, 262
CviQI	GTAC	1 cut(s)	278
Eco130I	CCWWGG	1 cut(s)	117
Eco57I	CTGAAG	2 cut(s)	68, 248
EcoT14I	CCWWGG	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	117
FaiI	YATR	5 cut(s)	68, 157, 159, 230, 325
FaqI	GGGAC	1 cut(s)	181
FauI	CCCGC	1 cut(s)	300
FokI	GGATG	1 cut(s)	299
FspBI	CTAG	1 cut(s)	195
HaeIII	GGCC	1 cut(s)	215
HindIII	AAGCTT	1 cut(s)	50
Hpy166II	GTNNAC	1 cut(s)	134
Hpy188I	TCNGA	2 cut(s)	48, 267
Hpy8I	GTNNAC	1 cut(s)	134
HpyAV	CCTTC	2 cut(s)	192, 252
HpyCH4V	TGCA	3 cut(s)	10, 56, 134
LpnPI	CCDG	3 cut(s)	150, 165, 240
MaeI	CTAG	1 cut(s)	195
MboII	GAAGA	1 cut(s)	235
MhlI	GDGCHC	1 cut(s)	136
MluCI	AATT	3 cut(s)	5, 89, 311
MnlI	CCTC	2 cut(s)	202, 205
PstNI	CAGNNNCTG	1 cut(s)	170
RsaI	GTAC	1 cut(s)	279
RsaNI	GTAC	1 cut(s)	278
ScaI	AGTACT	1 cut(s)	279
SduI	GDGCHC	1 cut(s)	136
SetI	ASST	6 cut(s)	37, 54, 65, 184, 196, 205
Sse9I	AATT	3 cut(s)	5, 89, 311
SsiI	CCGC	2 cut(s)	95, 307
SspMI	CTAG	1 cut(s)	195
StyI	CCWWGG	1 cut(s)	117
TasI	AATT	3 cut(s)	5, 89, 311
TatI	WGTACW	1 cut(s)	277
TspGWI	ACGGA	1 cut(s)	68
VneI	GTGCAC	1 cut(s)	132
XspI	CTAG	1 cut(s)	195
ZrmI	AGTACT	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.