Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0016992

Physical Location & Seq

Genomic Coordinates Forward (+)

29252567 .. 29264545

Gene Structure 11979 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG156400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGAATCACCGGCCAACAGAATACTTAAAAGGTATGGTTTTGGTTTTGATGAGGGTTCCACTTTTTTCCCCTTCTTGGCTCAGTTTTCCAATACATGGGCTCAATCACACTCACTTTTAGTAAAAGTGCCTGTATATACAGCAGGGACTGACACCAAACCTTCACAAATAGCTAGGCAAGGTTTAGAGGAGGCCAAAAAGAAGAACATAGATCTAGTAATAATGGATACTGCTGGAAGGCTTCAGTGTTTCTCAAACTCTTTCTATACAGCGCTAGCATCTTCCAAGACAAGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016043 GO:0019904 GO:0022607 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051259 GO:0051291 GO:0065003 GO:0070206 GO:0070208 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SRP54 SRP54_N SRP_SPB

Protein Analysis

99

Amino Acids

10.93

Weight (kDa)

9.21

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRP54	PF00448	40 - 84	8.9e-10	SRP54-type protein, GTPase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016992)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0088451
rosa_laevigata	RLG00000017376 RLG00000023037
rosa_roxburghii	Rroxscaffold_1G00035610 Rroxscaffold_3G00241820 Rroxscaffold_4G00298190
rosa_rugosa	Rorug07G0146000
rosa_samantha	Rh1AG156400 Rh2AG229300 Rh2CG467600 Rh3BG361200 Rh4BG131600 Rh5CG339100 Rh7CG442900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	96
AcoI	YGGCCR	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	227
AfeI	AGCGCT	1 cut(s)	273
AfiI	CCNNNNNNNGG	2 cut(s)	76, 96
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
AlwNI	CAGNNNCTG	1 cut(s)	149
Aor51HI	AGCGCT	1 cut(s)	273
AoxI	GGCC	2 cut(s)	12, 192
AspLEI	GCGC	1 cut(s)	274
AsuNHI	GCTAGC	1 cut(s)	274
BanII	GRGCYC	1 cut(s)	103
BciVI	GTATCC	1 cut(s)	220
BfaI	CTAG	3 cut(s)	174, 215, 275
BfoI	RGCGCY	1 cut(s)	275
BfuI	GTATCC	1 cut(s)	220
BglII	AGATCT	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	58
BmsI	GCATC	1 cut(s)	287
BmtI	GCTAGC	1 cut(s)	278
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 96
Bse118I	RCCGGY	1 cut(s)	10
BseLI	CCNNNNNNNGG	2 cut(s)	76, 96
BseMII	CTCAG	1 cut(s)	95
BseRI	GAGGAG	1 cut(s)	203
BshFI	GGCC	2 cut(s)	14, 194
BsiSI	CCGG	1 cut(s)	11
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	2 cut(s)	76, 96
BsmFI	GGGAC	1 cut(s)	160
BsnI	GGCC	2 cut(s)	14, 194
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp143I	GATC	1 cut(s)	211
BspANI	GGCC	2 cut(s)	14, 194
BspCNI	CTCAG	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	58
BspOI	GCTAGC	1 cut(s)	278
BsrFI	RCCGGY	1 cut(s)	10
BssAI	RCCGGY	1 cut(s)	10
BssMI	GATC	1 cut(s)	211
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	1 cut(s)	81
BstH2I	RGCGCY	1 cut(s)	275
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	1 cut(s)	214
BstMBI	GATC	1 cut(s)	211
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BsuI	GTATCC	1 cut(s)	220
BsuRI	GGCC	2 cut(s)	14, 194
BtsIMutI	CAGTG	1 cut(s)	251
Cac8I	GCNNGC	1 cut(s)	276
CaiI	CAGNNNCTG	1 cut(s)	149
CfoI	GCGC	1 cut(s)	274
Cfr10I	RCCGGY	1 cut(s)	10
CviAII	CATG	2 cut(s)	96, 297
CviJI	RGCY	6 cut(s)	14, 80, 101, 173, 194, 241
CviKI_1	RGCY	6 cut(s)	14, 80, 101, 173, 194, 241
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
EaeI	YGGCCR	1 cut(s)	12
Eco24I	GRGCYC	1 cut(s)	103
Eco47III	AGCGCT	1 cut(s)	273
Eco57I	CTGAAG	1 cut(s)	227
EcoT38I	GRGCYC	1 cut(s)	103
FaeI	CATG	2 cut(s)	99, 300
FaiI	YATR	7 cut(s)	36, 97, 136, 138, 209, 267, 298
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	2 cut(s)	95, 296
FriOI	GRGCYC	1 cut(s)	103
FspBI	CTAG	3 cut(s)	174, 215, 275
GlaI	GCGC	1 cut(s)	273
HaeII	RGCGCY	1 cut(s)	275
HaeIII	GGCC	2 cut(s)	14, 194
HapII	CCGG	1 cut(s)	11
HhaI	GCGC	1 cut(s)	274
Hin1II	CATG	2 cut(s)	99, 300
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	1 cut(s)	11
HpyAV	CCTTC	3 cut(s)	82, 171, 231
HpyCH4V	TGCA	1 cut(s)	296
HpyF3I	CTNAG	1 cut(s)	81
Hsp92II	CATG	2 cut(s)	99, 300
HspAI	GCGC	1 cut(s)	272
Kzo9I	GATC	1 cut(s)	211
LpnPI	CCDG	4 cut(s)	24, 129, 144, 219
LweI	GCATC	1 cut(s)	287
MaeI	CTAG	3 cut(s)	174, 215, 275
MalI	GATC	1 cut(s)	213
MboI	GATC	1 cut(s)	211
MboII	GAAGA	2 cut(s)	214, 273
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	1 cut(s)	103
MnlI	CCTC	3 cut(s)	46, 181, 184
MseI	TTAA	1 cut(s)	27
MspI	CCGG	1 cut(s)	11
NdeII	GATC	1 cut(s)	211
NheI	GCTAGC	1 cut(s)	274
NlaIII	CATG	2 cut(s)	99, 300
NlaIV	GGNNCC	1 cut(s)	58
PfeI	GAWTC	1 cut(s)	5
PflMI	CCANNNNNTGG	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	58
PstNI	CAGNNNCTG	1 cut(s)	149
PsuI	RGATCY	1 cut(s)	211
SaqAI	TTAA	1 cut(s)	27
Sau3AI	GATC	1 cut(s)	211
SduI	GDGCHC	1 cut(s)	103
SetI	ASST	4 cut(s)	35, 163, 175, 184
SfaNI	GCATC	1 cut(s)	287
SspMI	CTAG	3 cut(s)	174, 215, 275
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	1 cut(s)	251
TspRI	CASTG	1 cut(s)	251
Van91I	CCANNNNNTGG	1 cut(s)	96
XspI	CTAG	3 cut(s)	174, 215, 275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.