Rh3BG361200

Signal recognition particle 54 kDa protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0016992
Physical Location & Seq
Reverse (-)
43748162 .. 43750043
1882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG361200.1

Sequence Viewer

Length: 441 bp
ATGCTCTCATTCCTTGAAAACAAATTGGCGGTTTTGACAAGAGTATTAGCCAAGGCTTGTGGTGATGCACATTGGGTAAAAGTGCCTGTATATACAGCAGGGACTGACACCAAACCTTCACAAATAGCTAGGCAAGGTTTAGAGGAGGCCAAAAAGAAGAACATAGATGAAGTAATAATGGATACTGCTGGAAGGCTTCAGATAGACAAAGTATTGATGGATGAGTTGAAAGAAGTAAAGCGGGAAATGAACCCCACAGAAACTTTACTCGTTGTGGATGCAATGACTGGCCAGGAAGCTGCAGCCCTGGTCACAACATTCAATGTAGAGATTGGGATTACTGGCGCTATTTTAACAAAGCTAGTTGGAGATTCTAGAGGTGGAGCAGCTTTGAGTGTTAAAGAGGTTTACTTGTTGGCTTACTTTTCCTTCATAGTGTAA

Protein Analysis

146

Amino Acids

15.87

Weight (kDa)

5.47

Isoelectric Point (pI)

23.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP54 PF00448 24 - 136 5.1e-36 SRP54-type protein, GTPase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 29, 241
AcoI YGGCCR 1 cut(s) 289
AcuI CTGAAG 1 cut(s) 182
AgsI TTSAA 3 cut(s) 17, 229, 322
AjnI CCWGG 2 cut(s) 291, 306
AluBI AGCT 4 cut(s) 128, 299, 361, 389
AluI AGCT 4 cut(s) 128, 299, 361, 389
AlwNI CAGNNNCTG 1 cut(s) 104
AoxI GGCC 2 cut(s) 147, 289
ApeKI GCWGC 3 cut(s) 299, 302, 386
AspLEI GCGC 1 cut(s) 347
AsuHPI GGTGA 1 cut(s) 74
BalI TGGCCA 1 cut(s) 291
BbvI GCAGC 3 cut(s) 286, 314, 398
BccI CCATC 1 cut(s) 211
BciT130I CCWGG 2 cut(s) 293, 308
BciVI GTATCC 1 cut(s) 175
BfaI CTAG 3 cut(s) 129, 362, 375
BfmI CTRYAG 1 cut(s) 300
BfoI RGCGCY 1 cut(s) 348
BfuI GTATCC 1 cut(s) 175
BisI GCNGC 3 cut(s) 300, 303, 387
BlsI GCNGC 3 cut(s) 301, 304, 388
Bme1390I CCNGG 2 cut(s) 293, 308
BmrFI CCNGG 2 cut(s) 293, 308
BmsI GCATC 2 cut(s) 55, 268
BsaJI CCNNGG 2 cut(s) 51, 306
Bse1I ACTGG 2 cut(s) 292, 346
Bse3DI GCAATG 1 cut(s) 288
BseBI CCWGG 2 cut(s) 293, 308
BseDI CCNNGG 2 cut(s) 51, 306
BseGI GGATG 2 cut(s) 226, 283
BseMI GCAATG 1 cut(s) 288
BseNI ACTGG 2 cut(s) 292, 346
BseRI GAGGAG 1 cut(s) 158
BseXI GCAGC 3 cut(s) 286, 314, 398
BshFI GGCC 2 cut(s) 149, 291
BslFI GGGAC 1 cut(s) 115
BsmFI GGGAC 1 cut(s) 115
BsnI GGCC 2 cut(s) 149, 291
BspACI CCGC 2 cut(s) 29, 241
BspANI GGCC 2 cut(s) 149, 291
BspMAI CTGCAG 1 cut(s) 304
BsrDI GCAATG 1 cut(s) 288
BsrI ACTGG 2 cut(s) 292, 346
BssECI CCNNGG 2 cut(s) 51, 306
BssT1I CCWWGG 1 cut(s) 51
Bst2UI CCWGG 2 cut(s) 293, 308
BstF5I GGATG 2 cut(s) 226, 283
BstH2I RGCGCY 1 cut(s) 348
BstHHI GCGC 1 cut(s) 347
BstNI CCWGG 2 cut(s) 293, 308
BstSCI CCNGG 2 cut(s) 291, 306
BstSFI CTRYAG 1 cut(s) 300
BstV1I GCAGC 3 cut(s) 286, 314, 398
BsuI GTATCC 1 cut(s) 175
BsuRI GGCC 2 cut(s) 149, 291
BtsCI GGATG 2 cut(s) 226, 283
CaiI CAGNNNCTG 1 cut(s) 104
CfoI GCGC 1 cut(s) 347
CspCI CAANNNNNGTGG 2 cut(s) 40, 75
EaeI YGGCCR 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 182
EcoRII CCWGG 2 cut(s) 291, 306
EcoT14I CCWWGG 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 51
FaiI YATR 4 cut(s) 91, 93, 164, 434
FaqI GGGAC 1 cut(s) 115
FauI CCCGC 1 cut(s) 234
Fnu4HI GCNGC 3 cut(s) 300, 303, 387
FokI GGATG 2 cut(s) 233, 290
Fsp4HI GCNGC 3 cut(s) 300, 303, 387
FspBI CTAG 3 cut(s) 129, 362, 375
GlaI GCGC 1 cut(s) 346
GluI GCNGC 3 cut(s) 300, 303, 387
HaeII RGCGCY 1 cut(s) 348
HaeIII GGCC 2 cut(s) 149, 291
HhaI GCGC 1 cut(s) 347
Hin6I GCGC 1 cut(s) 345
HinP1I GCGC 1 cut(s) 345
HinfI GANTC 1 cut(s) 371
HphI GGTGA 1 cut(s) 74
Hpy166II GTNNAC 1 cut(s) 409
Hpy188I TCNGA 1 cut(s) 201
Hpy188III TCNNGA 1 cut(s) 375
Hpy8I GTNNAC 1 cut(s) 409
HpyAV CCTTC 3 cut(s) 126, 186, 439
HpyCH4V TGCA 3 cut(s) 68, 281, 302
HspAI GCGC 1 cut(s) 345
LmnI GCTCC 1 cut(s) 383
LpnPI CCDG 9 cut(s) 84, 99, 174, 273, 278, 293, 305, 320, 327
Lsp1109I GCAGC 3 cut(s) 286, 314, 398
LweI GCATC 2 cut(s) 55, 268
MaeI CTAG 3 cut(s) 129, 362, 375
MaeIII GTNAC 1 cut(s) 310
MboII GAAGA 1 cut(s) 169
MlsI TGGCCA 1 cut(s) 291
MluCI AATT 1 cut(s) 23
MluNI TGGCCA 1 cut(s) 291
MmeI TCCRAC 1 cut(s) 346
MnlI CCTC 4 cut(s) 136, 139, 371, 397
Mox20I TGGCCA 1 cut(s) 291
MscI TGGCCA 1 cut(s) 291
MseI TTAA 2 cut(s) 353, 399
Msp20I TGGCCA 1 cut(s) 291
MspR9I CCNGG 2 cut(s) 293, 308
MvaI CCWGG 2 cut(s) 293, 308
NmuCI GTSAC 1 cut(s) 310
PfeI GAWTC 1 cut(s) 371
PkrI GCNGC 3 cut(s) 301, 304, 388
Psp6I CCWGG 2 cut(s) 291, 306
PspGI CCWGG 2 cut(s) 291, 306
PstI CTGCAG 1 cut(s) 304
PstNI CAGNNNCTG 1 cut(s) 104
SaqAI TTAA 2 cut(s) 353, 399
SatI GCNGC 3 cut(s) 300, 303, 387
ScrFI CCNGG 2 cut(s) 293, 308
SetI ASST 8 cut(s) 118, 130, 139, 301, 363, 382, 391, 408
SfaNI GCATC 2 cut(s) 55, 268
SfcI CTRYAG 1 cut(s) 300
Sse9I AATT 1 cut(s) 23
SsiI CCGC 2 cut(s) 29, 241
SspMI CTAG 3 cut(s) 129, 362, 375
StyD4I CCNGG 2 cut(s) 291, 306
StyI CCWWGG 1 cut(s) 51
TasI AATT 1 cut(s) 23
TfiI GAWTC 1 cut(s) 371
Tru1I TTAA 2 cut(s) 353, 399
Tru9I TTAA 2 cut(s) 353, 399
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 3 cut(s) 299, 302, 386
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 3 cut(s) 183, 263, 421
XbaI TCTAGA 1 cut(s) 374
XspI CTAG 3 cut(s) 129, 362, 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.