Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0095201 RchiOBHm_Chr6g0285881 |
| rosa_laevigata | RLG00000000751 RLG00000002295 RLG00000010237 RLG00000025502 |
| rosa_multiflora | Rmu_sc0002129.1_g000014 |
| rosa_roxburghii | Rroxscaffold_1G00028370 Rroxscaffold_5G00349650 |
| rosa_rugosa | Rorug02G0529200 |
| rosa_samantha | Rh1DG087100 Rh2AG140000 Rh2BG143400 Rh2DG097800 Rh3CG363800 Rh3DG316300 Rh4AG097200 Rh4CG106500 Rh6CG292100 Rh6DG284200 Rh7CG172400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 2 cut(s) | 51, 64 |
| AfaI | GTAC | 2 cut(s) | 5, 300 |
| AhlI | ACTAGT | 1 cut(s) | 191 |
| AjnI | CCWGG | 1 cut(s) | 111 |
| AluBI | AGCT | 2 cut(s) | 133, 282 |
| AluI | AGCT | 2 cut(s) | 133, 282 |
| Alw21I | GWGCWC | 1 cut(s) | 284 |
| Ama87I | CYCGRG | 1 cut(s) | 137 |
| AoxI | GGCC | 1 cut(s) | 291 |
| ApoI | RAATTY | 2 cut(s) | 51, 64 |
| AsuHPI | GGTGA | 1 cut(s) | 167 |
| AvaI | CYCGRG | 1 cut(s) | 137 |
| BanII | GRGCYC | 1 cut(s) | 284 |
| Bbv12I | GWGCWC | 1 cut(s) | 284 |
| BciT130I | CCWGG | 1 cut(s) | 113 |
| BcuI | ACTAGT | 1 cut(s) | 191 |
| BfaI | CTAG | 1 cut(s) | 192 |
| Bme1390I | CCNGG | 1 cut(s) | 113 |
| BmeT110I | CYCGRG | 1 cut(s) | 137 |
| BmrFI | CCNGG | 1 cut(s) | 113 |
| BmsI | GCATC | 3 cut(s) | 19, 112, 135 |
| BpmI | CTGGAG | 1 cut(s) | 138 |
| BpuEI | CTTGAG | 1 cut(s) | 268 |
| BsaAI | YACGTR | 1 cut(s) | 35 |
| BsaJI | CCNNGG | 1 cut(s) | 294 |
| Bse3DI | GCAATG | 1 cut(s) | 108 |
| BseBI | CCWGG | 1 cut(s) | 113 |
| BseDI | CCNNGG | 1 cut(s) | 294 |
| BseGI | GGATG | 1 cut(s) | 34 |
| BseMI | GCAATG | 1 cut(s) | 108 |
| BseMII | CTCAG | 2 cut(s) | 48, 210 |
| BseRI | GAGGAG | 2 cut(s) | 173, 277 |
| BshFI | GGCC | 1 cut(s) | 293 |
| BsiHKAI | GWGCWC | 1 cut(s) | 284 |
| BsiHKCI | CYCGRG | 1 cut(s) | 137 |
| BsnI | GGCC | 1 cut(s) | 293 |
| BsoBI | CYCGRG | 1 cut(s) | 137 |
| Bsp1286I | GDGCHC | 1 cut(s) | 284 |
| Bsp143I | GATC | 1 cut(s) | 303 |
| BspANI | GGCC | 1 cut(s) | 293 |
| BspCNI | CTCAG | 2 cut(s) | 49, 211 |
| BsrDI | GCAATG | 1 cut(s) | 108 |
| BssECI | CCNNGG | 1 cut(s) | 294 |
| BssMI | GATC | 1 cut(s) | 303 |
| BssT1I | CCWWGG | 1 cut(s) | 294 |
| Bst2UI | CCWGG | 1 cut(s) | 113 |
| BstBAI | YACGTR | 1 cut(s) | 35 |
| BstDEI | CTNAG | 2 cut(s) | 57, 219 |
| BstF5I | GGATG | 1 cut(s) | 34 |
| BstKTI | GATC | 1 cut(s) | 306 |
| BstMBI | GATC | 1 cut(s) | 303 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 122 |
| BstNI | CCWGG | 1 cut(s) | 113 |
| BstSCI | CCNGG | 1 cut(s) | 111 |
| BsuRI | GGCC | 1 cut(s) | 293 |
| BtsCI | GGATG | 1 cut(s) | 34 |
| Csp6I | GTAC | 2 cut(s) | 4, 299 |
| CviJI | RGCY | 6 cut(s) | 80, 116, 133, 212, 282, 293 |
| CviKI_1 | RGCY | 6 cut(s) | 80, 116, 133, 212, 282, 293 |
| CviQI | GTAC | 2 cut(s) | 4, 299 |
| DdeI | CTNAG | 2 cut(s) | 57, 219 |
| DpnI | GATC | 1 cut(s) | 305 |
| DpnII | GATC | 1 cut(s) | 303 |
| Ecl136II | GAGCTC | 1 cut(s) | 282 |
| Eco130I | CCWWGG | 1 cut(s) | 294 |
| Eco24I | GRGCYC | 1 cut(s) | 284 |
| Eco53kI | GAGCTC | 1 cut(s) | 282 |
| Eco88I | CYCGRG | 1 cut(s) | 137 |
| EcoICRI | GAGCTC | 1 cut(s) | 282 |
| EcoRI | GAATTC | 2 cut(s) | 51, 64 |
| EcoRII | CCWGG | 1 cut(s) | 111 |
| EcoT14I | CCWWGG | 1 cut(s) | 294 |
| EcoT22I | ATGCAT | 1 cut(s) | 127 |
| EcoT38I | GRGCYC | 1 cut(s) | 284 |
| ErhI | CCWWGG | 1 cut(s) | 294 |
| FaiI | YATR | 2 cut(s) | 86, 99 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 230, 262 |
| FokI | GGATG | 1 cut(s) | 41 |
| FriOI | GRGCYC | 1 cut(s) | 284 |
| FspBI | CTAG | 1 cut(s) | 192 |
| GsuI | CTGGAG | 1 cut(s) | 138 |
| HaeIII | GGCC | 1 cut(s) | 293 |
| HphI | GGTGA | 1 cut(s) | 167 |
| Hpy188I | TCNGA | 1 cut(s) | 308 |
| Hpy188III | TCNNGA | 2 cut(s) | 56, 218 |
| HpyCH4IV | ACGT | 1 cut(s) | 34 |
| HpyCH4V | TGCA | 6 cut(s) | 9, 32, 101, 106, 125, 277 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 122 |
| HpyF3I | CTNAG | 2 cut(s) | 57, 219 |
| HpySE526I | ACGT | 1 cut(s) | 34 |
| Kzo9I | GATC | 1 cut(s) | 303 |
| LmnI | GCTCC | 1 cut(s) | 130 |
| LpnPI | CCDG | 6 cut(s) | 69, 98, 102, 125, 231, 270 |
| LweI | GCATC | 3 cut(s) | 19, 112, 135 |
| MaeI | CTAG | 1 cut(s) | 192 |
| MaeII | ACGT | 1 cut(s) | 34 |
| MalI | GATC | 1 cut(s) | 305 |
| MboI | GATC | 1 cut(s) | 303 |
| MhlI | GDGCHC | 1 cut(s) | 284 |
| MluCI | AATT | 2 cut(s) | 51, 64 |
| MnlI | CCTC | 6 cut(s) | 54, 146, 151, 160, 243, 255 |
| Mph1103I | ATGCAT | 1 cut(s) | 127 |
| MspR9I | CCNGG | 1 cut(s) | 113 |
| MvaI | CCWGG | 1 cut(s) | 113 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 122 |
| NdeII | GATC | 1 cut(s) | 303 |
| NsiI | ATGCAT | 1 cut(s) | 127 |
| Ppu21I | YACGTR | 1 cut(s) | 35 |
| Psp124BI | GAGCTC | 1 cut(s) | 284 |
| Psp6I | CCWGG | 1 cut(s) | 111 |
| PspGI | CCWGG | 1 cut(s) | 111 |
| RsaI | GTAC | 2 cut(s) | 5, 300 |
| RsaNI | GTAC | 2 cut(s) | 4, 299 |
| SacI | GAGCTC | 1 cut(s) | 284 |
| Sau3AI | GATC | 1 cut(s) | 303 |
| ScrFI | CCNGG | 1 cut(s) | 113 |
| SduI | GDGCHC | 1 cut(s) | 284 |
| SetI | ASST | 8 cut(s) | 37, 42, 135, 157, 259, 275, 284, 300 |
| SfaNI | GCATC | 3 cut(s) | 19, 112, 135 |
| SmlI | CTYRAG | 1 cut(s) | 247 |
| SmoI | CTYRAG | 1 cut(s) | 247 |
| SpeI | ACTAGT | 1 cut(s) | 191 |
| Sse9I | AATT | 2 cut(s) | 51, 64 |
| SspMI | CTAG | 1 cut(s) | 192 |
| SstI | GAGCTC | 1 cut(s) | 284 |
| StyD4I | CCNGG | 1 cut(s) | 111 |
| StyI | CCWWGG | 1 cut(s) | 294 |
| TaiI | ACGT | 1 cut(s) | 37 |
| TasI | AATT | 2 cut(s) | 51, 64 |
| TatI | WGTACW | 1 cut(s) | 3 |
| XapI | RAATTY | 2 cut(s) | 51, 64 |
| XspI | CTAG | 1 cut(s) | 192 |
| Zsp2I | ATGCAT | 1 cut(s) | 127 |