Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010619

Physical Location & Seq

Genomic Coordinates Reverse (-)

36157225 .. 36158214

Gene Structure 990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00028370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGACCGCTTCTCCGACGAGCTCCCTACTAAGTCCCTCTCCCTCTCCAATCTGGTCCGCCCGATCGCCCGCCGCCATGGATTTCGCCCCACCCATTTTACCCTCTCCGCCTCATCGCATCACCCGCCCTCATTCTCCACTCTTGTCCTCTTCTCCTTCATCGCAATCTCTTCATCCTCCTCCTCATCATTTAACATTCATGCTCTTGCGATCAAAGCAACGAGCTTTTTCGATGTGTTTGTTGGGATATCTTTACTTGATATGTACCGCAAACCGGGTCTTGTGGGGGATGCACATAAGGTGTTTGATAGAATGCCTAAGAGGAATTCGGTTTCATGGGCTACTATGATTTATGGGTATGTAATACAACGCCTAGATGGAGATGCGTTGGAGCTTCTCGTGTTGATGCGTAGAGGTGAGGAGAGTGAGGGAGAGAATGACTTTATTTTGAGTAGTGCTGTGAGTGCCTTGGTTGCTCTTGAGTTTGTTGATACGGGGAAGCAACTTGAGGCTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

172

Amino Acids

19.1

Weight (kDa)

7.03

Isoelectric Point (pI)

38.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010619)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0095201 RchiOBHm_Chr6g0285881
rosa_laevigata	RLG00000000751 RLG00000002295 RLG00000010237 RLG00000025502
rosa_multiflora	Rmu_sc0002129.1_g000014
rosa_roxburghii	Rroxscaffold_1G00028370 Rroxscaffold_5G00349650
rosa_rugosa	Rorug02G0529200
rosa_samantha	Rh1DG087100 Rh2AG140000 Rh2BG143400 Rh2DG097800 Rh3CG363800 Rh3DG316300 Rh4AG097200 Rh4CG106500 Rh6CG292100 Rh6DG284200 Rh7CG172400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	7, 58, 70, 73, 108, 125, 268
AcsI	RAATTY	1 cut(s)	325
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	274
AluBI	AGCT	3 cut(s)	22, 225, 394
AluI	AGCT	3 cut(s)	22, 225, 394
Alw21I	GWGCWC	1 cut(s)	24
ApoI	RAATTY	1 cut(s)	325
AspS9I	GGNCC	2 cut(s)	4, 55
AsuC2I	CCSGG	1 cut(s)	276
AsuHPI	GGTGA	2 cut(s)	113, 428
AvaII	GGWCC	2 cut(s)	4, 55
BanII	GRGCYC	1 cut(s)	24
BauI	CACGAG	1 cut(s)	398
Bbv12I	GWGCWC	1 cut(s)	24
BccI	CCATC	1 cut(s)	371
BcnI	CCSGG	1 cut(s)	276
BfaI	CTAG	2 cut(s)	374, 513
BisI	GCNGC	1 cut(s)	73
BlsI	GCNGC	1 cut(s)	74
Bme1390I	CCNGG	1 cut(s)	276
Bme18I	GGWCC	2 cut(s)	4, 55
BmgT120I	GGNCC	2 cut(s)	4, 55
BmrFI	CCNGG	1 cut(s)	276
BmsI	GCATC	4 cut(s)	127, 280, 373, 396
BpuEI	CTTGAG	1 cut(s)	500
BpuMI	CCSGG	1 cut(s)	276
BsaJI	CCNNGG	2 cut(s)	76, 468
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
BseDI	CCNNGG	2 cut(s)	76, 468
BseGI	GGATG	2 cut(s)	173, 295
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseRI	GAGGAG	3 cut(s)	169, 172, 434
Bsh1285I	CGRYCG	1 cut(s)	66
BsiEI	CGRYCG	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	275
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmFI	GGGAC	1 cut(s)	19
BsmI	GAATGC	1 cut(s)	318
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp143I	GATC	2 cut(s)	63, 210
Bsp19I	CCATGG	1 cut(s)	76
BspACI	CCGC	7 cut(s)	7, 58, 70, 73, 108, 125, 268
BssECI	CCNNGG	2 cut(s)	76, 468
BssMI	GATC	2 cut(s)	63, 210
BssSI	CACGAG	1 cut(s)	398
BssT1I	CCWWGG	2 cut(s)	76, 468
Bst2BI	CACGAG	1 cut(s)	398
Bst6I	CTCTTC	2 cut(s)	155, 175
BstC8I	GCNNGC	1 cut(s)	70
BstDEI	CTNAG	2 cut(s)	30, 318
BstDSI	CCRYGG	1 cut(s)	76
BstF5I	GGATG	2 cut(s)	173, 295
BstKTI	GATC	2 cut(s)	66, 213
BstMBI	GATC	2 cut(s)	63, 210
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	4 cut(s)	124, 215, 464, 473
BstSCI	CCNGG	1 cut(s)	274
BtgI	CCRYGG	1 cut(s)	76
BtgZI	GCGATG	2 cut(s)	99, 145
BtsCI	GGATG	2 cut(s)	173, 295
Cac8I	GCNNGC	1 cut(s)	70
Cfr13I	GGNCC	2 cut(s)	4, 55
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	3 cut(s)	77, 200, 336
CviJI	RGCY	5 cut(s)	22, 225, 341, 394, 512
CviKI_1	RGCY	5 cut(s)	22, 225, 341, 394, 512
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	2 cut(s)	30, 318
DpnI	GATC	2 cut(s)	65, 212
DpnII	GATC	2 cut(s)	63, 210
Eam1104I	CTCTTC	2 cut(s)	155, 175
EarI	CTCTTC	2 cut(s)	155, 175
EciI	GGCGGA	2 cut(s)	47, 97
Ecl136II	GAGCTC	1 cut(s)	22
Eco130I	CCWWGG	2 cut(s)	76, 468
Eco24I	GRGCYC	1 cut(s)	24
Eco32I	GATATC	1 cut(s)	249
Eco47I	GGWCC	2 cut(s)	4, 55
Eco53kI	GAGCTC	1 cut(s)	22
EcoICRI	GAGCTC	1 cut(s)	22
EcoRI	GAATTC	1 cut(s)	325
EcoRV	GATATC	1 cut(s)	249
EcoT14I	CCWWGG	2 cut(s)	76, 468
EcoT38I	GRGCYC	1 cut(s)	24
ErhI	CCWWGG	2 cut(s)	76, 468
FaeI	CATG	3 cut(s)	80, 203, 339
FaiI	YATR	8 cut(s)	78, 201, 263, 297, 337, 347, 354, 360
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	3 cut(s)	76, 199, 335
FauI	CCCGC	2 cut(s)	77, 132
Fnu4HI	GCNGC	1 cut(s)	73
FokI	GGATG	2 cut(s)	160, 302
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	1 cut(s)	73
FspBI	CTAG	2 cut(s)	374, 513
GluI	GCNGC	1 cut(s)	73
HapII	CCGG	1 cut(s)	275
Hin1II	CATG	3 cut(s)	80, 203, 339
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	2 cut(s)	113, 428
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	1 cut(s)	479
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	1 cut(s)	166
HpyCH4V	TGCA	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	4 cut(s)	124, 215, 464, 473
HpyF3I	CTNAG	2 cut(s)	30, 318
Hsp92II	CATG	3 cut(s)	80, 203, 339
Kzo9I	GATC	2 cut(s)	63, 210
LmnI	GCTCC	2 cut(s)	27, 391
LpnPI	CCDG	2 cut(s)	38, 288
LweI	GCATC	4 cut(s)	127, 280, 373, 396
MaeI	CTAG	2 cut(s)	374, 513
MalI	GATC	2 cut(s)	65, 212
MboI	GATC	2 cut(s)	63, 210
MboII	GAAGA	2 cut(s)	142, 162
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	1 cut(s)	325
MmeI	TCCRAC	2 cut(s)	39, 369
MseI	TTAA	1 cut(s)	192
MspI	CCGG	1 cut(s)	275
MspR9I	CCNGG	1 cut(s)	276
Mva1269I	GAATGC	1 cut(s)	318
MwoI	GCNNNNNNNGC	4 cut(s)	124, 215, 464, 473
NciI	CCSGG	1 cut(s)	276
NcoI	CCATGG	1 cut(s)	76
NdeII	GATC	2 cut(s)	63, 210
NlaIII	CATG	3 cut(s)	80, 203, 339
PctI	GAATGC	1 cut(s)	318
PkrI	GCNGC	1 cut(s)	74
Ple19I	CGATCG	1 cut(s)	66
Psp124BI	GAGCTC	1 cut(s)	24
PspPI	GGNCC	2 cut(s)	4, 55
PvuI	CGATCG	1 cut(s)	66
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SacI	GAGCTC	1 cut(s)	24
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	1 cut(s)	73
Sau3AI	GATC	2 cut(s)	63, 210
Sau96I	GGNCC	2 cut(s)	4, 55
ScrFI	CCNGG	1 cut(s)	276
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	6 cut(s)	24, 227, 303, 396, 418, 518
SfaNI	GCATC	4 cut(s)	127, 280, 373, 396
SinI	GGWCC	2 cut(s)	4, 55
SmlI	CTYRAG	2 cut(s)	479, 506
SmoI	CTYRAG	2 cut(s)	479, 506
Sse9I	AATT	1 cut(s)	325
SsiI	CCGC	7 cut(s)	7, 58, 70, 73, 108, 125, 268
SspMI	CTAG	2 cut(s)	374, 513
SstI	GAGCTC	1 cut(s)	24
StyD4I	CCNGG	1 cut(s)	274
StyI	CCWWGG	2 cut(s)	76, 468
TaqI	TCGA	1 cut(s)	231
TasI	AATT	1 cut(s)	325
TauI	GCSGC	1 cut(s)	75
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TspDTI	ATGAA	4 cut(s)	148, 162, 188, 324
VpaK11BI	GGWCC	2 cut(s)	4, 55
XapI	RAATTY	1 cut(s)	325
XspI	CTAG	2 cut(s)	374, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.