Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0010619

Physical Location & Seq

Genomic Coordinates Forward (+)

4958349 .. 4959468

Gene Structure 1120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000751

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGTCTGATTCCACTCTCTCCGACCTCCAAATCCTCTTCAACGCCAATGACCCCGACCCCATGGACTGCTTCTCAGACGAGCTCGCTGCCAATTCCCTCTCCCTCTTCAACCTAGTTCGCTCAATCGCCGCAGCCATGGATTCCGGCTCGGCACATTTCACCCTCTCCGCCCCATCGCATCAGCCGCCCTCATTCTCCACTCTTGTCCTCTTCTCCTTCATCACAATCTCTTCATCCTCCTCCACATCATCTACAATGGCCACCATACCTGATTACTTCATGACGAACATCTCGAGCTCAGAGTTTCTTCATCAGGCTGCATTGTTGCTGAGCACGACCTGCCTGCTCCTCCACCTACACACCGAGCACCGTCACCAGCCCAATGCAGCTCGGACCTCTGACCCAGACCTGTCATCGTCGTTCAATCTCGCCACTTTGCATTTTCCGGAAGGCTGCGACGGAGAGGAATATCGCTCATCTGATGTTTTTGGGGGACAGAAGATTCATGCTCTTTCGATCAAAGCAGTGAGCTTTTTCAATGTGTTTGTTGGGAGTTCTTTACTTAATATTACTGCAAAATGGGTCTTGTGCGGAATGCATGCATGTAAGGTGTTTGATAAAATGCCTGAGAGGAATTCGGTTTCGTGGGATACTGTGATTTCTGGGTATGCAATGCAACGCCTAGCTGGAGATGCGTTGGAGCTTCTCAAGTTGATGCGCAAAGGTGAGGAGAGTGAGGGAGAGAATGAGTTTATTTTGAGTAGTGTTGTGAGTGCCTTGGTTGTTCTTAAGTTTGTTGATATGGGGAAGCAAGACTTGAGGCGAGGTAAGAGGAGAACGACCTTGGAGAGCACCGGCAAGGCCAAGATGTTGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

293

Amino Acids

31.92

Weight (kDa)

5.65

Isoelectric Point (pI)

48.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010619)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0095201 RchiOBHm_Chr6g0285881
rosa_laevigata	RLG00000000751 RLG00000002295 RLG00000010237 RLG00000025502
rosa_multiflora	Rmu_sc0002129.1_g000014
rosa_roxburghii	Rroxscaffold_1G00028370 Rroxscaffold_5G00349650
rosa_rugosa	Rorug02G0529200
rosa_samantha	Rh1DG087100 Rh2AG140000 Rh2BG143400 Rh2DG097800 Rh3CG363800 Rh3DG316300 Rh4AG097200 Rh4CG106500 Rh6CG292100 Rh6DG284200 Rh7CG172400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	719
Acc36I	ACCTGC	1 cut(s)	347
AccIII	TCCGGA	1 cut(s)	445
AciI	CCGC	4 cut(s)	129, 168, 185, 591
AcoI	YGGCCR	1 cut(s)	258
AcsI	RAATTY	1 cut(s)	634
AflII	CTTAAG	1 cut(s)	788
AgsI	TTSAA	4 cut(s)	40, 109, 424, 538
AluBI	AGCT	6 cut(s)	82, 297, 389, 531, 686, 703
AluI	AGCT	6 cut(s)	82, 297, 389, 531, 686, 703
Alw21I	GWGCWC	5 cut(s)	84, 299, 335, 369, 854
Ama87I	CYCGRG	1 cut(s)	292
Aor13HI	TCCGGA	1 cut(s)	445
AoxI	GGCC	2 cut(s)	258, 861
ApeKI	GCWGC	5 cut(s)	86, 131, 317, 386, 453
ApoI	RAATTY	1 cut(s)	634
AspLEI	GCGC	1 cut(s)	720
AspS9I	GGNCC	1 cut(s)	393
AsuHPI	GGTGA	3 cut(s)	151, 365, 737
AvaI	CYCGRG	1 cut(s)	292
AvaII	GGWCC	1 cut(s)	393
BalI	TGGCCA	1 cut(s)	260
BanII	GRGCYC	2 cut(s)	84, 299
Bbv12I	GWGCWC	5 cut(s)	84, 299, 335, 369, 854
BbvI	GCAGC	5 cut(s)	73, 143, 304, 398, 440
BccI	CCATC	1 cut(s)	181
BcgI	CGANNNNNNTGC	4 cut(s)	68, 102, 325, 359
BciVI	GTATCC	1 cut(s)	643
BfaI	CTAG	2 cut(s)	113, 683
BfrI	CTTAAG	1 cut(s)	788
BfuAI	ACCTGC	1 cut(s)	347
BfuI	GTATCC	1 cut(s)	643
BisI	GCNGC	7 cut(s)	87, 129, 132, 185, 318, 387, 454
BlpI	GCTNAGC	1 cut(s)	329
BlsI	GCNGC	7 cut(s)	88, 130, 133, 186, 319, 388, 455
Bme18I	GGWCC	1 cut(s)	393
BmeT110I	CYCGRG	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	393
BmsI	GCATC	3 cut(s)	187, 682, 705
BpmI	CTGGAG	1 cut(s)	708
Bpu1102I	GCTNAGC	1 cut(s)	329
BpuEI	CTTGAG	2 cut(s)	692, 838
BsaBI	GATNNNNATC	1 cut(s)	872
BsaJI	CCNNGG	4 cut(s)	60, 135, 777, 843
BsaWI	WCCGGW	1 cut(s)	445
Bse118I	RCCGGY	1 cut(s)	854
Bse3DI	GCAATG	1 cut(s)	678
Bse8I	GATNNNNATC	1 cut(s)	872
BseAI	TCCGGA	1 cut(s)	445
BseDI	CCNNGG	4 cut(s)	60, 135, 777, 843
BseGI	GGATG	1 cut(s)	233
BseJI	GATNNNNATC	1 cut(s)	872
BseMI	GCAATG	1 cut(s)	678
BseMII	CTCAG	4 cut(s)	87, 312, 320, 618
BseRI	GAGGAG	4 cut(s)	229, 338, 743, 847
BseXI	GCAGC	5 cut(s)	73, 143, 304, 398, 440
BshFI	GGCC	2 cut(s)	260, 863
BsiHKAI	GWGCWC	5 cut(s)	84, 299, 335, 369, 854
BsiHKCI	CYCGRG	1 cut(s)	292
BsiSI	CCGG	3 cut(s)	144, 446, 855
BslFI	GGGAC	1 cut(s)	507
BsmFI	GGGAC	1 cut(s)	507
BsmI	GAATGC	1 cut(s)	600
BsnI	GGCC	2 cut(s)	260, 863
BsoBI	CYCGRG	1 cut(s)	292
Bsp1286I	GDGCHC	5 cut(s)	84, 299, 335, 369, 854
Bsp13I	TCCGGA	1 cut(s)	445
Bsp143I	GATC	2 cut(s)	516, 873
Bsp1720I	GCTNAGC	1 cut(s)	329
Bsp19I	CCATGG	2 cut(s)	60, 135
BspACI	CCGC	4 cut(s)	129, 168, 185, 591
BspANI	GGCC	2 cut(s)	260, 863
BspCNI	CTCAG	4 cut(s)	86, 311, 321, 619
BspEI	TCCGGA	1 cut(s)	445
BspHI	TCATGA	1 cut(s)	279
BspMI	ACCTGC	1 cut(s)	347
BspTI	CTTAAG	1 cut(s)	788
BsrDI	GCAATG	1 cut(s)	678
BsrFI	RCCGGY	1 cut(s)	854
BssAI	RCCGGY	1 cut(s)	854
BssECI	CCNNGG	4 cut(s)	60, 135, 777, 843
BssMI	GATC	2 cut(s)	516, 873
BssT1I	CCWWGG	4 cut(s)	60, 135, 777, 843
Bst4CI	ACNGT	2 cut(s)	371, 655
Bst6I	CTCTTC	4 cut(s)	41, 110, 215, 235
BstAFI	CTTAAG	1 cut(s)	788
BstAPI	GCANNNNNTGC	1 cut(s)	339
BstC8I	GCNNGC	3 cut(s)	84, 344, 600
BstDEI	CTNAG	4 cut(s)	73, 298, 329, 627
BstDSI	CCRYGG	2 cut(s)	60, 135
BstF5I	GGATG	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	720
BstKTI	GATC	2 cut(s)	519, 876
BstMBI	GATC	2 cut(s)	516, 873
BstMWI	GCNNNNNNNGC	3 cut(s)	184, 339, 692
BstNSI	RCATGY	2 cut(s)	602, 606
BstV1I	GCAGC	5 cut(s)	73, 143, 304, 398, 440
BsuI	GTATCC	1 cut(s)	643
BsuRI	GGCC	2 cut(s)	260, 863
BtgI	CCRYGG	2 cut(s)	60, 135
BtgZI	GCGATG	1 cut(s)	159
BtsCI	GGATG	1 cut(s)	233
BtsI	GCAGTG	1 cut(s)	531
BtsIMutI	CAGTG	1 cut(s)	531
BveI	ACCTGC	1 cut(s)	347
Cac8I	GCNNGC	3 cut(s)	84, 344, 600
CciI	TCATGA	1 cut(s)	279
CfoI	GCGC	1 cut(s)	720
Cfr10I	RCCGGY	1 cut(s)	854
Cfr13I	GGNCC	1 cut(s)	393
CviAII	CATG	6 cut(s)	61, 136, 280, 506, 599, 603
DdeI	CTNAG	4 cut(s)	73, 298, 329, 627
DpnI	GATC	2 cut(s)	518, 875
DpnII	GATC	2 cut(s)	516, 873
EaeI	YGGCCR	1 cut(s)	258
Eam1104I	CTCTTC	4 cut(s)	41, 110, 215, 235
EarI	CTCTTC	4 cut(s)	41, 110, 215, 235
EciI	GGCGGA	1 cut(s)	157
Ecl136II	GAGCTC	2 cut(s)	82, 297
Eco130I	CCWWGG	4 cut(s)	60, 135, 777, 843
Eco24I	GRGCYC	2 cut(s)	84, 299
Eco47I	GGWCC	1 cut(s)	393
Eco53kI	GAGCTC	2 cut(s)	82, 297
Eco88I	CYCGRG	1 cut(s)	292
EcoICRI	GAGCTC	2 cut(s)	82, 297
EcoRI	GAATTC	1 cut(s)	634
EcoT14I	CCWWGG	4 cut(s)	60, 135, 777, 843
EcoT22I	ATGCAT	2 cut(s)	600, 604
EcoT38I	GRGCYC	2 cut(s)	84, 299
ErhI	CCWWGG	4 cut(s)	60, 135, 777, 843
FaeI	CATG	6 cut(s)	64, 139, 283, 509, 602, 606
FaiI	YATR	9 cut(s)	62, 137, 266, 281, 507, 600, 604, 669, 803
FalI	AAGNNNNNCTT	2 cut(s)	800, 832
FaqI	GGGAC	1 cut(s)	507
FatI	CATG	6 cut(s)	60, 135, 279, 505, 598, 602
Fnu4HI	GCNGC	7 cut(s)	87, 129, 132, 185, 318, 387, 454
FokI	GGATG	1 cut(s)	220
FriOI	GRGCYC	2 cut(s)	84, 299
Fsp4HI	GCNGC	7 cut(s)	87, 129, 132, 185, 318, 387, 454
FspBI	CTAG	2 cut(s)	113, 683
FspI	TGCGCA	1 cut(s)	719
GlaI	GCGC	1 cut(s)	719
GluI	GCNGC	7 cut(s)	87, 129, 132, 185, 318, 387, 454
GsuI	CTGGAG	1 cut(s)	708
HaeIII	GGCC	2 cut(s)	260, 863
HapII	CCGG	3 cut(s)	144, 446, 855
HhaI	GCGC	1 cut(s)	720
Hin1II	CATG	6 cut(s)	64, 139, 283, 509, 602, 606
Hin6I	GCGC	1 cut(s)	718
HinP1I	GCGC	1 cut(s)	718
HinfI	GANTC	3 cut(s)	8, 140, 502
HpaII	CCGG	3 cut(s)	144, 446, 855
HphI	GGTGA	3 cut(s)	151, 365, 737
Hpy188I	TCNGA	8 cut(s)	7, 22, 76, 301, 393, 400, 481, 878
Hpy188III	TCNNGA	3 cut(s)	280, 292, 446
Hpy99I	CGWCG	2 cut(s)	421, 461
HpyAV	CCTTC	2 cut(s)	226, 443
HpyCH4III	ACNGT	2 cut(s)	371, 655
HpyCH4V	TGCA	8 cut(s)	320, 386, 439, 575, 598, 602, 671, 676
HpyF10VI	GCNNNNNNNGC	3 cut(s)	184, 339, 692
HpyF3I	CTNAG	4 cut(s)	73, 298, 329, 627
Hsp92II	CATG	6 cut(s)	64, 139, 283, 509, 602, 606
HspAI	GCGC	1 cut(s)	718
Kpn2I	TCCGGA	1 cut(s)	445
Kzo9I	GATC	2 cut(s)	516, 873
LmnI	GCTCC	2 cut(s)	351, 700
Lsp1109I	GCAGC	5 cut(s)	73, 143, 304, 398, 440
LweI	GCATC	3 cut(s)	187, 682, 705
MaeI	CTAG	2 cut(s)	113, 683
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	2 cut(s)	518, 875
MboI	GATC	2 cut(s)	516, 873
MboII	GAAGA	6 cut(s)	28, 97, 202, 222, 299, 511
MhlI	GDGCHC	5 cut(s)	84, 299, 335, 369, 854
MlsI	TGGCCA	1 cut(s)	260
MluCI	AATT	2 cut(s)	91, 634
MluNI	TGGCCA	1 cut(s)	260
MmeI	TCCRAC	2 cut(s)	45, 678
Mox20I	TGGCCA	1 cut(s)	260
Mph1103I	ATGCAT	2 cut(s)	600, 604
MroI	TCCGGA	1 cut(s)	445
MscI	TGGCCA	1 cut(s)	260
MseI	TTAA	2 cut(s)	564, 789
Msp20I	TGGCCA	1 cut(s)	260
MspCI	CTTAAG	1 cut(s)	788
MspI	CCGG	3 cut(s)	144, 446, 855
Mva1269I	GAATGC	1 cut(s)	600
MwoI	GCNNNNNNNGC	3 cut(s)	184, 339, 692
NcoI	CCATGG	2 cut(s)	60, 135
NdeII	GATC	2 cut(s)	516, 873
NlaIII	CATG	6 cut(s)	64, 139, 283, 509, 602, 606
NmeAIII	GCCGAG	1 cut(s)	128
NmuCI	GTSAC	1 cut(s)	371
NsbI	TGCGCA	1 cut(s)	719
NsiI	ATGCAT	2 cut(s)	600, 604
NspI	RCATGY	2 cut(s)	602, 606
PaeI	GCATGC	1 cut(s)	602
PaeR7I	CTCGAG	1 cut(s)	292
PagI	TCATGA	1 cut(s)	279
PcsI	WCGNNNNNNNCGW	1 cut(s)	290
PctI	GAATGC	1 cut(s)	600
PfeI	GAWTC	3 cut(s)	8, 140, 502
PkrI	GCNGC	7 cut(s)	88, 130, 133, 186, 319, 388, 455
Psp124BI	GAGCTC	2 cut(s)	84, 299
PspPI	GGNCC	1 cut(s)	393
SacI	GAGCTC	2 cut(s)	84, 299
SaqAI	TTAA	2 cut(s)	564, 789
SatI	GCNGC	7 cut(s)	87, 129, 132, 185, 318, 387, 454
Sau3AI	GATC	2 cut(s)	516, 873
Sau96I	GGNCC	1 cut(s)	393
SduI	GDGCHC	5 cut(s)	84, 299, 335, 369, 854
SfaNI	GCATC	3 cut(s)	187, 682, 705
Sfr274I	CTCGAG	1 cut(s)	292
SinI	GGWCC	1 cut(s)	393
SlaI	CTCGAG	1 cut(s)	292
SmlI	CTYRAG	4 cut(s)	292, 707, 788, 817
SmoI	CTYRAG	4 cut(s)	292, 707, 788, 817
SphI	GCATGC	1 cut(s)	602
Sse9I	AATT	2 cut(s)	91, 634
SsiI	CCGC	4 cut(s)	129, 168, 185, 591
SspI	AATATT	1 cut(s)	568
SspMI	CTAG	2 cut(s)	113, 683
SstI	GAGCTC	2 cut(s)	84, 299
StyI	CCWWGG	4 cut(s)	60, 135, 777, 843
TaaI	ACNGT	2 cut(s)	371, 655
TaqI	TCGA	2 cut(s)	293, 515
TasI	AATT	2 cut(s)	91, 634
TauI	GCSGC	2 cut(s)	131, 187
TfiI	GAWTC	3 cut(s)	8, 140, 502
Tru1I	TTAA	2 cut(s)	564, 789
Tru9I	TTAA	2 cut(s)	564, 789
TscAI	CASTG	1 cut(s)	531
TseFI	GTSAC	1 cut(s)	371
TseI	GCWGC	5 cut(s)	86, 131, 317, 386, 453
Tsp45I	GTSAC	1 cut(s)	371
TspDTI	ATGAA	5 cut(s)	208, 222, 268, 299, 494
TspGWI	ACGGA	1 cut(s)	474
TspRI	CASTG	1 cut(s)	531
Vha464I	CTTAAG	1 cut(s)	788
VpaK11BI	GGWCC	1 cut(s)	393
XapI	RAATTY	1 cut(s)	634
XceI	RCATGY	2 cut(s)	602, 606
XhoI	CTCGAG	1 cut(s)	292
XspI	CTAG	2 cut(s)	113, 683
Zsp2I	ATGCAT	2 cut(s)	600, 604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.