Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0010619

Physical Location & Seq

Genomic Coordinates Reverse (-)

64572812 .. 64573519

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010237

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGAACCGCTTTTCCAACGAGCTCGCAGCCAAGTCCCTTTCCCTCTCTAATCTGGTCTGCCCCATCGCCCGACCATGGATTCCGACTCGGCCCATTTCACCCTCTCCGCCTCCAAGCTTTACCTCTCTCTCCTCCTCTCCCCCAATTCCCCAGTCTGCACTCTCTTTACTCCTATGGCGTTTTTCTCTCTCCTCAATCGATTCGCCGGTTGCTGAAGCGGAAGGGGAGGGGCAAAGCGAGCTTTTTCGATGTATTTTTTGGGAGTTACTTAATATGTACTGCAAAATGGGTCTTGTGGGGGATGCACGTAAGATGTTTGATAGAATACGTGAGAGGAATTCGGTTTCTTGGGCTACTATGATTTCTGGGTATGCAATGCAACGCCTGGCTGGAGATGCGTTGGAGCTTTTTGGGTTGATGCATAGAGGTGAGGAGAGTGAGGGAGAGAATGAGTTTATTTTGACTAGTGTTGTGAGTGCCTTGGCTGTTCCTGAGTTTGTTGATAACTTGATACCGGAAAGCAAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

177

Amino Acids

19.49

Weight (kDa)

4.96

Isoelectric Point (pI)

57.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010619)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0095201 RchiOBHm_Chr6g0285881
rosa_laevigata	RLG00000000751 RLG00000002295 RLG00000010237 RLG00000025502
rosa_multiflora	Rmu_sc0002129.1_g000014
rosa_roxburghii	Rroxscaffold_1G00028370 Rroxscaffold_5G00349650
rosa_rugosa	Rorug02G0529200
rosa_samantha	Rh1DG087100 Rh2AG140000 Rh2BG143400 Rh2DG097800 Rh3CG363800 Rh3DG316300 Rh4AG097200 Rh4CG106500 Rh6CG292100 Rh6DG284200 Rh7CG172400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	7, 107, 218
AcsI	RAATTY	1 cut(s)	337
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	75
AhlI	ACTAGT	1 cut(s)	464
AjnI	CCWGG	1 cut(s)	384
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	4 cut(s)	22, 117, 241, 406
AluI	AGCT	4 cut(s)	22, 117, 241, 406
Alw21I	GWGCWC	1 cut(s)	24
AoxI	GGCC	1 cut(s)	89
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	337
AspS9I	GGNCC	1 cut(s)	90
AsuHPI	GGTGA	2 cut(s)	90, 440
BanII	GRGCYC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	1 cut(s)	71
BciT130I	CCWGG	1 cut(s)	386
BcuI	ACTAGT	1 cut(s)	464
BfaI	CTAG	1 cut(s)	465
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
Bme1390I	CCNGG	1 cut(s)	386
BmgT120I	GGNCC	1 cut(s)	90
BmrFI	CCNGG	1 cut(s)	386
BmrI	ACTGGG	1 cut(s)	145
BmsI	GCATC	3 cut(s)	292, 385, 408
BmuI	ACTGGG	1 cut(s)	145
BpmI	CTGGAG	1 cut(s)	411
Bsa29I	ATCGAT	1 cut(s)	198
BsaAI	YACGTR	2 cut(s)	308, 329
BsaJI	CCNNGG	2 cut(s)	74, 480
BsaWI	WCCGGW	1 cut(s)	514
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse118I	RCCGGY	1 cut(s)	205
Bse1I	ACTGG	1 cut(s)	151
Bse3DI	GCAATG	1 cut(s)	381
BseBI	CCWGG	1 cut(s)	386
BseCI	ATCGAT	1 cut(s)	198
BseDI	CCNNGG	2 cut(s)	74, 480
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	1 cut(s)	483
BseNI	ACTGG	1 cut(s)	151
BseRI	GAGGAG	4 cut(s)	121, 124, 181, 446
BseXI	GCAGC	1 cut(s)	38
BsgI	GTGCAG	1 cut(s)	141
BshFI	GGCC	1 cut(s)	91
BshVI	ATCGAT	1 cut(s)	198
BsiHKAI	GWGCWC	1 cut(s)	24
BsiSI	CCGG	2 cut(s)	206, 515
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmFI	GGGAC	1 cut(s)	19
BsnI	GGCC	1 cut(s)	91
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp19I	CCATGG	1 cut(s)	74
BspACI	CCGC	3 cut(s)	7, 107, 218
BspANI	GGCC	1 cut(s)	91
BspCNI	CTCAG	1 cut(s)	484
BspDI	ATCGAT	1 cut(s)	198
BsrDI	GCAATG	1 cut(s)	381
BsrFI	RCCGGY	1 cut(s)	205
BsrI	ACTGG	1 cut(s)	151
BssAI	RCCGGY	1 cut(s)	205
BssECI	CCNNGG	2 cut(s)	74, 480
BssT1I	CCWWGG	2 cut(s)	74, 480
Bst2UI	CCWGG	1 cut(s)	386
BstBAI	YACGTR	2 cut(s)	308, 329
BstC8I	GCNNGC	2 cut(s)	24, 239
BstDEI	CTNAG	1 cut(s)	492
BstDSI	CCRYGG	1 cut(s)	74
BstF5I	GGATG	1 cut(s)	307
BstMWI	GCNNNNNNNGC	2 cut(s)	238, 395
BstNI	CCWGG	1 cut(s)	386
BstSCI	CCNGG	1 cut(s)	384
BstV1I	GCAGC	1 cut(s)	38
Bsu15I	ATCGAT	1 cut(s)	198
BsuRI	GGCC	1 cut(s)	91
BsuTUI	ATCGAT	1 cut(s)	198
BtgI	CCRYGG	1 cut(s)	74
BtgZI	GCGATG	1 cut(s)	49
BtsCI	GGATG	1 cut(s)	307
Cac8I	GCNNGC	2 cut(s)	24, 239
Cfr10I	RCCGGY	1 cut(s)	205
Cfr13I	GGNCC	1 cut(s)	90
ClaI	ATCGAT	1 cut(s)	198
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	1 cut(s)	75
CviJI	RGCY	9 cut(s)	22, 29, 91, 117, 241, 353, 389, 406, 485
CviKI_1	RGCY	9 cut(s)	22, 29, 91, 117, 241, 353, 389, 406, 485
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	1 cut(s)	492
EciI	GGCGGA	1 cut(s)	96
Ecl136II	GAGCTC	1 cut(s)	22
Eco130I	CCWWGG	2 cut(s)	74, 480
Eco24I	GRGCYC	1 cut(s)	24
Eco53kI	GAGCTC	1 cut(s)	22
Eco57I	CTGAAG	1 cut(s)	234
EcoICRI	GAGCTC	1 cut(s)	22
EcoRI	GAATTC	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	384
EcoT14I	CCWWGG	2 cut(s)	74, 480
EcoT22I	ATGCAT	1 cut(s)	423
EcoT38I	GRGCYC	1 cut(s)	24
ErhI	CCWWGG	2 cut(s)	74, 480
FaeI	CATG	1 cut(s)	78
FaiI	YATR	6 cut(s)	76, 175, 275, 359, 372, 423
FalI	AAGNNNNNCTT	1 cut(s)	511
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	1 cut(s)	74
Fnu4HI	GCNGC	1 cut(s)	27
FokI	GGATG	1 cut(s)	314
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	1 cut(s)	27
FspBI	CTAG	1 cut(s)	465
GluI	GCNGC	1 cut(s)	27
GsuI	CTGGAG	1 cut(s)	411
HaeIII	GGCC	1 cut(s)	91
HapII	CCGG	2 cut(s)	206, 515
Hin1II	CATG	1 cut(s)	78
HindIII	AAGCTT	1 cut(s)	115
HinfI	GANTC	3 cut(s)	79, 85, 200
HpaII	CCGG	2 cut(s)	206, 515
HphI	GGTGA	2 cut(s)	90, 440
Hpy188I	TCNGA	1 cut(s)	84
Hpy188III	TCNNGA	1 cut(s)	491
HpyAV	CCTTC	1 cut(s)	215
HpyCH4IV	ACGT	2 cut(s)	307, 328
HpyCH4V	TGCA	6 cut(s)	158, 282, 305, 374, 379, 421
HpyF10VI	GCNNNNNNNGC	2 cut(s)	238, 395
HpyF3I	CTNAG	1 cut(s)	492
HpySE526I	ACGT	2 cut(s)	307, 328
Hsp92II	CATG	1 cut(s)	78
LmnI	GCTCC	1 cut(s)	403
LpnPI	CCDG	8 cut(s)	38, 164, 219, 351, 371, 375, 398, 504
Lsp1109I	GCAGC	1 cut(s)	38
LweI	GCATC	3 cut(s)	292, 385, 408
MaeI	CTAG	1 cut(s)	465
MaeII	ACGT	2 cut(s)	307, 328
MaeIII	GTNAC	1 cut(s)	264
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	2 cut(s)	144, 337
MlyI	GAGTC	1 cut(s)	79
MmeI	TCCRAC	3 cut(s)	39, 107, 381
Mph1103I	ATGCAT	1 cut(s)	423
MseI	TTAA	1 cut(s)	270
MslI	CAYNNNNRTG	1 cut(s)	426
MspI	CCGG	2 cut(s)	206, 515
MspR9I	CCNGG	1 cut(s)	386
MvaI	CCWGG	1 cut(s)	386
MwoI	GCNNNNNNNGC	2 cut(s)	238, 395
NcoI	CCATGG	1 cut(s)	74
NlaIII	CATG	1 cut(s)	78
NmeAIII	GCCGAG	1 cut(s)	67
NsiI	ATGCAT	1 cut(s)	423
PfeI	GAWTC	2 cut(s)	79, 200
PkrI	GCNGC	1 cut(s)	28
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
Ppu21I	YACGTR	2 cut(s)	308, 329
Psp124BI	GAGCTC	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	384
PspGI	CCWGG	1 cut(s)	384
PspPI	GGNCC	1 cut(s)	90
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
RseI	CAYNNNNRTG	1 cut(s)	426
SacI	GAGCTC	1 cut(s)	24
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	1 cut(s)	27
Sau96I	GGNCC	1 cut(s)	90
SchI	GAGTC	1 cut(s)	79
ScrFI	CCNGG	1 cut(s)	386
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	8 cut(s)	24, 119, 125, 243, 310, 331, 408, 430
SfaNI	GCATC	3 cut(s)	292, 385, 408
SmiMI	CAYNNNNRTG	1 cut(s)	426
SpeI	ACTAGT	1 cut(s)	464
Sse9I	AATT	2 cut(s)	144, 337
SsiI	CCGC	3 cut(s)	7, 107, 218
SspMI	CTAG	1 cut(s)	465
SstI	GAGCTC	1 cut(s)	24
StyD4I	CCNGG	1 cut(s)	384
StyI	CCWWGG	2 cut(s)	74, 480
TaiI	ACGT	2 cut(s)	310, 331
TaqI	TCGA	2 cut(s)	198, 247
TasI	AATT	2 cut(s)	144, 337
TatI	WGTACW	1 cut(s)	276
TfiI	GAWTC	2 cut(s)	79, 200
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TseI	GCWGC	1 cut(s)	26
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	337
XspI	CTAG	1 cut(s)	465
Zsp2I	ATGCAT	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.