Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0010619

Physical Location & Seq

Genomic Coordinates Forward (+)

22736103 .. 22737000

Gene Structure 898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00349650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGATCGCCGCCGCCATGGATTCCGGCGTATCAGTGCCCTCATTCTCCACTCTTGTCCTCTTCTTCCTCTTCTCCTTCATCTCAATCTCTCCATCCTCCTCCTCATCATCTACAATGGCCACCATACCGATTGCTTCACAACGAACATCTCGAGCTCGAGTCTATTCATCGGGTCGCACCGCCGCCGAGCCCGACCTCGCTTGCTCCTCCACTCGCACATCGAGCACGGTCAAGACCTCGAAGCAGCTCGGACCTCCGACCCGGACCTGTCCTCAAGATTCATGCTCTTGGGATCAAAGCAGCGAGCTTTTTCGATGTGTTTGTTGGGAGTTCTTTCTTGATATGTACTGCAAAATGGGTCTTGTGGGGGATGCACGTAAGGTGTTTGATAGAATTCCTGAGAGGAATTCGGTTTCGTGGGCTACTATGATTTACGGGTATGCAATGCAACGCCTGGCTGGAGAAGCGTTGGAGCTTCTCGGGTTGATGCGTAGAGGTGAGGAGAGTGAGGGAGAGAATGTTATTTTGACTAGTGTTGTGAGTGCCTTGGCTGTTCCCGAGTTTGTTGATACGGGGAAGCAAGACTTAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

197

Amino Acids

21.51

Weight (kDa)

5.57

Isoelectric Point (pI)

52.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010619)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0095201 RchiOBHm_Chr6g0285881
rosa_laevigata	RLG00000000751 RLG00000002295 RLG00000010237 RLG00000025502
rosa_multiflora	Rmu_sc0002129.1_g000014
rosa_roxburghii	Rroxscaffold_1G00028370 Rroxscaffold_5G00349650
rosa_rugosa	Rorug02G0529200
rosa_samantha	Rh1DG087100 Rh2AG140000 Rh2BG143400 Rh2DG097800 Rh3CG363800 Rh3DG316300 Rh4AG097200 Rh4CG106500 Rh6CG292100 Rh6DG284200 Rh7CG172400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	9, 12, 180, 183
AclWI	GGATC	1 cut(s)	300
AcoI	YGGCCR	1 cut(s)	117
AcsI	RAATTY	2 cut(s)	393, 406
AfaI	GTAC	1 cut(s)	347
AflII	CTTAAG	1 cut(s)	586
AhlI	ACTAGT	1 cut(s)	530
AjnI	CCWGG	1 cut(s)	453
AluBI	AGCT	4 cut(s)	155, 247, 307, 475
AluI	AGCT	4 cut(s)	155, 247, 307, 475
Alw21I	GWGCWC	2 cut(s)	157, 227
AlwI	GGATC	1 cut(s)	300
Ama87I	CYCGRG	4 cut(s)	150, 156, 479, 557
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	2 cut(s)	244, 300
ApoI	RAATTY	2 cut(s)	393, 406
AspS9I	GGNCC	2 cut(s)	251, 264
AsuC2I	CCSGG	1 cut(s)	262
AsuHPI	GGTGA	1 cut(s)	509
AvaI	CYCGRG	4 cut(s)	150, 156, 479, 557
AvaII	GGWCC	2 cut(s)	251, 264
BaeGI	GKGCMC	1 cut(s)	39
BalI	TGGCCA	1 cut(s)	119
BanII	GRGCYC	2 cut(s)	157, 192
Bbv12I	GWGCWC	2 cut(s)	157, 227
BbvI	GCAGC	2 cut(s)	256, 312
BccI	CCATC	1 cut(s)	100
BciT130I	CCWGG	1 cut(s)	455
BcnI	CCSGG	1 cut(s)	262
BcuI	ACTAGT	1 cut(s)	530
BfaI	CTAG	1 cut(s)	531
BfrI	CTTAAG	1 cut(s)	586
BisI	GCNGC	5 cut(s)	9, 12, 183, 245, 301
BlsI	GCNGC	5 cut(s)	10, 13, 184, 246, 302
Bme1390I	CCNGG	2 cut(s)	262, 455
Bme18I	GGWCC	2 cut(s)	251, 264
BmeT110I	CYCGRG	4 cut(s)	150, 156, 479, 557
BmgT120I	GGNCC	2 cut(s)	251, 264
BmrFI	CCNGG	2 cut(s)	262, 455
BmsI	GCATC	2 cut(s)	361, 477
BpmI	CTGGAG	1 cut(s)	480
BpuEI	CTTGAG	1 cut(s)	258
BpuMI	CCSGG	1 cut(s)	262
BsaAI	YACGTR	1 cut(s)	377
BsaJI	CCNNGG	2 cut(s)	15, 546
BsaXI	ACNNNNNCTCC	2 cut(s)	504, 534
Bse3DI	GCAATG	1 cut(s)	450
BseBI	CCWGG	1 cut(s)	455
BseDI	CCNNGG	2 cut(s)	15, 546
BseGI	GGATG	2 cut(s)	92, 376
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	1 cut(s)	390
BseRI	GAGGAG	4 cut(s)	88, 91, 196, 515
BseSI	GKGCMC	1 cut(s)	39
BseXI	GCAGC	2 cut(s)	256, 312
BshFI	GGCC	1 cut(s)	119
BsiHKAI	GWGCWC	2 cut(s)	157, 227
BsiHKCI	CYCGRG	4 cut(s)	150, 156, 479, 557
BsiSI	CCGG	2 cut(s)	24, 262
BsnI	GGCC	1 cut(s)	119
BsoBI	CYCGRG	4 cut(s)	150, 156, 479, 557
Bsp1286I	GDGCHC	4 cut(s)	39, 157, 192, 227
Bsp143I	GATC	2 cut(s)	3, 292
Bsp19I	CCATGG	1 cut(s)	15
BspACI	CCGC	4 cut(s)	9, 12, 180, 183
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	1 cut(s)	391
BspPI	GGATC	1 cut(s)	300
BspTI	CTTAAG	1 cut(s)	586
BsrDI	GCAATG	1 cut(s)	450
BssECI	CCNNGG	2 cut(s)	15, 546
BssMI	GATC	2 cut(s)	3, 292
BssT1I	CCWWGG	2 cut(s)	15, 546
Bst2UI	CCWGG	1 cut(s)	455
Bst4CI	ACNGT	1 cut(s)	229
Bst6I	CTCTTC	2 cut(s)	65, 74
BstAFI	CTTAAG	1 cut(s)	586
BstBAI	YACGTR	1 cut(s)	377
BstC8I	GCNNGC	2 cut(s)	202, 305
BstDEI	CTNAG	1 cut(s)	399
BstDSI	CCRYGG	1 cut(s)	15
BstF5I	GGATG	2 cut(s)	92, 376
BstKTI	GATC	2 cut(s)	6, 295
BstMBI	GATC	2 cut(s)	3, 292
BstMWI	GCNNNNNNNGC	2 cut(s)	222, 464
BstNI	CCWGG	1 cut(s)	455
BstSCI	CCNGG	2 cut(s)	260, 453
BstSLI	GKGCMC	1 cut(s)	39
BstV1I	GCAGC	2 cut(s)	256, 312
BsuRI	GGCC	1 cut(s)	119
BtgI	CCRYGG	1 cut(s)	15
BtsCI	GGATG	2 cut(s)	92, 376
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	2 cut(s)	202, 305
Cfr13I	GGNCC	2 cut(s)	251, 264
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	2 cut(s)	16, 282
CviJI	RGCY	9 cut(s)	119, 155, 190, 247, 307, 422, 458, 475, 551
CviKI_1	RGCY	9 cut(s)	119, 155, 190, 247, 307, 422, 458, 475, 551
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	1 cut(s)	399
DpnI	GATC	2 cut(s)	5, 294
DpnII	GATC	2 cut(s)	3, 292
EaeI	YGGCCR	1 cut(s)	117
Eam1104I	CTCTTC	2 cut(s)	65, 74
EarI	CTCTTC	2 cut(s)	65, 74
Ecl136II	GAGCTC	1 cut(s)	155
Eco130I	CCWWGG	2 cut(s)	15, 546
Eco24I	GRGCYC	2 cut(s)	157, 192
Eco47I	GGWCC	2 cut(s)	251, 264
Eco53kI	GAGCTC	1 cut(s)	155
Eco88I	CYCGRG	4 cut(s)	150, 156, 479, 557
EcoICRI	GAGCTC	1 cut(s)	155
EcoRI	GAATTC	2 cut(s)	393, 406
EcoRII	CCWGG	1 cut(s)	453
EcoT14I	CCWWGG	2 cut(s)	15, 546
EcoT38I	GRGCYC	2 cut(s)	157, 192
ErhI	CCWWGG	2 cut(s)	15, 546
FaeI	CATG	2 cut(s)	19, 285
FaiI	YATR	6 cut(s)	17, 125, 283, 344, 428, 441
FalI	AAGNNNNNCTT	1 cut(s)	569
FatI	CATG	2 cut(s)	15, 281
Fnu4HI	GCNGC	5 cut(s)	9, 12, 183, 245, 301
FokI	GGATG	2 cut(s)	79, 383
FriOI	GRGCYC	2 cut(s)	157, 192
Fsp4HI	GCNGC	5 cut(s)	9, 12, 183, 245, 301
FspBI	CTAG	1 cut(s)	531
GluI	GCNGC	5 cut(s)	9, 12, 183, 245, 301
GsuI	CTGGAG	1 cut(s)	480
HaeIII	GGCC	1 cut(s)	119
HapII	CCGG	2 cut(s)	24, 262
Hin1II	CATG	2 cut(s)	19, 285
HinfI	GANTC	3 cut(s)	20, 159, 278
HpaII	CCGG	2 cut(s)	24, 262
HphI	GGTGA	1 cut(s)	509
Hpy188I	TCNGA	2 cut(s)	251, 258
Hpy188III	TCNNGA	6 cut(s)	150, 232, 275, 338, 398, 557
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4IV	ACGT	1 cut(s)	376
HpyCH4V	TGCA	4 cut(s)	351, 374, 443, 448
HpyF10VI	GCNNNNNNNGC	2 cut(s)	222, 464
HpyF3I	CTNAG	1 cut(s)	399
HpySE526I	ACGT	1 cut(s)	376
Hsp92II	CATG	2 cut(s)	19, 285
Kzo9I	GATC	2 cut(s)	3, 292
LmnI	GCTCC	2 cut(s)	209, 472
LpnPI	CCDG	7 cut(s)	37, 275, 280, 411, 440, 444, 467
Lsp1109I	GCAGC	2 cut(s)	256, 312
LweI	GCATC	2 cut(s)	361, 477
MaeI	CTAG	1 cut(s)	531
MaeII	ACGT	1 cut(s)	376
MalI	GATC	2 cut(s)	5, 294
MboI	GATC	2 cut(s)	3, 292
MboII	GAAGA	3 cut(s)	52, 55, 61
MhlI	GDGCHC	4 cut(s)	39, 157, 192, 227
MlsI	TGGCCA	1 cut(s)	119
MluCI	AATT	2 cut(s)	393, 406
MluNI	TGGCCA	1 cut(s)	119
MlyI	GAGTC	1 cut(s)	168
MmeI	TCCRAC	2 cut(s)	281, 450
Mox20I	TGGCCA	1 cut(s)	119
MscI	TGGCCA	1 cut(s)	119
MseI	TTAA	1 cut(s)	587
Msp20I	TGGCCA	1 cut(s)	119
MspCI	CTTAAG	1 cut(s)	586
MspI	CCGG	2 cut(s)	24, 262
MspR9I	CCNGG	2 cut(s)	262, 455
MvaI	CCWGG	1 cut(s)	455
MwoI	GCNNNNNNNGC	2 cut(s)	222, 464
NciI	CCSGG	1 cut(s)	262
NcoI	CCATGG	1 cut(s)	15
NdeII	GATC	2 cut(s)	3, 292
NlaIII	CATG	2 cut(s)	19, 285
NmeAIII	GCCGAG	1 cut(s)	211
PaeR7I	CTCGAG	2 cut(s)	150, 156
PcsI	WCGNNNNNNNCGW	1 cut(s)	148
PfeI	GAWTC	2 cut(s)	20, 278
PkrI	GCNGC	5 cut(s)	10, 13, 184, 246, 302
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
Ppu21I	YACGTR	1 cut(s)	377
Psp124BI	GAGCTC	1 cut(s)	157
Psp6I	CCWGG	1 cut(s)	453
PspGI	CCWGG	1 cut(s)	453
PspPI	GGNCC	2 cut(s)	251, 264
PspXI	VCTCGAGB	1 cut(s)	156
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
SacI	GAGCTC	1 cut(s)	157
SaqAI	TTAA	1 cut(s)	587
SatI	GCNGC	5 cut(s)	9, 12, 183, 245, 301
Sau3AI	GATC	2 cut(s)	3, 292
Sau96I	GGNCC	2 cut(s)	251, 264
SchI	GAGTC	1 cut(s)	168
ScrFI	CCNGG	2 cut(s)	262, 455
SduI	GDGCHC	4 cut(s)	39, 157, 192, 227
SfaNI	GCATC	2 cut(s)	361, 477
Sfr274I	CTCGAG	2 cut(s)	150, 156
SinI	GGWCC	2 cut(s)	251, 264
SlaI	CTCGAG	2 cut(s)	150, 156
SmlI	CTYRAG	4 cut(s)	150, 156, 273, 586
SmoI	CTYRAG	4 cut(s)	150, 156, 273, 586
SpeI	ACTAGT	1 cut(s)	530
Sse9I	AATT	2 cut(s)	393, 406
SsiI	CCGC	4 cut(s)	9, 12, 180, 183
SspMI	CTAG	1 cut(s)	531
SstI	GAGCTC	1 cut(s)	157
StyD4I	CCNGG	2 cut(s)	260, 453
StyI	CCWWGG	2 cut(s)	15, 546
TaaI	ACNGT	1 cut(s)	229
TaiI	ACGT	1 cut(s)	379
TaqI	TCGA	5 cut(s)	151, 157, 221, 239, 313
TasI	AATT	2 cut(s)	393, 406
TatI	WGTACW	1 cut(s)	345
TauI	GCSGC	3 cut(s)	11, 14, 185
TfiI	GAWTC	2 cut(s)	20, 278
Tru1I	TTAA	1 cut(s)	587
Tru9I	TTAA	1 cut(s)	587
TscAI	CASTG	1 cut(s)	39
TseI	GCWGC	2 cut(s)	244, 300
TspDTI	ATGAA	3 cut(s)	67, 156, 270
TspRI	CASTG	1 cut(s)	39
Vha464I	CTTAAG	1 cut(s)	586
VpaK11BI	GGWCC	2 cut(s)	251, 264
XapI	RAATTY	2 cut(s)	393, 406
XhoI	CTCGAG	2 cut(s)	150, 156
XspI	CTAG	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.