Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0010619

Physical Location & Seq

Genomic Coordinates Forward (+)

20698388 .. 20700604

Gene Structure 2217 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG097200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGCCGGAGGAGCCATGACCGATCCAAATGGAGCTACTATGATTTCTGGGTATGCAATACAACGCCTGACTGGAGATGCGCTGGAGCTTCTCGGGTTGATGCGTAGAGGTGAGGAGAGTGAGGGAGAGAATGAGTTTATTTTGACTAGTGTTGTGAGTACCTTGGCTGTTCCTGAGTTTGTTGATATGAGGAAGCAAGACTTGAGACGAGGTAAGAGGAGAATGACCTTGGAGAGCTCCAGCAACGCCAAGGTGTTGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

87

Amino Acids

9.49

Weight (kDa)

5.38

Isoelectric Point (pI)

51.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010619)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0095201 RchiOBHm_Chr6g0285881
rosa_laevigata	RLG00000000751 RLG00000002295 RLG00000010237 RLG00000025502
rosa_multiflora	Rmu_sc0002129.1_g000014
rosa_roxburghii	Rroxscaffold_1G00028370 Rroxscaffold_5G00349650
rosa_rugosa	Rorug02G0529200
rosa_samantha	Rh1DG087100 Rh2AG140000 Rh2BG143400 Rh2DG097800 Rh3CG363800 Rh3DG316300 Rh4AG097200 Rh4CG106500 Rh6CG292100 Rh6DG284200 Rh7CG172400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	17
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	160
AhlI	ACTAGT	1 cut(s)	146
AluBI	AGCT	3 cut(s)	35, 88, 237
AluI	AGCT	3 cut(s)	35, 88, 237
Alw21I	GWGCWC	1 cut(s)	239
Alw26I	GTCTC	1 cut(s)	199
AlwI	GGATC	1 cut(s)	17
Ama87I	CYCGRG	1 cut(s)	92
AoxI	GGCC	1 cut(s)	3
AspLEI	GCGC	1 cut(s)	82
AsuHPI	GGTGA	1 cut(s)	122
AvaI	CYCGRG	1 cut(s)	92
BanII	GRGCYC	1 cut(s)	239
Bbv12I	GWGCWC	1 cut(s)	239
BcoDI	GTCTC	1 cut(s)	199
BcuI	ACTAGT	1 cut(s)	146
BfaI	CTAG	1 cut(s)	147
BmeT110I	CYCGRG	1 cut(s)	92
BmiI	GGNNCC	1 cut(s)	13
BmsI	GCATC	2 cut(s)	67, 90
BpmI	CTGGAG	3 cut(s)	93, 104, 223
BpuEI	CTTGAG	1 cut(s)	223
BsaJI	CCNNGG	3 cut(s)	162, 228, 249
Bse1I	ACTGG	1 cut(s)	76
BseDI	CCNNGG	3 cut(s)	162, 228, 249
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	1 cut(s)	76
BseRI	GAGGAG	3 cut(s)	24, 128, 232
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	239
BsiHKCI	CYCGRG	1 cut(s)	92
BsiSI	CCGG	1 cut(s)	6
BsmAI	GTCTC	1 cut(s)	199
BsmBI	CGTCTC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	239
Bsp143I	GATC	2 cut(s)	22, 258
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	166
BspLI	GGNNCC	1 cut(s)	13
BspPI	GGATC	1 cut(s)	17
BsrI	ACTGG	1 cut(s)	76
BssECI	CCNNGG	3 cut(s)	162, 228, 249
BssMI	GATC	2 cut(s)	22, 258
BssT1I	CCWWGG	3 cut(s)	162, 228, 249
BstDEI	CTNAG	1 cut(s)	174
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	2 cut(s)	25, 261
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	2 cut(s)	22, 258
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BsuRI	GGCC	1 cut(s)	5
CfoI	GCGC	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	1 cut(s)	16
CviJI	RGCY	6 cut(s)	5, 14, 35, 88, 167, 237
CviKI_1	RGCY	6 cut(s)	5, 14, 35, 88, 167, 237
CviQI	GTAC	1 cut(s)	159
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	2 cut(s)	24, 260
DpnII	GATC	2 cut(s)	22, 258
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	237
Eco130I	CCWWGG	3 cut(s)	162, 228, 249
Eco24I	GRGCYC	1 cut(s)	239
Eco53kI	GAGCTC	1 cut(s)	237
Eco88I	CYCGRG	1 cut(s)	92
EcoICRI	GAGCTC	1 cut(s)	237
EcoT14I	CCWWGG	3 cut(s)	162, 228, 249
EcoT38I	GRGCYC	1 cut(s)	239
ErhI	CCWWGG	3 cut(s)	162, 228, 249
Esp3I	CGTCTC	1 cut(s)	199
FaeI	CATG	1 cut(s)	19
FaiI	YATR	4 cut(s)	17, 41, 54, 188
FalI	AAGNNNNNCTT	2 cut(s)	185, 217
FatI	CATG	1 cut(s)	15
FriOI	GRGCYC	1 cut(s)	239
FspBI	CTAG	1 cut(s)	147
GlaI	GCGC	1 cut(s)	81
GsuI	CTGGAG	3 cut(s)	93, 104, 223
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	6
HhaI	GCGC	1 cut(s)	82
Hin1II	CATG	1 cut(s)	19
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	1 cut(s)	122
Hpy188I	TCNGA	1 cut(s)	263
Hpy188III	TCNNGA	1 cut(s)	173
HpyCH4V	TGCA	1 cut(s)	56
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	174
Hsp92II	CATG	1 cut(s)	19
HspAI	GCGC	1 cut(s)	80
Kzo9I	GATC	2 cut(s)	22, 258
LmnI	GCTCC	4 cut(s)	11, 32, 85, 242
LpnPI	CCDG	7 cut(s)	19, 33, 57, 68, 80, 186, 253
LweI	GCATC	2 cut(s)	67, 90
MaeI	CTAG	1 cut(s)	147
MalI	GATC	2 cut(s)	24, 260
MboI	GATC	2 cut(s)	22, 258
MhlI	GDGCHC	1 cut(s)	239
MnlI	CCTC	6 cut(s)	101, 106, 115, 183, 203, 210
MspI	CCGG	1 cut(s)	6
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	2 cut(s)	22, 258
NlaIII	CATG	1 cut(s)	19
NlaIV	GGNNCC	1 cut(s)	13
Psp124BI	GAGCTC	1 cut(s)	239
PspN4I	GGNNCC	1 cut(s)	13
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
SacI	GAGCTC	1 cut(s)	239
Sau3AI	GATC	2 cut(s)	22, 258
SduI	GDGCHC	1 cut(s)	239
SetI	ASST	8 cut(s)	37, 90, 112, 164, 214, 230, 239, 255
SfaNI	GCATC	2 cut(s)	67, 90
SmlI	CTYRAG	1 cut(s)	202
SmoI	CTYRAG	1 cut(s)	202
SpeI	ACTAGT	1 cut(s)	146
SspMI	CTAG	1 cut(s)	147
SstI	GAGCTC	1 cut(s)	239
StyI	CCWWGG	3 cut(s)	162, 228, 249
TaqII	GACCGA	1 cut(s)	35
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.