Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003399

Physical Location & Seq

Genomic Coordinates Forward (+)

65861101 .. 65866393

Gene Structure 5293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0529200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2730 bp

ATGGTGAAGATGATAGTAGCGGCGGCCCTCGCTTCTCTCTGCGTCTTCTTCCTCTACCGGAGGAGACGCCGAAACTGCCCCCAAACTCACTGTTATTTACGAGACGACCCGAACAAGCCGCAGCACGGATTCAAGCGAGTCTTGGCCGACAATTCCTACTCTCCGTTCAAGCATTTCAACCCCGCCGACGTCGGCGGAGCAGATAAGAATTGGAATTCGCATCCTTATGAGGCGGAGATCACGGCGGTGATGGAAAGTCCGCCGATTGAGCTGAAATGTGTGACGGAGCATTTGGATTCGGAAATGAGGGAGGAGTATGTTTGGGTTGAGAACGAGACTCAGTTGAAGGAAATGGTTGAGGTTTTGAGTAGAGAGAAGATCTTTGGGGTTGATACTGAGCAGCATAGCTTAAGGTCATTTTTGGGATTTACTGCTTTGATACAGATTTCGACTGAGAAGGAAGATTATTTGGTGGACACTATTGCTTTACATGACAGTATGAGCCTTTTGCAGCCGGTTTTCGCCGATGCTAGTGTCTGCAAGGTGTTTCATGGGGCAGATAGTGATGTTCTCTGGCTGCAAAGGGACTTTCATATTTATGTTGTCAATATGTTTGATACTGCAAAGGCTTGTGAAGTGTTGTCAAAACCGCAGAAATCACTGGCTTATTTACTTGAATCTTACTGTGGAGTCGTCACTAACAAATTGTTTCAGCGTGAAGACTGGAGACAACGCCCTTTGTCAATGGAAATGGTGCAATATGCTCGGACAGATGCACACTATCTACTTTACATTGCAGGCCGTTTACTAGCTGAGCTGGGTGTGCTGGATAATGAAAACTCTTGTCCCAATGACAAATTCCGTTTTGTTCTCGAGGCTAGTCGGCGTTCAAACATGATATGTTTGCAACTGTATACGAAAGACATAGAAGCTTCGCCTGGAGAGTCTGCTGCTTCATCAATATTTGGCCGTCATTTAAATGGCCAAGGAGGCATTTCATCAGCATCATATGAAATCCAGAATTCTGTGAGACGACTTTGTGCATGGAGAGATTTGATGGCTCGTGTACATGATGAGAGCTTGAGATATGTAATATCAGATCAGGCTATTGTTGCCCTTGCAGAAAAAGCTCCAACTAACCCTGCAGACATGTTAACCACCTTTGCAGAAGCTGATGATAATGTGGATTCGAGTTTCAATTCTGGCCTCTCATCTCCCTCTCCTGTGGTCTGCAGTCATTTGAATGATTTTCATTATCTGCTCCAGAACAAAGCAGGCAATCCTGATGATCTCTTACCCATGATTCTTCAGAACTGCCTGGGTCAAAAAGGGAGTTGCCCACTGTCTGTCTTCAACTATGCTTTACTGGTTAATTATAATATGAAAGTACCACAGGTTTCTAAACAAAATGGGGTCAGAAATCCAAAGCAAGTCGGTCGAATGGCTTCGCGAAAGCTGTTTGTTCAAAAATTTTCCTGCAAATCCCCAGTTTATCATAATTGCAGGATCTATGCAAATGATGGGCGTTTGCTGTGTTACTGTGACCGCAGAAAGCTTGAATGGTATCTTCGTCGGAATTTGGCTAAACTTGTTGAGGACAATCCACCTGGAATTATGCTTCTTTTTGAGCCCAAAGGCCGTCCCGAAGATGAAGGCAATGATTTCTACATTCAAAGTAAGAAAAATATGTGTGTTGGCTGCGGTGAAAGAAATCATTATTTACGGTACCGAATTATTCCCTCATGCTACAGAATGCACTTCCCTGAACATTTGAAAAGCCACCGTTCTCATGATATTGTCCTACTATGCGTGGACTGTCACGAAATTGCTCATGCCGCTGCAGAGAAGTATAAAAGAAAGATTGCTGCAGAATTTGGGATTCCACTTTTTGTTCGTAAAGTGGTTGATTCGCAACAAGCTCAATCTTTATCTGGGGCATCTGTGCCTGCAACAACTGTTGAGGAAGCAGGTGTATCTCCTTTACAGTTGCGAACTGCTGCTATGGCTCTTTTGCGCCATGGATCAACAATGCCATCCAAGCGCCGTGAGGAACTGACAGAGATTGTTATGACATTTTATGGAGGGAGGCAAATCTCTGAGGAAGATTTAGAAAAGGCTTTGCTTGTTGGGATGACTCCTCATGAGAAAAGACGACTTCAGAAGAAGAAAGGGTTTTCTTTTCAACATTCTAGAGGGAGTATTTCTTCAGATGCAGAGGAGATAATTACTGTTAACATGTCCACATCTGCCACTCCAGATGCTTCAGAAGTTGATACTGTACATGAATCTTGCACCAATGAAGCCAAAGCATCTATGATAGACCAAGATGAAGATGTTTTCACAGTGAAGGATGCTGATTTAGGCAACTCCACTTTAGATTTGAGGATTGATGAAAAAGCATCTCCAAGCAATGAGAAGAACATGAGTTCAGAGATAACCAGAGTGTCCGATACTACACTTGTTTCTGTTGTCAATGGTGATGCTATTTATGACGGTAGAAGTACACCAAATGGATCAGTACACTTCCGTTCTACTTCCAAACGTAATCATAAATCAAAACACTCCCTCTTAGGACATGGTCCACATGGAAGGCAAGTTGTGGATCATCTGCTAAAGGAATCCGGAGAAGATGGTATTAGTCAGTTCTGTCAAAGGTGGAGACAAGTATTTGTTGAAACTGTTCATCCCCGTTTTTTACCTGCCGGCTGGGATATTACACACAGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

909

Amino Acids

102.76

Weight (kDa)

6.65

Isoelectric Point (pI)

52.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_A_exo1	PF01612	106 - 273	1.1e-49	3'-5' exonuclease
HRDC	PF00570	343 - 386	1.2e-09	HRDC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39520 AT5G39530 AT5G39530
fragaria_vesca	FvH4_6g48000 FvH4_6g48001
malus_domestica	MD09G1055000.v1.1 MD09G1055400.v1.1 MD17G1053100.v1.1
prunus_persica	Prupe.3G263500_v2.0.a1
pyrus_communis	pycom111g04640
rosa_chinensis	RchiOBHm_Chr2g0167241 RchiOBHm_Chr2g0167251 RchiOBHm_Chr2g0167291
rosa_laevigata	RLG00000021702 RLG00000021703
rosa_multiflora	Rmu_sc0015771.1_g000011 Rmu_sc0030724.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083640 Rroxscaffold_2G00083650 Rroxscaffold_2G00083660
rosa_rugosa	Rorug02G0529200 Rorug02G0529200 Rorug02G0529300
rosa_samantha	Rh2AG596200 Rh2BG607200 Rh2BG607300 Rh2BG607500 Rh2CG578200 Rh2CG578300 Rh2DG618800 Rh2DG618900 Rh2DG619000
rosa_wichuraiana	Rw0G018240 Rw0G018250 Rw2G049610 Rw2G049620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1377
AarI	CACCTGC	1 cut(s)	1958
AatII	GACGTC	1 cut(s)	192
Acc36I	ACCTGC	2 cut(s)	1958, 2707
Acc65I	GGTACC	1 cut(s)	1725
AccB1I	GGYRCC	1 cut(s)	1725
AccI	GTMKAC	1 cut(s)	914
AccII	CGCG	1 cut(s)	1450
AccIII	TCCGGA	1 cut(s)	2621
AclWI	GGATC	4 cut(s)	1514, 2029, 2521, 2610
AcoI	YGGCCR	3 cut(s)	144, 967, 982
AcsI	RAATTY	6 cut(s)	214, 857, 1021, 1469, 1576, 1871
AcuI	CTGAAG	4 cut(s)	1292, 2141, 2190, 2247
AcyI	GRCGYC	2 cut(s)	67, 189
AfaI	GTAC	6 cut(s)	1068, 1389, 1727, 2280, 2503, 2520
AfiI	CCNNNNNNNGG	1 cut(s)	125
AflII	CTTAAG	1 cut(s)	409
AflIII	ACRYGT	2 cut(s)	1149, 2235
AjnI	CCWGG	3 cut(s)	937, 1317, 1606
AjuI	GAANNNNNNNTTGG	2 cut(s)	842, 874
AleI	CACNNNNGTG	1 cut(s)	245
Alw26I	GTCTC	6 cut(s)	58, 96, 329, 721, 1024, 2653
AlwI	GGATC	4 cut(s)	1514, 2029, 2521, 2610
AlwNI	CAGNNNCTG	1 cut(s)	1172
Ama87I	CYCGRG	1 cut(s)	872
Aor13HI	TCCGGA	1 cut(s)	2621
AoxI	GGCC	7 cut(s)	24, 144, 799, 967, 982, 1204, 1636
ApeKI	GCWGC	9 cut(s)	121, 400, 511, 577, 950, 1698, 1838, 1865, 1997
ApoI	RAATTY	6 cut(s)	214, 857, 1021, 1469, 1576, 1871
ArsI	GACNNNNNNTTYG	2 cut(s)	274, 306
Asp700I	GAANNNNTTC	2 cut(s)	1444, 2679
Asp718I	GGTACC	1 cut(s)	1725
AspLEI	GCGC	2 cut(s)	2016, 2043
AspS9I	GGNCC	2 cut(s)	25, 2579
AsuHPI	GGTGA	4 cut(s)	16, 259, 1715, 2489
AvaI	CYCGRG	1 cut(s)	872
AvaII	GGWCC	1 cut(s)	2579
BalI	TGGCCA	1 cut(s)	984
BanI	GGYRCC	1 cut(s)	1725
BanII	GRGCYC	1 cut(s)	1632
BauI	CACGAG	1 cut(s)	1062
BbsI	GAAGAC	3 cut(s)	37, 726, 1342
BbvI	GCAGC	9 cut(s)	133, 412, 523, 564, 937, 1685, 1825, 1852, 1984
BccI	CCATC	5 cut(s)	244, 1051, 1514, 2041, 2624
BceAI	ACGGC	5 cut(s)	258, 786, 954, 1623, 2028
BcgI	CGANNNNNNTGC	4 cut(s)	746, 780, 1418, 1452
BciT130I	CCWGG	3 cut(s)	939, 1319, 1608
BcoDI	GTCTC	6 cut(s)	58, 96, 329, 721, 1024, 2653
BfaI	CTAG	4 cut(s)	531, 809, 879, 2190
BfmI	CTRYAG	5 cut(s)	1143, 1231, 1747, 1839, 1866
BfoI	RGCGCY	1 cut(s)	2044
BfrI	CTTAAG	1 cut(s)	409
BfuAI	ACCTGC	2 cut(s)	1958, 2707
BglI	GCCNNNNNGGC	1 cut(s)	990
BglII	AGATCT	1 cut(s)	378
BlpI	GCTNAGC	1 cut(s)	813
Bme1390I	CCNGG	3 cut(s)	939, 1319, 1608
Bme18I	GGWCC	1 cut(s)	2579
BmeT110I	CYCGRG	1 cut(s)	872
BmgT120I	GGNCC	2 cut(s)	25, 2579
BmiI	GGNNCC	1 cut(s)	1727
BmrFI	CCNGG	3 cut(s)	939, 1319, 1608
BmrI	ACTGGG	1 cut(s)	1481
BmuI	ACTGGG	1 cut(s)	1481
BpiI	GAAGAC	3 cut(s)	37, 726, 1342
BpmI	CTGGAG	4 cut(s)	745, 960, 1247, 2238
Bpu1102I	GCTNAGC	1 cut(s)	813
BpuEI	CTTGAG	1 cut(s)	1102
BsaHI	GRCGYC	2 cut(s)	67, 189
BsaJI	CCNNGG	3 cut(s)	985, 1318, 2017
BsaWI	WCCGGW	2 cut(s)	57, 2621
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse118I	RCCGGY	2 cut(s)	514, 2702
Bse1I	ACTGG	4 cut(s)	666, 728, 1371, 1487
Bse3DI	GCAATG	3 cut(s)	792, 1663, 2416
BseAI	TCCGGA	1 cut(s)	2621
BseBI	CCWGG	3 cut(s)	939, 1319, 1608
BseDI	CCNNGG	3 cut(s)	985, 1318, 2017
BseGI	GGATG	5 cut(s)	220, 2033, 2136, 2356, 2683
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseMI	GCAATG	3 cut(s)	792, 1663, 2416
BseMII	CTCAG	5 cut(s)	353, 387, 444, 804, 2088
BseNI	ACTGG	4 cut(s)	666, 728, 1371, 1487
BseRI	GAGGAG	4 cut(s)	76, 326, 2127, 2231
BseXI	GCAGC	9 cut(s)	133, 412, 523, 564, 937, 1685, 1825, 1852, 1984
BseYI	CCCAGC	2 cut(s)	817, 2706
Bsh1236I	CGCG	1 cut(s)	1450
Bsh1285I	CGRYCG	1 cut(s)	1438
BshFI	GGCC	7 cut(s)	26, 146, 801, 969, 984, 1206, 1638
BshNI	GGYRCC	1 cut(s)	1725
BsiEI	CGRYCG	1 cut(s)	1438
BsiHKCI	CYCGRG	1 cut(s)	872
BsiSI	CCGG	4 cut(s)	58, 515, 2622, 2703
BslFI	GGGAC	3 cut(s)	599, 831, 1626
BslI	CCNNNNNNNGG	1 cut(s)	125
BsmAI	GTCTC	6 cut(s)	58, 96, 329, 721, 1024, 2653
BsmBI	CGTCTC	3 cut(s)	58, 96, 1024
BsmFI	GGGAC	3 cut(s)	599, 831, 1626
BsmI	GAATGC	1 cut(s)	1758
BsnI	GGCC	7 cut(s)	26, 146, 801, 969, 984, 1206, 1638
BsoBI	CYCGRG	1 cut(s)	872
Bsp1286I	GDGCHC	1 cut(s)	1632
Bsp13I	TCCGGA	1 cut(s)	2621
Bsp1407I	TGTACA	2 cut(s)	1066, 2278
Bsp143I	GATC	8 cut(s)	237, 378, 1099, 1288, 1506, 2021, 2513, 2602
Bsp1720I	GCTNAGC	1 cut(s)	813
Bsp19I	CCATGG	1 cut(s)	2017
Bsp68I	TCGCGA	1 cut(s)	1450
BspANI	GGCC	7 cut(s)	26, 146, 801, 969, 984, 1206, 1638
BspCNI	CTCAG	5 cut(s)	352, 388, 445, 805, 2089
BspEI	TCCGGA	1 cut(s)	2621
BspFNI	CGCG	1 cut(s)	1450
BspHI	TCATGA	2 cut(s)	1789, 2140
BspLI	GGNNCC	1 cut(s)	1727
BspMAI	CTGCAG	4 cut(s)	1147, 1235, 1843, 1870
BspMI	ACCTGC	2 cut(s)	1958, 2707
BspPI	GGATC	4 cut(s)	1514, 2029, 2521, 2610
BspT107I	GGYRCC	1 cut(s)	1725
BspTI	CTTAAG	1 cut(s)	409
BsrDI	GCAATG	3 cut(s)	792, 1663, 2416
BsrFI	RCCGGY	2 cut(s)	514, 2702
BsrGI	TGTACA	2 cut(s)	1066, 2278
BsrI	ACTGG	4 cut(s)	666, 728, 1371, 1487
BssAI	RCCGGY	2 cut(s)	514, 2702
BssECI	CCNNGG	3 cut(s)	985, 1318, 2017
BssMI	GATC	8 cut(s)	237, 378, 1099, 1288, 1506, 2021, 2513, 2602
BssNAI	GTATAC	1 cut(s)	915
BssNI	GRCGYC	2 cut(s)	67, 189
BssSI	CACGAG	1 cut(s)	1062
BssT1I	CCWWGG	2 cut(s)	985, 2017
Bst1107I	GTATAC	1 cut(s)	915
Bst2BI	CACGAG	1 cut(s)	1062
Bst2UI	CCWGG	3 cut(s)	939, 1319, 1608
BstACI	GRCGYC	2 cut(s)	67, 189
BstAFI	CTTAAG	1 cut(s)	409
BstAUI	TGTACA	2 cut(s)	1066, 2278
BstC8I	GCNNGC	4 cut(s)	799, 1276, 1947, 2704
BstDEI	CTNAG	6 cut(s)	339, 396, 453, 813, 2097, 2569
BstDSI	CCRYGG	1 cut(s)	2017
BstF5I	GGATG	5 cut(s)	220, 2033, 2136, 2356, 2683
BstFNI	CGCG	1 cut(s)	1450
BstH2I	RGCGCY	1 cut(s)	2044
BstHHI	GCGC	2 cut(s)	2016, 2043
BstKTI	GATC	8 cut(s)	240, 381, 1102, 1291, 1509, 2024, 2516, 2605
BstMAI	GTCTC	6 cut(s)	58, 96, 329, 721, 1024, 2653
BstMBI	GATC	8 cut(s)	237, 378, 1099, 1288, 1506, 2021, 2513, 2602
BstMCI	CGRYCG	1 cut(s)	1438
BstNI	CCWGG	3 cut(s)	939, 1319, 1608
BstNSI	RCATGY	2 cut(s)	1153, 2239
BstSCI	CCNGG	3 cut(s)	937, 1317, 1606
BstSFI	CTRYAG	5 cut(s)	1143, 1231, 1747, 1839, 1866
BstUI	CGCG	1 cut(s)	1450
BstV1I	GCAGC	9 cut(s)	133, 412, 523, 564, 937, 1685, 1825, 1852, 1984
BstV2I	GAAGAC	3 cut(s)	37, 726, 1342
BstX2I	RGATCY	2 cut(s)	378, 1506
BstYI	RGATCY	2 cut(s)	378, 1506
BstZ17I	GTATAC	1 cut(s)	915
BsuRI	GGCC	7 cut(s)	26, 146, 801, 969, 984, 1206, 1638
BtgI	CCRYGG	1 cut(s)	2017
BtsCI	GGATG	5 cut(s)	220, 2033, 2136, 2356, 2683
BtsIMutI	CAGTG	4 cut(s)	88, 659, 1340, 2349
BtuMI	TCGCGA	1 cut(s)	1450
BveI	ACCTGC	2 cut(s)	1958, 2707
Cac8I	GCNNGC	4 cut(s)	799, 1276, 1947, 2704
CaiI	CAGNNNCTG	1 cut(s)	1172
CciI	TCATGA	2 cut(s)	1789, 2140
CfoI	GCGC	2 cut(s)	2016, 2043
Cfr10I	RCCGGY	2 cut(s)	514, 2702
Cfr13I	GGNCC	2 cut(s)	25, 2579
CseI	GACGC	2 cut(s)	31, 75
Csp6I	GTAC	6 cut(s)	1067, 1388, 1726, 2279, 2502, 2519
CviQI	GTAC	6 cut(s)	1067, 1388, 1726, 2279, 2502, 2519
DdeI	CTNAG	6 cut(s)	339, 396, 453, 813, 2097, 2569
DpnI	GATC	8 cut(s)	239, 380, 1101, 1290, 1508, 2023, 2515, 2604
DpnII	GATC	8 cut(s)	237, 378, 1099, 1288, 1506, 2021, 2513, 2602
DraI	TTTAAA	1 cut(s)	978
EaeI	YGGCCR	3 cut(s)	144, 967, 982
EciI	GGCGGA	3 cut(s)	210, 248, 249
Eco130I	CCWWGG	2 cut(s)	985, 2017
Eco24I	GRGCYC	1 cut(s)	1632
Eco47I	GGWCC	1 cut(s)	2579
Eco57I	CTGAAG	4 cut(s)	1292, 2141, 2190, 2247
Eco88I	CYCGRG	1 cut(s)	872
EcoRI	GAATTC	2 cut(s)	214, 1021
EcoRII	CCWGG	3 cut(s)	937, 1317, 1606
EcoT14I	CCWWGG	2 cut(s)	985, 2017
EcoT38I	GRGCYC	1 cut(s)	1632
ErhI	CCWWGG	2 cut(s)	985, 2017
Esp3I	CGTCTC	3 cut(s)	58, 96, 1024
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FaqI	GGGAC	3 cut(s)	599, 831, 1626
FauI	CCCGC	1 cut(s)	190
FauNDI	CATATG	1 cut(s)	1009
FblI	GTMKAC	1 cut(s)	914
FokI	GGATG	5 cut(s)	207, 2020, 2143, 2363, 2670
FriOI	GRGCYC	1 cut(s)	1632
FspBI	CTAG	4 cut(s)	531, 809, 879, 2190
GlaI	GCGC	2 cut(s)	2015, 2042
GsaI	CCCAGC	2 cut(s)	821, 2710
GsuI	CTGGAG	4 cut(s)	745, 960, 1247, 2238
HaeII	RGCGCY	1 cut(s)	2044
HaeIII	GGCC	7 cut(s)	26, 146, 801, 969, 984, 1206, 1638
HapII	CCGG	4 cut(s)	58, 515, 2622, 2703
HgaI	GACGC	2 cut(s)	31, 75
HhaI	GCGC	2 cut(s)	2016, 2043
Hin1I	GRCGYC	2 cut(s)	67, 189
Hin6I	GCGC	2 cut(s)	2014, 2041
HinP1I	GCGC	2 cut(s)	2014, 2041
HincII	GTYRAC	2 cut(s)	1155, 2233
HindII	GTYRAC	2 cut(s)	1155, 2233
HindIII	AAGCTT	2 cut(s)	930, 1553
HpaI	GTTAAC	2 cut(s)	1155, 2233
HpaII	CCGG	4 cut(s)	58, 515, 2622, 2703
HphI	GGTGA	4 cut(s)	16, 259, 1715, 2489
Hpy99I	CGWCG	3 cut(s)	191, 194, 1575
HpyAV	CCTTC	5 cut(s)	340, 451, 1646, 2341, 2583
HpyCH4IV	ACGT	2 cut(s)	189, 2542
HpyF3I	CTNAG	6 cut(s)	339, 396, 453, 813, 2097, 2569
HpySE526I	ACGT	2 cut(s)	189, 2542
Hsp92I	GRCGYC	2 cut(s)	67, 189
HspAI	GCGC	2 cut(s)	2014, 2041
Kpn2I	TCCGGA	1 cut(s)	2621
KpnI	GGTACC	1 cut(s)	1729
KroI	GCCGGC	1 cut(s)	2702
KroNI	GCCGGC	1 cut(s)	2704
KspAI	GTTAAC	2 cut(s)	1155, 2233
Kzo9I	GATC	8 cut(s)	237, 378, 1099, 1288, 1506, 2021, 2513, 2602
LmnI	GCTCC	4 cut(s)	197, 286, 1135, 1266
Lsp1109I	GCAGC	9 cut(s)	133, 412, 523, 564, 937, 1685, 1825, 1852, 1984
MaeI	CTAG	4 cut(s)	531, 809, 879, 2190
MaeII	ACGT	2 cut(s)	189, 2542
MaeIII	GTNAC	5 cut(s)	280, 694, 1535, 1541, 1817
MalI	GATC	8 cut(s)	239, 380, 1101, 1290, 1508, 2023, 2515, 2604
MboI	GATC	8 cut(s)	237, 378, 1099, 1288, 1506, 2021, 2513, 2602
MflI	RGATCY	2 cut(s)	378, 1506
MhlI	GDGCHC	1 cut(s)	1632
MlsI	TGGCCA	1 cut(s)	984
MluNI	TGGCCA	1 cut(s)	984
MlyI	GAGTC	5 cut(s)	147, 331, 699, 953, 2128
MmeI	TCCRAC	2 cut(s)	1157, 1553
Mox20I	TGGCCA	1 cut(s)	984
MroI	TCCGGA	1 cut(s)	2621
MroNI	GCCGGC	1 cut(s)	2702
MroXI	GAANNNNTTC	2 cut(s)	1444, 2679
MscI	TGGCCA	1 cut(s)	984
MseI	TTAA	5 cut(s)	410, 977, 1154, 1371, 2232
MslI	CAYNNNNRTG	5 cut(s)	225, 245, 597, 978, 1242
Msp20I	TGGCCA	1 cut(s)	984
MspA1I	CMGCKG	1 cut(s)	1838
MspCI	CTTAAG	1 cut(s)	409
MspI	CCGG	4 cut(s)	58, 515, 2622, 2703
MspR9I	CCNGG	3 cut(s)	939, 1319, 1608
Mva1269I	GAATGC	1 cut(s)	1758
MvaI	CCWGG	3 cut(s)	939, 1319, 1608
MvnI	CGCG	1 cut(s)	1450
NaeI	GCCGGC	1 cut(s)	2704
NcoI	CCATGG	1 cut(s)	2017
NdeI	CATATG	1 cut(s)	1009
NdeII	GATC	8 cut(s)	237, 378, 1099, 1288, 1506, 2021, 2513, 2602
NgoMIV	GCCGGC	1 cut(s)	2702
NlaIV	GGNNCC	1 cut(s)	1727
NmuCI	GTSAC	4 cut(s)	280, 694, 1541, 1817
NruI	TCGCGA	1 cut(s)	1450
NspI	RCATGY	2 cut(s)	1153, 2239
OliI	CACNNNNGTG	1 cut(s)	245
PaeR7I	CTCGAG	1 cut(s)	872
PagI	TCATGA	2 cut(s)	1789, 2140
PaqCI	CACCTGC	1 cut(s)	1958
PciI	ACATGT	2 cut(s)	1149, 2235
PctI	GAATGC	1 cut(s)	1758
PdiI	GCCGGC	1 cut(s)	2704
PdmI	GAANNNNTTC	2 cut(s)	1444, 2679
PfeI	GAWTC	9 cut(s)	129, 296, 677, 1187, 1303, 1879, 1907, 2285, 2618
PflFI	GACNNNGTC	1 cut(s)	2577
PleI	GAGTC	5 cut(s)	146, 331, 698, 952, 2128
PpsI	GAGTC	5 cut(s)	146, 331, 698, 952, 2128
PscI	ACATGT	2 cut(s)	1149, 2235
PsiI	TTATAA	1 cut(s)	1377
Psp6I	CCWGG	3 cut(s)	937, 1317, 1606
PspFI	CCCAGC	2 cut(s)	817, 2706
PspGI	CCWGG	3 cut(s)	937, 1317, 1606
PspN4I	GGNNCC	1 cut(s)	1727
PspPI	GGNCC	2 cut(s)	25, 2579
PstI	CTGCAG	4 cut(s)	1147, 1235, 1843, 1870
PstNI	CAGNNNCTG	1 cut(s)	1172
PsuI	RGATCY	2 cut(s)	378, 1506
PsyI	GACNNNGTC	1 cut(s)	2577
RruI	TCGCGA	1 cut(s)	1450
RsaI	GTAC	6 cut(s)	1068, 1389, 1727, 2280, 2503, 2520
RsaNI	GTAC	6 cut(s)	1067, 1388, 1726, 2279, 2502, 2519
RseI	CAYNNNNRTG	5 cut(s)	225, 245, 597, 978, 1242
SaqAI	TTAA	5 cut(s)	410, 977, 1154, 1371, 2232
Sau3AI	GATC	8 cut(s)	237, 378, 1099, 1288, 1506, 2021, 2513, 2602
Sau96I	GGNCC	2 cut(s)	25, 2579
SchI	GAGTC	5 cut(s)	147, 331, 699, 953, 2128
ScrFI	CCNGG	3 cut(s)	939, 1319, 1608
SduI	GDGCHC	1 cut(s)	1632
SfcI	CTRYAG	5 cut(s)	1143, 1231, 1747, 1839, 1866
Sfr274I	CTCGAG	1 cut(s)	872
SinI	GGWCC	1 cut(s)	2579
SlaI	CTCGAG	1 cut(s)	872
SmiI	ATTTAAAT	1 cut(s)	978
SmiMI	CAYNNNNRTG	5 cut(s)	225, 245, 597, 978, 1242
SmlI	CTYRAG	3 cut(s)	409, 872, 1081
SmoI	CTYRAG	3 cut(s)	409, 872, 1081
SspI	AATATT	1 cut(s)	963
SspMI	CTAG	4 cut(s)	531, 809, 879, 2190
StyD4I	CCNGG	3 cut(s)	937, 1317, 1606
StyI	CCWWGG	2 cut(s)	985, 2017
SwaI	ATTTAAAT	1 cut(s)	978
TaiI	ACGT	2 cut(s)	192, 2545
TaqI	TCGA	4 cut(s)	449, 873, 1190, 1438
TaqII	GACCGA	1 cut(s)	1424
TatI	WGTACW	4 cut(s)	1066, 2278, 2501, 2518
TauI	GCSGC	4 cut(s)	23, 26, 121, 1838
TfiI	GAWTC	9 cut(s)	129, 296, 677, 1187, 1303, 1879, 1907, 2285, 2618
Tru1I	TTAA	5 cut(s)	410, 977, 1154, 1371, 2232
Tru9I	TTAA	5 cut(s)	410, 977, 1154, 1371, 2232
TscAI	CASTG	4 cut(s)	95, 666, 1347, 2349
TseFI	GTSAC	4 cut(s)	280, 694, 1541, 1817
TseI	GCWGC	9 cut(s)	121, 400, 511, 577, 950, 1698, 1838, 1865, 1997
Tsp45I	GTSAC	4 cut(s)	280, 694, 1541, 1817
TspGWI	ACGGA	5 cut(s)	141, 153, 299, 851, 2516
TspRI	CASTG	4 cut(s)	95, 666, 1347, 2349
Tth111I	GACNNNGTC	1 cut(s)	2577
Vha464I	CTTAAG	1 cut(s)	409
VpaK11BI	GGWCC	1 cut(s)	2579
XapI	RAATTY	6 cut(s)	214, 857, 1021, 1469, 1576, 1871
XbaI	TCTAGA	1 cut(s)	2189
XceI	RCATGY	2 cut(s)	1153, 2239
XhoI	CTCGAG	1 cut(s)	872
XmiI	GTMKAC	1 cut(s)	914
XmnI	GAANNNNTTC	2 cut(s)	1444, 2679
XspI	CTAG	4 cut(s)	531, 809, 879, 2190
ZraI	GACGTC	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.