RchiOBHm_Chr2g0167241

Protein of unknown function (DUF1997)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003399
Physical Location & Seq
Reverse (-)
81829303 .. 81830717
1415 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53504

Sequence Viewer

Length: 831 bp
ATGGTTGAGGCAATTGCTGTCTGCAGAATTCTTGATAGAGGTATGCCTTCTGGCCCAGAAAAGCTGAAGGTGAAGCTGAAAAAGAAGCAGCAGGACAGGCATTGCCATTATGCAAAGGCGCTATTCAACTTGCCGAAAAAGGATGACCAGATGAAACCTTTAACCTTGCACCACAGAATCACTACTGTTGCCCTACTCTGTGAGCCCTCCAAGGCTTCATTTGATCAATATTTGGAGGATGAACAAAGGGTTATTAAAGCCCTATTTCCAGGCATAGAGGCAAGAAAACTTAACAAGAAAGCGTGGAGGATTCAAATGCCAACCATGCAATTATTGTTCATGTCTGTCTGCCTTGTATTATACATCAGTTTAAGATACAAGTCCAAAGGGAAAGACTACCCTCCTCATGTTCCTCATCACATTCCCATGGTCCTTGAGCTTGAAGCTACAAGGTGGGAACTTGAGGGCTTCCCCTATGAGTACCGGCCACGTGACTTTAGCATATCTGCTAAAGGAACCTTATATCCTGATAGAAAGCAAGGAACACAAAGCAAGCTTCGAACCCAGATTGACGTAATCTTAAGCTTCATTGTTTCACCTCTGCTTGGTTGGGTTCCACAAAGTGTTATGCATAGCCTCATAAAATCGACTGTGATGGCGGATTCGACATCCAATGCCAGATTGCTTGAAGACTATGATGTATTCAAAACGAAGAATGTGGTTCAGTACTCCGTGAAAGATCCTTGGAACGATCAGCTCTTGATTCGTTGTATTGAAATATATAAAAACAAGTTAAGAAATGAGTGGGATTGTGAAAAGGAAAGGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1997

Protein Analysis

276

Amino Acids

32.29

Weight (kDa)

9.33

Isoelectric Point (pI)

45.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1997 PF09366 74 - 215 5.1e-22 Protein of unknown function (DUF1997)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 659
AclWI GGATC 1 cut(s) 734
AcoI YGGCCR 1 cut(s) 485
AcsI RAATTY 1 cut(s) 27
AcuI CTGAAG 1 cut(s) 86
AcvI CACGTG 1 cut(s) 491
AdeI CACNNNGTG 1 cut(s) 623
AfaI GTAC 2 cut(s) 482, 728
AfiI CCNNNNNNNGG 1 cut(s) 605
AflII CTTAAG 1 cut(s) 580
AgsI TTSAA 6 cut(s) 127, 314, 443, 689, 706, 776
AjnI CCWGG 1 cut(s) 268
AloI GAACNNNNNNTCC 2 cut(s) 508, 540
AluBI AGCT 7 cut(s) 64, 76, 439, 446, 556, 585, 757
AluI AGCT 7 cut(s) 64, 76, 439, 446, 556, 585, 757
AlwI GGATC 1 cut(s) 734
AoxI GGCC 2 cut(s) 52, 485
ApeKI GCWGC 1 cut(s) 88
ApoI RAATTY 1 cut(s) 27
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 2 cut(s) 53, 430
AsuHPI GGTGA 2 cut(s) 82, 588
AsuII TTCGAA 1 cut(s) 559
AvaII GGWCC 1 cut(s) 430
BanII GRGCYC 1 cut(s) 207
BbrPI CACGTG 1 cut(s) 491
BbsI GAAGAC 1 cut(s) 696
BbvI GCAGC 1 cut(s) 100
BccI CCATC 1 cut(s) 649
BciT130I CCWGG 1 cut(s) 270
BclI TGATCA 1 cut(s) 223
BfmI CTRYAG 1 cut(s) 22
BfoI RGCGCY 1 cut(s) 122
BfrI CTTAAG 1 cut(s) 580
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
BmcAI AGTACT 1 cut(s) 728
Bme1390I CCNGG 1 cut(s) 270
Bme18I GGWCC 1 cut(s) 430
BmgT120I GGNCC 2 cut(s) 53, 430
BmiI GGNNCC 2 cut(s) 517, 615
BmrFI CCNGG 1 cut(s) 270
BpiI GAAGAC 1 cut(s) 696
Bpu14I TTCGAA 1 cut(s) 559
BpuEI CTTGAG 2 cut(s) 455, 482
BsaAI YACGTR 1 cut(s) 491
BsaJI CCNNGG 3 cut(s) 210, 426, 743
Bsc4I CCNNNNNNNGG 1 cut(s) 605
Bse118I RCCGGY 1 cut(s) 483
Bse3DI GCAATG 1 cut(s) 100
BseBI CCWGG 1 cut(s) 270
BseDI CCNNGG 3 cut(s) 210, 426, 743
BseGI GGATG 3 cut(s) 148, 244, 668
BseLI CCNNNNNNNGG 1 cut(s) 605
BseMI GCAATG 1 cut(s) 100
BseRI GAGGAG 1 cut(s) 393
BseXI GCAGC 1 cut(s) 100
BshFI GGCC 2 cut(s) 54, 487
BsiSI CCGG 1 cut(s) 484
BslI CCNNNNNNNGG 1 cut(s) 605
BsnI GGCC 2 cut(s) 54, 487
Bsp119I TTCGAA 1 cut(s) 559
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 3 cut(s) 223, 739, 751
Bsp19I CCATGG 1 cut(s) 426
BspACI CCGC 1 cut(s) 659
BspANI GGCC 2 cut(s) 54, 487
BspLI GGNNCC 2 cut(s) 517, 615
BspMAI CTGCAG 1 cut(s) 26
BspPI GGATC 1 cut(s) 734
BspT104I TTCGAA 1 cut(s) 559
BspTI CTTAAG 1 cut(s) 580
BsrDI GCAATG 1 cut(s) 100
BsrFI RCCGGY 1 cut(s) 483
BssAI RCCGGY 1 cut(s) 483
BssECI CCNNGG 3 cut(s) 210, 426, 743
BssMI GATC 3 cut(s) 223, 739, 751
BssT1I CCWWGG 3 cut(s) 210, 426, 743
Bst2UI CCWGG 1 cut(s) 270
Bst4CI ACNGT 2 cut(s) 187, 652
BstAFI CTTAAG 1 cut(s) 580
BstBAI YACGTR 1 cut(s) 491
BstBI TTCGAA 1 cut(s) 559
BstC8I GCNNGC 1 cut(s) 554
BstDSI CCRYGG 1 cut(s) 426
BstF5I GGATG 3 cut(s) 148, 244, 668
BstH2I RGCGCY 1 cut(s) 122
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 3 cut(s) 226, 742, 754
BstMBI GATC 3 cut(s) 223, 739, 751
BstMWI GCNNNNNNNGC 2 cut(s) 97, 325
BstNI CCWGG 1 cut(s) 270
BstSCI CCNGG 1 cut(s) 268
BstSFI CTRYAG 1 cut(s) 22
BstV1I GCAGC 1 cut(s) 100
BstV2I GAAGAC 1 cut(s) 696
BstX2I RGATCY 1 cut(s) 739
BstYI RGATCY 1 cut(s) 739
BsuRI GGCC 2 cut(s) 54, 487
BtgI CCRYGG 1 cut(s) 426
BtsCI GGATG 3 cut(s) 148, 244, 668
Cac8I GCNNGC 1 cut(s) 554
CfoI GCGC 1 cut(s) 121
Cfr10I RCCGGY 1 cut(s) 483
Cfr13I GGNCC 2 cut(s) 53, 430
Csp6I GTAC 2 cut(s) 481, 727
CviAII CATG 4 cut(s) 325, 340, 407, 427
CviQI GTAC 2 cut(s) 481, 727
DpnI GATC 3 cut(s) 225, 741, 753
DpnII GATC 3 cut(s) 223, 739, 751
DraIII CACNNNGTG 1 cut(s) 623
EaeI YGGCCR 1 cut(s) 485
EciI GGCGGA 1 cut(s) 674
Eco130I CCWWGG 3 cut(s) 210, 426, 743
Eco24I GRGCYC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 430
Eco57I CTGAAG 1 cut(s) 86
Eco72I CACGTG 1 cut(s) 491
EcoRI GAATTC 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 268
EcoT14I CCWWGG 3 cut(s) 210, 426, 743
EcoT22I ATGCAT 1 cut(s) 633
EcoT38I GRGCYC 1 cut(s) 207
ErhI CCWWGG 3 cut(s) 210, 426, 743
FaeI CATG 4 cut(s) 328, 343, 410, 430
FatI CATG 4 cut(s) 324, 339, 406, 426
FbaI TGATCA 1 cut(s) 223
Fnu4HI GCNGC 1 cut(s) 89
FokI GGATG 3 cut(s) 155, 251, 655
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 1 cut(s) 89
GlaI GCGC 1 cut(s) 120
GluI GCNGC 1 cut(s) 89
HaeII RGCGCY 1 cut(s) 122
HaeIII GGCC 2 cut(s) 54, 487
HapII CCGG 1 cut(s) 484
HhaI GCGC 1 cut(s) 121
Hin1II CATG 4 cut(s) 328, 343, 410, 430
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HindIII AAGCTT 2 cut(s) 554, 583
HinfI GANTC 4 cut(s) 177, 310, 662, 763
HpaII CCGG 1 cut(s) 484
HphI GGTGA 2 cut(s) 82, 588
Hpy188III TCNNGA 3 cut(s) 32, 527, 760
HpyAV CCTTC 2 cut(s) 57, 61
HpyCH4III ACNGT 2 cut(s) 187, 652
HpyCH4IV ACGT 2 cut(s) 490, 573
HpyCH4V TGCA 5 cut(s) 24, 113, 169, 328, 631
HpyF10VI GCNNNNNNNGC 2 cut(s) 97, 325
HpySE526I ACGT 2 cut(s) 490, 573
Hsp92II CATG 4 cut(s) 328, 343, 410, 430
HspAI GCGC 1 cut(s) 119
Ksp22I TGATCA 1 cut(s) 223
Kzo9I GATC 3 cut(s) 223, 739, 751
Lsp1109I GCAGC 1 cut(s) 100
MaeII ACGT 2 cut(s) 490, 573
MaeIII GTNAC 1 cut(s) 491
MalI GATC 3 cut(s) 225, 741, 753
MboI GATC 3 cut(s) 223, 739, 751
MboII GAAGA 2 cut(s) 701, 724
MfeI CAATTG 1 cut(s) 12
MflI RGATCY 1 cut(s) 739
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 3 cut(s) 12, 27, 329
Mph1103I ATGCAT 1 cut(s) 633
MseI TTAA 6 cut(s) 161, 255, 291, 371, 581, 794
MslI CAYNNNNRTG 1 cut(s) 425
MspCI CTTAAG 1 cut(s) 580
MspI CCGG 1 cut(s) 484
MspR9I CCNGG 1 cut(s) 270
MunI CAATTG 1 cut(s) 12
MvaI CCWGG 1 cut(s) 270
MwoI GCNNNNNNNGC 2 cut(s) 97, 325
NcoI CCATGG 1 cut(s) 426
NdeII GATC 3 cut(s) 223, 739, 751
NlaIII CATG 4 cut(s) 328, 343, 410, 430
NlaIV GGNNCC 2 cut(s) 517, 615
NmuCI GTSAC 1 cut(s) 491
NsiI ATGCAT 1 cut(s) 633
NspV TTCGAA 1 cut(s) 559
PfeI GAWTC 4 cut(s) 177, 310, 662, 763
PkrI GCNGC 1 cut(s) 90
PmaCI CACGTG 1 cut(s) 491
PmlI CACGTG 1 cut(s) 491
Ppu21I YACGTR 1 cut(s) 491
Psp6I CCWGG 1 cut(s) 268
PspCI CACGTG 1 cut(s) 491
PspGI CCWGG 1 cut(s) 268
PspN4I GGNNCC 2 cut(s) 517, 615
PspPI GGNCC 2 cut(s) 53, 430
PstI CTGCAG 1 cut(s) 26
PsuI RGATCY 1 cut(s) 739
RsaI GTAC 2 cut(s) 482, 728
RsaNI GTAC 2 cut(s) 481, 727
RseI CAYNNNNRTG 1 cut(s) 425
SaqAI TTAA 6 cut(s) 161, 255, 291, 371, 581, 794
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 3 cut(s) 223, 739, 751
Sau96I GGNCC 2 cut(s) 53, 430
ScaI AGTACT 1 cut(s) 728
ScrFI CCNGG 1 cut(s) 270
SduI GDGCHC 1 cut(s) 207
SfcI CTRYAG 1 cut(s) 22
SfuI TTCGAA 1 cut(s) 559
SinI GGWCC 1 cut(s) 430
SmiMI CAYNNNNRTG 1 cut(s) 425
SmlI CTYRAG 3 cut(s) 434, 461, 580
SmoI CTYRAG 3 cut(s) 434, 461, 580
Sse9I AATT 3 cut(s) 12, 27, 329
SsiI CCGC 1 cut(s) 659
SspI AATATT 1 cut(s) 230
StyD4I CCNGG 1 cut(s) 268
StyI CCWWGG 3 cut(s) 210, 426, 743
TaaI ACNGT 2 cut(s) 187, 652
TaiI ACGT 2 cut(s) 493, 576
TaqI TCGA 3 cut(s) 559, 647, 665
TasI AATT 3 cut(s) 12, 27, 329
TatI WGTACW 1 cut(s) 726
TfiI GAWTC 4 cut(s) 177, 310, 662, 763
Tru1I TTAA 6 cut(s) 161, 255, 291, 371, 581, 794
Tru9I TTAA 6 cut(s) 161, 255, 291, 371, 581, 794
TseFI GTSAC 1 cut(s) 491
TseI GCWGC 1 cut(s) 88
Tsp45I GTSAC 1 cut(s) 491
TspDTI ATGAA 5 cut(s) 167, 207, 255, 328, 577
TspGWI ACGGA 1 cut(s) 721
Vha464I CTTAAG 1 cut(s) 580
VpaK11BI GGWCC 1 cut(s) 430
XapI RAATTY 1 cut(s) 27
ZrmI AGTACT 1 cut(s) 728
Zsp2I ATGCAT 1 cut(s) 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.