Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003399

Physical Location & Seq

Genomic Coordinates Reverse (-)

24840254 .. 24841899

Gene Structure 1646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G263500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGGTGAGGTTGCTGCTGCTGGTCTTTTTTCTGTATGGCATTGCCAACCCTTGTTCTGTCCTCGTAGAAGCATGCGTGCCGGAGCAGAAAATTTGAAGGGTAAGCTGATGAAGAAGCAGGACAGGCTTTGCCATGTAAAGGCCTTGTTTAATCCAAGTCTGCCAAAGAAAAAGGAGCCTTTAACCTTCTACTTTAGACATACTATTGATGCCCCTCTCTATGAGTCCCCTAGGGCTCCATTTTATCAATATTTGGAGGATGAGCAAAGGGTTTTTAAAGCAATTTTTCAGGACGAGGAAAAAACTCAACTCAATGAGGAAGAGTGGAGAATTCAAATGCCAGCCATGCAAGTCTTGTTCTTGTCTATCTACCTTATACTATATGTAAAGTTAAGAATGAAATCGATGGGGAAAGACTACCCTTCTCATGTTCCTCAAGACATTTCCAAGGTTCTTGAGATTGACATTACAAGATGGGAGCTCCTAGGCCCTTCAGATTACGAGCCAGGGGATTTTAGCCTCACTATCAAAGGAACCATATACTCTGAAAGACAAGGAGCACAAAGCTGGCTTAGAAACATATTTGATATCAACATAAGCTTCATTGTTTCACCTCTGCTTGCTTGGGTGCCGGATGATGTTATGCGAAACATTACAAAAACGCTTGTGAAGACGACGATGGACGATGTGAAAGTAAATGCCAGGCTGCTAGCAGATTATGACAAATTCAAAACAGAGAAGCTCAAGAATGTGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1997

Protein Analysis

253

Amino Acids

29.4

Weight (kDa)

8.79

Isoelectric Point (pI)

50.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39520 AT5G39530 AT5G39530
fragaria_vesca	FvH4_6g48000 FvH4_6g48001
malus_domestica	MD09G1055000.v1.1 MD09G1055400.v1.1 MD17G1053100.v1.1
prunus_persica	Prupe.3G263500_v2.0.a1
pyrus_communis	pycom111g04640
rosa_chinensis	RchiOBHm_Chr2g0167241 RchiOBHm_Chr2g0167251 RchiOBHm_Chr2g0167291
rosa_laevigata	RLG00000021702 RLG00000021703
rosa_multiflora	Rmu_sc0015771.1_g000011 Rmu_sc0030724.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083640 Rroxscaffold_2G00083650 Rroxscaffold_2G00083660
rosa_rugosa	Rorug02G0529200 Rorug02G0529200 Rorug02G0529300
rosa_samantha	Rh2AG596200 Rh2BG607200 Rh2BG607300 Rh2BG607500 Rh2CG578200 Rh2CG578300 Rh2DG618800 Rh2DG618900 Rh2DG619000
rosa_wichuraiana	Rw0G018240 Rw0G018250 Rw2G049610 Rw2G049620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	628
AcsI	RAATTY	3 cut(s)	91, 330, 725
AcuI	CTGAAG	1 cut(s)	477
AfiI	CCNNNNNNNGG	1 cut(s)	139
AgsI	TTSAA	3 cut(s)	97, 335, 730
AjnI	CCWGG	2 cut(s)	505, 701
AluBI	AGCT	5 cut(s)	106, 481, 567, 600, 742
AluI	AGCT	5 cut(s)	106, 481, 567, 600, 742
Alw21I	GWGCWC	2 cut(s)	483, 562
AoxI	GGCC	2 cut(s)	141, 487
ApeKI	GCWGC	3 cut(s)	14, 17, 706
ApoI	RAATTY	3 cut(s)	91, 330, 725
AspA2I	CCTAGG	2 cut(s)	230, 484
AspS9I	GGNCC	1 cut(s)	488
AsuHPI	GGTGA	2 cut(s)	17, 603
AsuNHI	GCTAGC	1 cut(s)	709
AvrII	CCTAGG	2 cut(s)	230, 484
BanI	GGYRCC	1 cut(s)	628
BanII	GRGCYC	2 cut(s)	238, 483
BbsI	GAAGAC	1 cut(s)	677
Bbv12I	GWGCWC	2 cut(s)	483, 562
BbvI	GCAGC	2 cut(s)	4, 693
BccI	CCATC	3 cut(s)	400, 468, 673
BciT130I	CCWGG	2 cut(s)	507, 703
BfaI	CTAG	3 cut(s)	231, 485, 710
BisI	GCNGC	3 cut(s)	15, 18, 707
BlnI	CCTAGG	2 cut(s)	230, 484
BlsI	GCNGC	3 cut(s)	16, 19, 708
Bme1390I	CCNGG	2 cut(s)	507, 703
BmgT120I	GGNCC	1 cut(s)	488
BmiI	GGNNCC	4 cut(s)	177, 237, 535, 630
BmrFI	CCNGG	2 cut(s)	507, 703
BmsI	GCATC	1 cut(s)	199
BmtI	GCTAGC	1 cut(s)	713
BpiI	GAAGAC	1 cut(s)	677
BpuEI	CTTGAG	3 cut(s)	420, 476, 728
Bsa29I	ATCGAT	1 cut(s)	404
BsaJI	CCNNGG	4 cut(s)	230, 447, 484, 506
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
Bse3DI	GCAATG	1 cut(s)	40
BseBI	CCWGG	2 cut(s)	507, 703
BseCI	ATCGAT	1 cut(s)	404
BseDI	CCNNGG	4 cut(s)	230, 447, 484, 506
BseGI	GGATG	2 cut(s)	265, 640
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseMI	GCAATG	1 cut(s)	40
BseXI	GCAGC	2 cut(s)	4, 693
BshFI	GGCC	2 cut(s)	143, 489
BshNI	GGYRCC	1 cut(s)	628
BshVI	ATCGAT	1 cut(s)	404
BsiHKAI	GWGCWC	2 cut(s)	483, 562
BsiSI	CCGG	2 cut(s)	81, 632
BslFI	GGGAC	1 cut(s)	211
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	211
BsnI	GGCC	2 cut(s)	143, 489
Bsp1286I	GDGCHC	3 cut(s)	238, 483, 562
BspANI	GGCC	2 cut(s)	143, 489
BspDI	ATCGAT	1 cut(s)	404
BspLI	GGNNCC	4 cut(s)	177, 237, 535, 630
BspOI	GCTAGC	1 cut(s)	713
BspT107I	GGYRCC	1 cut(s)	628
BsrDI	GCAATG	1 cut(s)	40
BssECI	CCNNGG	4 cut(s)	230, 447, 484, 506
BssT1I	CCWWGG	3 cut(s)	230, 447, 484
Bst2UI	CCWGG	2 cut(s)	507, 703
Bst6I	CTCTTC	1 cut(s)	315
BstC8I	GCNNGC	6 cut(s)	74, 78, 342, 569, 621, 711
BstDEI	CTNAG	1 cut(s)	572
BstF5I	GGATG	2 cut(s)	265, 640
BstMWI	GCNNNNNNNGC	2 cut(s)	124, 346
BstNI	CCWGG	2 cut(s)	507, 703
BstNSI	RCATGY	1 cut(s)	76
BstSCI	CCNGG	2 cut(s)	505, 701
BstV1I	GCAGC	2 cut(s)	4, 693
BstV2I	GAAGAC	1 cut(s)	677
Bsu15I	ATCGAT	1 cut(s)	404
BsuRI	GGCC	2 cut(s)	143, 489
BsuTUI	ATCGAT	1 cut(s)	404
BtsCI	GGATG	2 cut(s)	265, 640
Cac8I	GCNNGC	6 cut(s)	74, 78, 342, 569, 621, 711
Cfr13I	GGNCC	1 cut(s)	488
ClaI	ATCGAT	1 cut(s)	404
CviAII	CATG	4 cut(s)	73, 134, 346, 428
DdeI	CTNAG	1 cut(s)	572
DraI	TTTAAA	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
Ecl136II	GAGCTC	1 cut(s)	481
Eco130I	CCWWGG	3 cut(s)	230, 447, 484
Eco147I	AGGCCT	1 cut(s)	143
Eco24I	GRGCYC	2 cut(s)	238, 483
Eco32I	GATATC	1 cut(s)	589
Eco53kI	GAGCTC	1 cut(s)	481
Eco57I	CTGAAG	1 cut(s)	477
EcoICRI	GAGCTC	1 cut(s)	481
EcoO109I	RGGNCCY	1 cut(s)	488
EcoRI	GAATTC	1 cut(s)	330
EcoRII	CCWGG	2 cut(s)	505, 701
EcoRV	GATATC	1 cut(s)	589
EcoT14I	CCWWGG	3 cut(s)	230, 447, 484
EcoT38I	GRGCYC	2 cut(s)	238, 483
ErhI	CCWWGG	3 cut(s)	230, 447, 484
FaeI	CATG	4 cut(s)	76, 137, 349, 431
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	4 cut(s)	72, 133, 345, 427
Fnu4HI	GCNGC	3 cut(s)	15, 18, 707
FokI	GGATG	2 cut(s)	272, 647
FriOI	GRGCYC	2 cut(s)	238, 483
Fsp4HI	GCNGC	3 cut(s)	15, 18, 707
FspBI	CTAG	3 cut(s)	231, 485, 710
GluI	GCNGC	3 cut(s)	15, 18, 707
HaeIII	GGCC	2 cut(s)	143, 489
HapII	CCGG	2 cut(s)	81, 632
Hin1II	CATG	4 cut(s)	76, 137, 349, 431
HindIII	AAGCTT	1 cut(s)	598
HinfI	GANTC	1 cut(s)	224
HpaII	CCGG	2 cut(s)	81, 632
HphI	GGTGA	2 cut(s)	17, 603
Hpy188I	TCNGA	2 cut(s)	496, 547
Hpy188III	TCNNGA	4 cut(s)	290, 437, 455, 745
Hpy99I	CGWCG	1 cut(s)	679
HpyAV	CCTTC	4 cut(s)	91, 196, 432, 501
HpyCH4V	TGCA	1 cut(s)	349
HpyF10VI	GCNNNNNNNGC	2 cut(s)	124, 346
HpyF3I	CTNAG	1 cut(s)	572
Hsp92II	CATG	4 cut(s)	76, 137, 349, 431
LmnI	GCTCC	6 cut(s)	83, 175, 241, 478, 486, 557
Lsp1109I	GCAGC	2 cut(s)	4, 693
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	3 cut(s)	231, 485, 710
MboII	GAAGA	3 cut(s)	124, 332, 682
MhlI	GDGCHC	3 cut(s)	238, 483, 562
MluCI	AATT	4 cut(s)	91, 282, 330, 725
MlyI	GAGTC	1 cut(s)	233
MnlI	CCTC	8 cut(s)	72, 225, 250, 289, 310, 444, 530, 624
MseI	TTAA	4 cut(s)	150, 182, 276, 392
MspI	CCGG	2 cut(s)	81, 632
MspR9I	CCNGG	2 cut(s)	507, 703
MvaI	CCWGG	2 cut(s)	507, 703
MwoI	GCNNNNNNNGC	2 cut(s)	124, 346
NheI	GCTAGC	1 cut(s)	709
NlaIII	CATG	4 cut(s)	76, 137, 349, 431
NlaIV	GGNNCC	4 cut(s)	177, 237, 535, 630
NspI	RCATGY	1 cut(s)	76
PaeI	GCATGC	1 cut(s)	76
PceI	AGGCCT	1 cut(s)	143
PkrI	GCNGC	3 cut(s)	16, 19, 708
PleI	GAGTC	1 cut(s)	232
PpsI	GAGTC	1 cut(s)	232
Psp124BI	GAGCTC	1 cut(s)	483
Psp6I	CCWGG	2 cut(s)	505, 701
PspGI	CCWGG	2 cut(s)	505, 701
PspN4I	GGNNCC	4 cut(s)	177, 237, 535, 630
PspPI	GGNCC	1 cut(s)	488
SacI	GAGCTC	1 cut(s)	483
SaqAI	TTAA	4 cut(s)	150, 182, 276, 392
SatI	GCNGC	3 cut(s)	15, 18, 707
Sau96I	GGNCC	1 cut(s)	488
SchI	GAGTC	1 cut(s)	233
ScrFI	CCNGG	2 cut(s)	507, 703
SduI	GDGCHC	3 cut(s)	238, 483, 562
SfaNI	GCATC	1 cut(s)	199
SmlI	CTYRAG	3 cut(s)	435, 455, 743
SmoI	CTYRAG	3 cut(s)	435, 455, 743
SphI	GCATGC	1 cut(s)	76
Sse9I	AATT	4 cut(s)	91, 282, 330, 725
SseBI	AGGCCT	1 cut(s)	143
SspI	AATATT	1 cut(s)	251
SspMI	CTAG	3 cut(s)	231, 485, 710
SstI	GAGCTC	1 cut(s)	483
StuI	AGGCCT	1 cut(s)	143
StyD4I	CCNGG	2 cut(s)	505, 701
StyI	CCWWGG	3 cut(s)	230, 447, 484
TaqI	TCGA	1 cut(s)	404
TasI	AATT	4 cut(s)	91, 282, 330, 725
Tru1I	TTAA	4 cut(s)	150, 182, 276, 392
Tru9I	TTAA	4 cut(s)	150, 182, 276, 392
TseI	GCWGC	3 cut(s)	14, 17, 706
TspDTI	ATGAA	3 cut(s)	125, 413, 592
XapI	RAATTY	3 cut(s)	91, 330, 725
XceI	RCATGY	1 cut(s)	76
XmaJI	CCTAGG	2 cut(s)	230, 484
XspI	CTAG	3 cut(s)	231, 485, 710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.