Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003399

Physical Location & Seq

Genomic Coordinates Forward (+)

4146927 .. 4147700

Gene Structure 774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1053100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGCGTTTCAGGCTGGAGAATTTGAAGGGTAAGCCGATCAGGAAGCAGGAGAGGATTTGCCACGCCGAAGCGGTGTTAAAATCAAAGAAGACGAAGCACAGGGAGCCTTTAACCTTCTACTTTAGATATACAATTGATGCTCCTTTCAATGAATCTCCTGCGGAAGAGTGGAGAATTCACACGCCGGCCATGCAAGTCTTGTTCCTGTCTGTCTACCTTGCATTATACGTCAAGTTGAGATGCAAATCCATGAGCTTGACATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1997

Protein Analysis

89

Amino Acids

10.51

Weight (kDa)

9.95

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39520 AT5G39530 AT5G39530
fragaria_vesca	FvH4_6g48000 FvH4_6g48001
malus_domestica	MD09G1055000.v1.1 MD09G1055400.v1.1 MD17G1053100.v1.1
prunus_persica	Prupe.3G263500_v2.0.a1
pyrus_communis	pycom111g04640
rosa_chinensis	RchiOBHm_Chr2g0167241 RchiOBHm_Chr2g0167251 RchiOBHm_Chr2g0167291
rosa_laevigata	RLG00000021702 RLG00000021703
rosa_multiflora	Rmu_sc0015771.1_g000011 Rmu_sc0030724.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083640 Rroxscaffold_2G00083650 Rroxscaffold_2G00083660
rosa_rugosa	Rorug02G0529200 Rorug02G0529200 Rorug02G0529300
rosa_samantha	Rh2AG596200 Rh2BG607200 Rh2BG607300 Rh2BG607500 Rh2CG578200 Rh2CG578300 Rh2DG618800 Rh2DG618900 Rh2DG619000
rosa_wichuraiana	Rw0G018240 Rw0G018250 Rw2G049610 Rw2G049620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	213
AciI	CCGC	2 cut(s)	71, 161
AcoI	YGGCCR	1 cut(s)	186
AcsI	RAATTY	2 cut(s)	19, 174
AgsI	TTSAA	2 cut(s)	25, 148
AluBI	AGCT	1 cut(s)	255
AluI	AGCT	1 cut(s)	255
AoxI	GGCC	1 cut(s)	186
ApoI	RAATTY	2 cut(s)	19, 174
BbsI	GAAGAC	1 cut(s)	95
BmiI	GGNNCC	1 cut(s)	105
BmsI	GCATC	2 cut(s)	127, 230
BpiI	GAAGAC	1 cut(s)	95
BpmI	CTGGAG	1 cut(s)	35
BsaBI	GATNNNNATC	1 cut(s)	244
Bse118I	RCCGGY	1 cut(s)	184
Bse8I	GATNNNNATC	1 cut(s)	244
BseJI	GATNNNNATC	1 cut(s)	244
BshFI	GGCC	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	185
BsnI	GGCC	1 cut(s)	188
Bsp143I	GATC	1 cut(s)	36
BspACI	CCGC	2 cut(s)	71, 161
BspANI	GGCC	1 cut(s)	188
BspLI	GGNNCC	1 cut(s)	105
BsrFI	RCCGGY	1 cut(s)	184
BssAI	RCCGGY	1 cut(s)	184
BssMI	GATC	1 cut(s)	36
Bst6I	CTCTTC	1 cut(s)	159
BstC8I	GCNNGC	1 cut(s)	186
BstKTI	GATC	1 cut(s)	39
BstMBI	GATC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 103, 190
BstV2I	GAAGAC	1 cut(s)	95
BsuRI	GGCC	1 cut(s)	188
Cac8I	GCNNGC	1 cut(s)	186
Cfr10I	RCCGGY	1 cut(s)	184
CviAII	CATG	2 cut(s)	190, 250
CviJI	RGCY	5 cut(s)	13, 34, 106, 188, 255
CviKI_1	RGCY	5 cut(s)	13, 34, 106, 188, 255
DpnI	GATC	1 cut(s)	38
DpnII	GATC	1 cut(s)	36
EaeI	YGGCCR	1 cut(s)	186
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
EcoRI	GAATTC	1 cut(s)	174
FaeI	CATG	2 cut(s)	193, 253
FaiI	YATR	4 cut(s)	129, 191, 226, 251
FatI	CATG	2 cut(s)	189, 249
FblI	GTMKAC	1 cut(s)	213
GsuI	CTGGAG	1 cut(s)	35
HaeIII	GGCC	1 cut(s)	188
HapII	CCGG	1 cut(s)	185
Hin1II	CATG	2 cut(s)	193, 253
HinfI	GANTC	1 cut(s)	152
HpaII	CCGG	1 cut(s)	185
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188III	TCNNGA	1 cut(s)	40
Hpy8I	GTNNAC	1 cut(s)	214
HpyAV	CCTTC	2 cut(s)	19, 124
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	3 cut(s)	193, 221, 243
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 103, 190
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	2 cut(s)	193, 253
KroI	GCCGGC	1 cut(s)	184
KroNI	GCCGGC	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	36
LmnI	GCTCC	2 cut(s)	103, 145
LpnPI	CCDG	6 cut(s)	25, 32, 85, 171, 198, 218
LweI	GCATC	2 cut(s)	127, 230
MaeII	ACGT	1 cut(s)	228
MalI	GATC	1 cut(s)	38
MboI	GATC	1 cut(s)	36
MboII	GAAGA	2 cut(s)	100, 176
MfeI	CAATTG	1 cut(s)	132
MluCI	AATT	3 cut(s)	19, 132, 174
MnlI	CCTC	1 cut(s)	45
MroNI	GCCGGC	1 cut(s)	184
MseI	TTAA	2 cut(s)	77, 110
MspI	CCGG	1 cut(s)	185
MunI	CAATTG	1 cut(s)	132
MwoI	GCNNNNNNNGC	3 cut(s)	10, 103, 190
NaeI	GCCGGC	1 cut(s)	186
NdeII	GATC	1 cut(s)	36
NgoMIV	GCCGGC	1 cut(s)	184
NlaIII	CATG	2 cut(s)	193, 253
NlaIV	GGNNCC	1 cut(s)	105
PdiI	GCCGGC	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	152
PspN4I	GGNNCC	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	77, 110
Sau3AI	GATC	1 cut(s)	36
SetI	ASST	4 cut(s)	116, 219, 231, 257
SfaNI	GCATC	2 cut(s)	127, 230
Sse9I	AATT	3 cut(s)	19, 132, 174
SsiI	CCGC	2 cut(s)	71, 161
TaiI	ACGT	1 cut(s)	231
TasI	AATT	3 cut(s)	19, 132, 174
TfiI	GAWTC	1 cut(s)	152
Tru1I	TTAA	2 cut(s)	77, 110
Tru9I	TTAA	2 cut(s)	77, 110
TspDTI	ATGAA	1 cut(s)	165
XapI	RAATTY	2 cut(s)	19, 174
XmiI	GTMKAC	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.