Rroxscaffold_2G00083640

Protein of unknown function (DUF1997)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0003399
Physical Location & Seq
Forward (+)
6316503 .. 6317813
1311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00083640.1

Sequence Viewer

Length: 651 bp
ATGGTTGGGGTAGTTGCTTTACGCCAACCCTTGTTTATTCTTGGTACTAGTCTGCCTTTTCCAGAAAAATTGAAGGTGAAGGTGAAGCTGAAGAAGGGCAGACGGCGCCACTATGCGAAAGCGGTATGGAACTCAGATCATACGAAGCCTTTAACCGTGAACCTCAGTTCCACTATTGATGCACCTCTGTTTGAGTCCCCTGAGGAAGAGTGGAGGATTCAAATCCCAACCATGCAAGTCTTGTTCCTGTCTATCTACTTTGCAATGTACATCAAGTTAAGATTCAAATCCATGGGGAAAGACTATCCTCCTCATGTTCCTCATCACATCCCCAAAATCACTGAGCTTGAAATTACAAGATGGGAACTTGGGGGCATCCCTGAGGAGTACCAGCCGCGTGACTTGAGCCTCTCCCTCAAAGGAACCATATATCCTGATAGAAAGCAAGGAACACAAAGCAGGCTTAGAAGCCAGTTTGACCTAAACATGAGCTTTATTTTATCACCTCTGCTCGGTTGGATTCCTCATACTGTCGTGCAGAGCCTTGCAGAAGCGCTGGTTAAGAAAGCGATGGCGGATTCGACCTCAAATTCCAGATTGGTAGAAGACTATGATGAATTCAAGACGGAGAAACTCAAGAATGTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1997

Protein Analysis

216

Amino Acids

24.89

Weight (kDa)

9.56

Isoelectric Point (pI)

57.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1997 PF09366 68 - 207 1.3e-15 Protein of unknown function (DUF1997)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 105
AccII CGCG 1 cut(s) 397
AciI CCGC 3 cut(s) 122, 395, 575
AcsI RAATTY 2 cut(s) 589, 617
AcuI CTGAAG 1 cut(s) 110
AcyI GRCGYC 1 cut(s) 106
AfaI GTAC 3 cut(s) 46, 269, 389
AfeI AGCGCT 1 cut(s) 555
AfiI CCNNNNNNNGG 1 cut(s) 512
AgsI TTSAA 5 cut(s) 73, 221, 286, 350, 622
AhlI ACTAGT 1 cut(s) 47
AloI GAACNNNNNNTCC 4 cut(s) 152, 184, 415, 447
AluBI AGCT 3 cut(s) 88, 346, 492
AluI AGCT 3 cut(s) 88, 346, 492
Aor51HI AGCGCT 1 cut(s) 555
ApoI RAATTY 2 cut(s) 589, 617
AspLEI GCGC 2 cut(s) 108, 556
AsuHPI GGTGA 3 cut(s) 88, 94, 495
AxyI CCTNAGG 2 cut(s) 201, 381
BanI GGYRCC 1 cut(s) 105
BbsI GAAGAC 1 cut(s) 612
BccI CCATC 2 cut(s) 354, 565
BceAI ACGGC 1 cut(s) 119
BcuI ACTAGT 1 cut(s) 47
BfaI CTAG 1 cut(s) 48
BfoI RGCGCY 2 cut(s) 109, 557
BisI GCNGC 1 cut(s) 395
BlsI GCNGC 1 cut(s) 396
BmiI GGNNCC 2 cut(s) 107, 424
BmsI GCATC 2 cut(s) 169, 384
BpiI GAAGAC 1 cut(s) 612
BpuEI CTTGAG 2 cut(s) 424, 620
BsaBI GATNNNNATC 2 cut(s) 221, 286
BsaHI GRCGYC 1 cut(s) 106
BsaJI CCNNGG 1 cut(s) 291
Bsc4I CCNNNNNNNGG 1 cut(s) 512
Bse1I ACTGG 1 cut(s) 472
Bse21I CCTNAGG 2 cut(s) 201, 381
Bse3DI GCAATG 1 cut(s) 270
Bse8I GATNNNNATC 2 cut(s) 221, 286
BseDI CCNNGG 1 cut(s) 291
BseGI GGATG 2 cut(s) 327, 375
BseJI GATNNNNATC 2 cut(s) 221, 286
BseLI CCNNNNNNNGG 1 cut(s) 512
BseMI GCAATG 1 cut(s) 270
BseMII CTCAG 5 cut(s) 147, 178, 192, 333, 372
BseNI ACTGG 1 cut(s) 472
BseRI GAGGAG 2 cut(s) 300, 398
BsgI GTGCAG 1 cut(s) 557
Bsh1236I CGCG 1 cut(s) 397
BshNI GGYRCC 1 cut(s) 105
BslFI GGGAC 1 cut(s) 181
BslI CCNNNNNNNGG 1 cut(s) 512
BsmFI GGGAC 1 cut(s) 181
Bsp1407I TGTACA 1 cut(s) 267
Bsp143I GATC 1 cut(s) 136
Bsp19I CCATGG 1 cut(s) 291
BspACI CCGC 3 cut(s) 122, 395, 575
BspCNI CTCAG 5 cut(s) 146, 177, 193, 334, 373
BspFNI CGCG 1 cut(s) 397
BspLI GGNNCC 2 cut(s) 107, 424
BspT107I GGYRCC 1 cut(s) 105
BsrDI GCAATG 1 cut(s) 270
BsrGI TGTACA 1 cut(s) 267
BsrI ACTGG 1 cut(s) 472
BssECI CCNNGG 1 cut(s) 291
BssMI GATC 1 cut(s) 136
BssNI GRCGYC 1 cut(s) 106
BssT1I CCWWGG 1 cut(s) 291
Bst4CI ACNGT 2 cut(s) 157, 532
Bst6I CTCTTC 1 cut(s) 201
BstACI GRCGYC 1 cut(s) 106
BstAUI TGTACA 1 cut(s) 267
BstC8I GCNNGC 1 cut(s) 461
BstDEI CTNAG 6 cut(s) 133, 164, 201, 342, 381, 464
BstDSI CCRYGG 1 cut(s) 291
BstF5I GGATG 2 cut(s) 327, 375
BstFNI CGCG 1 cut(s) 397
BstH2I RGCGCY 2 cut(s) 109, 557
BstHHI GCGC 2 cut(s) 108, 556
BstKTI GATC 1 cut(s) 139
BstMBI GATC 1 cut(s) 136
BstMWI GCNNNNNNNGC 1 cut(s) 105
BstUI CGCG 1 cut(s) 397
BstV2I GAAGAC 1 cut(s) 612
Bsu36I CCTNAGG 2 cut(s) 201, 381
BtgI CCRYGG 1 cut(s) 291
BtgZI GCGATG 1 cut(s) 584
BtsCI GGATG 2 cut(s) 327, 375
BtsIMutI CAGTG 1 cut(s) 339
Cac8I GCNNGC 1 cut(s) 461
CfoI GCGC 2 cut(s) 108, 556
Csp6I GTAC 3 cut(s) 45, 268, 388
CviAII CATG 4 cut(s) 232, 292, 314, 487
CviJI RGCY 9 cut(s) 88, 148, 346, 394, 408, 463, 471, 492, 543
CviKI_1 RGCY 9 cut(s) 88, 148, 346, 394, 408, 463, 471, 492, 543
CviQI GTAC 3 cut(s) 45, 268, 388
DdeI CTNAG 6 cut(s) 133, 164, 201, 342, 381, 464
DinI GGCGCC 1 cut(s) 107
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
EciI GGCGGA 1 cut(s) 590
Eco130I CCWWGG 1 cut(s) 291
Eco47III AGCGCT 1 cut(s) 555
Eco57I CTGAAG 1 cut(s) 110
Eco81I CCTNAGG 2 cut(s) 201, 381
EcoRI GAATTC 1 cut(s) 617
EcoT14I CCWWGG 1 cut(s) 291
EgeI GGCGCC 1 cut(s) 107
EheI GGCGCC 1 cut(s) 107
ErhI CCWWGG 1 cut(s) 291
FaeI CATG 4 cut(s) 235, 295, 317, 490
FaqI GGGAC 1 cut(s) 181
FatI CATG 4 cut(s) 231, 291, 313, 486
Fnu4HI GCNGC 1 cut(s) 395
FokI GGATG 2 cut(s) 314, 362
Fsp4HI GCNGC 1 cut(s) 395
FspBI CTAG 1 cut(s) 48
GlaI GCGC 2 cut(s) 107, 555
GluI GCNGC 1 cut(s) 395
HaeII RGCGCY 2 cut(s) 109, 557
HhaI GCGC 2 cut(s) 108, 556
Hin1I GRCGYC 1 cut(s) 106
Hin1II CATG 4 cut(s) 235, 295, 317, 490
Hin6I GCGC 2 cut(s) 106, 554
HinP1I GCGC 2 cut(s) 106, 554
HinfI GANTC 5 cut(s) 194, 217, 282, 520, 578
HphI GGTGA 3 cut(s) 88, 94, 495
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 5 cut(s) 62, 434, 594, 622, 637
Hpy8I GTNNAC 1 cut(s) 160
HpyAV CCTTC 3 cut(s) 67, 73, 88
HpyCH4III ACNGT 2 cut(s) 157, 532
HpyCH4V TGCA 5 cut(s) 182, 235, 263, 538, 548
HpyF10VI GCNNNNNNNGC 1 cut(s) 105
HpyF3I CTNAG 6 cut(s) 133, 164, 201, 342, 381, 464
Hsp92I GRCGYC 1 cut(s) 106
Hsp92II CATG 4 cut(s) 235, 295, 317, 490
HspAI GCGC 2 cut(s) 106, 554
KasI GGCGCC 1 cut(s) 105
Kzo9I GATC 1 cut(s) 136
LweI GCATC 2 cut(s) 169, 384
MaeI CTAG 1 cut(s) 48
MaeIII GTNAC 1 cut(s) 398
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 3 cut(s) 103, 218, 617
MluCI AATT 4 cut(s) 68, 351, 589, 617
Mly113I GGCGCC 1 cut(s) 106
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 1 cut(s) 497
MseI TTAA 3 cut(s) 152, 278, 561
MvnI CGCG 1 cut(s) 397
MwoI GCNNNNNNNGC 1 cut(s) 105
NarI GGCGCC 1 cut(s) 106
NcoI CCATGG 1 cut(s) 291
NdeII GATC 1 cut(s) 136
NlaIII CATG 4 cut(s) 235, 295, 317, 490
NlaIV GGNNCC 2 cut(s) 107, 424
NmuCI GTSAC 1 cut(s) 398
PfeI GAWTC 4 cut(s) 217, 282, 520, 578
PkrI GCNGC 1 cut(s) 396
PleI GAGTC 1 cut(s) 202
PluTI GGCGCC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 202
PspN4I GGNNCC 2 cut(s) 107, 424
RsaI GTAC 3 cut(s) 46, 269, 389
RsaNI GTAC 3 cut(s) 45, 268, 388
SaqAI TTAA 3 cut(s) 152, 278, 561
SatI GCNGC 1 cut(s) 395
Sau3AI GATC 1 cut(s) 136
SchI GAGTC 1 cut(s) 203
SfaNI GCATC 2 cut(s) 169, 384
SfoI GGCGCC 1 cut(s) 107
SmlI CTYRAG 2 cut(s) 403, 635
SmoI CTYRAG 2 cut(s) 403, 635
SpeI ACTAGT 1 cut(s) 47
Sse9I AATT 4 cut(s) 68, 351, 589, 617
SsiI CCGC 3 cut(s) 122, 395, 575
SspDI GGCGCC 1 cut(s) 105
SspMI CTAG 1 cut(s) 48
StyI CCWWGG 1 cut(s) 291
TaaI ACNGT 2 cut(s) 157, 532
TaqI TCGA 1 cut(s) 581
TasI AATT 4 cut(s) 68, 351, 589, 617
TatI WGTACW 1 cut(s) 267
TauI GCSGC 1 cut(s) 397
TfiI GAWTC 4 cut(s) 217, 282, 520, 578
Tru1I TTAA 3 cut(s) 152, 278, 561
Tru9I TTAA 3 cut(s) 152, 278, 561
TscAI CASTG 1 cut(s) 346
TseFI GTSAC 1 cut(s) 398
Tsp45I GTSAC 1 cut(s) 398
TspDTI ATGAA 1 cut(s) 630
TspGWI ACGGA 1 cut(s) 641
TspRI CASTG 1 cut(s) 346
XapI RAATTY 2 cut(s) 589, 617
XspI CTAG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.