Rmu_sc0030724.1_g000001

Protein of unknown function (DUF1997)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0030724.1
OG0003399
Physical Location & Seq
Reverse (-)
1 .. 770
770 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0030724.1_g000001.1.cds

Sequence Viewer

Length: 432 bp
atggttggggcagttgctttatgccaaccgttgtttattcttggtactagtctgccttttccagaaaaattgaaggtgaagctgaagaagggcagacagcgccactatgcgaaagcggtatggaactcagatcataagaagccttttaccgtgaacctcagttccactattgatgcacctctgtatgagtcccctgaggtttcatttgatcaatatttggagcatgagcaaagggttattaaagcactttttccagacatggaggaccagcaaattagcaaggaagagtggaggattcaaatcccaaccatgcaagtcttgttcctgtctatctactttgcaatgtacatcaagttaagattcaaatccatggggaaagactaccctcctcatgttcctcagcacatcgccaaaatcactgagcttgaaatt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1997

Protein Analysis

144

Amino Acids

16.81

Weight (kDa)

8.93

Isoelectric Point (pI)

44.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 116
AcuI CTGAAG 1 cut(s) 104
AfaI GTAC 2 cut(s) 46, 347
AgsI TTSAA 4 cut(s) 73, 299, 364, 428
AhlI ACTAGT 1 cut(s) 47
AloI GAACNNNNNNTCC 2 cut(s) 146, 178
AluBI AGCT 2 cut(s) 82, 424
AluI AGCT 2 cut(s) 82, 424
AspLEI GCGC 1 cut(s) 102
AspS9I GGNCC 1 cut(s) 265
AsuHPI GGTGA 1 cut(s) 88
AvaII GGWCC 1 cut(s) 265
AxyI CCTNAGG 1 cut(s) 195
BbvCI CCTCAGC 1 cut(s) 399
BclI TGATCA 1 cut(s) 208
BcuI ACTAGT 1 cut(s) 47
BfaI CTAG 1 cut(s) 48
BfoI RGCGCY 1 cut(s) 103
Bme18I GGWCC 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 265
BmsI GCATC 1 cut(s) 163
Bpu10I CCTNAGC 1 cut(s) 399
BsaBI GATNNNNATC 2 cut(s) 299, 364
BsaJI CCNNGG 1 cut(s) 369
Bse21I CCTNAGG 1 cut(s) 195
Bse3DI GCAATG 1 cut(s) 348
Bse8I GATNNNNATC 2 cut(s) 299, 364
BseDI CCNNGG 1 cut(s) 369
BseJI GATNNNNATC 2 cut(s) 299, 364
BseMI GCAATG 1 cut(s) 348
BseMII CTCAG 5 cut(s) 141, 172, 186, 411, 413
BseRI GAGGAG 1 cut(s) 378
BslFI GGGAC 1 cut(s) 175
BsmFI GGGAC 1 cut(s) 175
Bsp1407I TGTACA 1 cut(s) 345
Bsp143I GATC 2 cut(s) 130, 208
Bsp19I CCATGG 1 cut(s) 369
BspACI CCGC 1 cut(s) 116
BspCNI CTCAG 5 cut(s) 140, 171, 187, 412, 412
BsrDI GCAATG 1 cut(s) 348
BsrGI TGTACA 1 cut(s) 345
BssECI CCNNGG 1 cut(s) 369
BssMI GATC 2 cut(s) 130, 208
BssT1I CCWWGG 1 cut(s) 369
Bst4CI ACNGT 2 cut(s) 30, 151
Bst6I CTCTTC 1 cut(s) 279
BstAUI TGTACA 1 cut(s) 345
BstDEI CTNAG 5 cut(s) 127, 158, 195, 399, 420
BstDSI CCRYGG 1 cut(s) 369
BstH2I RGCGCY 1 cut(s) 103
BstHHI GCGC 1 cut(s) 102
BstKTI GATC 2 cut(s) 133, 211
BstMBI GATC 2 cut(s) 130, 208
BstMWI GCNNNNNNNGC 1 cut(s) 99
Bsu36I CCTNAGG 1 cut(s) 195
BtgI CCRYGG 1 cut(s) 369
BtgZI GCGATG 1 cut(s) 391
BtsIMutI CAGTG 1 cut(s) 417
CfoI GCGC 1 cut(s) 102
Cfr13I GGNCC 1 cut(s) 265
Csp6I GTAC 2 cut(s) 45, 346
CviAII CATG 5 cut(s) 224, 259, 310, 370, 392
CviJI RGCY 3 cut(s) 82, 142, 424
CviKI_1 RGCY 3 cut(s) 82, 142, 424
CviQI GTAC 2 cut(s) 45, 346
DdeI CTNAG 5 cut(s) 127, 158, 195, 399, 420
DpnI GATC 2 cut(s) 132, 210
DpnII GATC 2 cut(s) 130, 208
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Eco130I CCWWGG 1 cut(s) 369
Eco47I GGWCC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 104
Eco81I CCTNAGG 1 cut(s) 195
EcoT14I CCWWGG 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 369
FaeI CATG 5 cut(s) 227, 262, 313, 373, 395
FaqI GGGAC 1 cut(s) 175
FatI CATG 5 cut(s) 223, 258, 309, 369, 391
FbaI TGATCA 1 cut(s) 208
FspBI CTAG 1 cut(s) 48
GlaI GCGC 1 cut(s) 101
HaeII RGCGCY 1 cut(s) 103
HhaI GCGC 1 cut(s) 102
Hin1II CATG 5 cut(s) 227, 262, 313, 373, 395
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HinfI GANTC 3 cut(s) 188, 295, 360
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 2 cut(s) 62, 254
Hpy8I GTNNAC 1 cut(s) 154
HpyAV CCTTC 2 cut(s) 67, 82
HpyCH4III ACNGT 2 cut(s) 30, 151
HpyCH4V TGCA 3 cut(s) 176, 313, 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 99
HpyF3I CTNAG 5 cut(s) 127, 158, 195, 399, 420
Hsp92II CATG 5 cut(s) 227, 262, 313, 373, 395
HspAI GCGC 1 cut(s) 100
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 2 cut(s) 130, 208
LmnI GCTCC 1 cut(s) 220
LpnPI CCDG 5 cut(s) 75, 207, 267, 281, 338
LweI GCATC 1 cut(s) 163
MaeI CTAG 1 cut(s) 48
MalI GATC 2 cut(s) 132, 210
MboI GATC 2 cut(s) 130, 208
MboII GAAGA 2 cut(s) 97, 296
MluCI AATT 2 cut(s) 68, 273
MlyI GAGTC 1 cut(s) 197
MnlI CCTC 8 cut(s) 167, 189, 190, 256, 285, 396, 399, 408
MseI TTAA 2 cut(s) 240, 356
MwoI GCNNNNNNNGC 1 cut(s) 99
NcoI CCATGG 1 cut(s) 369
NdeII GATC 2 cut(s) 130, 208
NlaIII CATG 5 cut(s) 227, 262, 313, 373, 395
PfeI GAWTC 2 cut(s) 295, 360
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
PspPI GGNCC 1 cut(s) 265
RsaI GTAC 2 cut(s) 46, 347
RsaNI GTAC 2 cut(s) 45, 346
SaqAI TTAA 2 cut(s) 240, 356
Sau3AI GATC 2 cut(s) 130, 208
Sau96I GGNCC 1 cut(s) 265
SchI GAGTC 1 cut(s) 197
SetI ASST 6 cut(s) 78, 84, 159, 181, 201, 426
SfaNI GCATC 1 cut(s) 163
SinI GGWCC 1 cut(s) 265
SpeI ACTAGT 1 cut(s) 47
Sse9I AATT 2 cut(s) 68, 273
SsiI CCGC 1 cut(s) 116
SspI AATATT 1 cut(s) 215
SspMI CTAG 1 cut(s) 48
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 2 cut(s) 30, 151
TasI AATT 2 cut(s) 68, 273
TatI WGTACW 1 cut(s) 345
TfiI GAWTC 2 cut(s) 295, 360
Tru1I TTAA 2 cut(s) 240, 356
Tru9I TTAA 2 cut(s) 240, 356
TscAI CASTG 1 cut(s) 424
TspDTI ATGAA 1 cut(s) 192
TspRI CASTG 1 cut(s) 424
VpaK11BI GGWCC 1 cut(s) 265
XspI CTAG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.