Rh2BG607300

Protein of unknown function (DUF1997)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003399
Physical Location & Seq
Reverse (-)
82878790 .. 82879941
1152 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG607300.1

Sequence Viewer

Length: 732 bp
ATGGTTGAGGTAGTTGCTTTATGCCAACCCTTGCTTTTTCTTGGTACTGGTATGCCTTTTCGCCCAGAAAAATTGAAGGTGAAGCTGAAGAAGGGCAGACGGCGCCACTATGCAAAAGCGGTATTGAACTCAGATCATAAGAAGCCTTTAACCGTAAACCTCAGTTCCACTATTGATTCACCTCTTTATGAGTCCCCTGAGGTTTCATTTGATCAATATTTGGAGGATGAACAGAGGGTTATTAAAGCACTTTTCCCAGACATTGAGGACCAGCAACTTAGCAAGAAAGAGTGGAGGATTCAAATGCCAACCATGCAAGCCTTGTTCCTGTCTATCTACTTTGCAATGTACATTAAGTTAAGATACAAATCCATGGGGAAAGACTACCCTCCTCATGTTCCTCATCACATTCCCAAAATCATTGAGCTTGAAATTACAAGATGGGAACTTGGGGGGATCCCTGAGGAGTACCAGCCGCTTGACTTGAGCCTCTCCCTCAAAGGAACCATATATCCTGATAGAAAGCAAGGAACAAAAAGCAGGCTTAGAGGTCAGGTTGACATAAATATGAGCTTTATTGTATCACCTCTGCTTGGTTGGATTCCTCATACTGTCGTGCAGAGCCTTGCAGAATCGCTGGTTAAGAAAACGATGGCGGATTCGACATCAAGTTCCAGATTGGTACAAGACTATGATGAATTCAAGACCGAGAAACTCAAGAATGTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1997

Protein Analysis

243

Amino Acids

28.05

Weight (kDa)

9.19

Isoelectric Point (pI)

55.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1997 PF09366 70 - 234 4.3e-23 Protein of unknown function (DUF1997)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 102
AciI CCGC 3 cut(s) 119, 476, 656
AclWI GGATC 2 cut(s) 451, 464
AcsI RAATTY 1 cut(s) 698
AcuI CTGAAG 1 cut(s) 107
AcyI GRCGYC 1 cut(s) 103
AfaI GTAC 4 cut(s) 46, 350, 470, 684
AfiI CCNNNNNNNGG 1 cut(s) 593
AgsI TTSAA 5 cut(s) 76, 127, 302, 431, 703
AloI GAACNNNNNNTCC 2 cut(s) 496, 528
AluBI AGCT 3 cut(s) 85, 427, 573
AluI AGCT 3 cut(s) 85, 427, 573
AlwI GGATC 2 cut(s) 451, 464
ApoI RAATTY 1 cut(s) 698
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 268
AsuHPI GGTGA 3 cut(s) 91, 171, 576
AvaII GGWCC 1 cut(s) 268
AxyI CCTNAGG 2 cut(s) 198, 462
BamHI GGATCC 1 cut(s) 456
BanI GGYRCC 1 cut(s) 102
BccI CCATC 2 cut(s) 435, 646
BceAI ACGGC 1 cut(s) 116
BclI TGATCA 1 cut(s) 211
BfoI RGCGCY 1 cut(s) 106
BisI GCNGC 1 cut(s) 476
BlsI GCNGC 1 cut(s) 477
Bme18I GGWCC 1 cut(s) 268
BmgT120I GGNCC 1 cut(s) 268
BmiI GGNNCC 3 cut(s) 104, 458, 505
BpuEI CTTGAG 2 cut(s) 505, 701
BsaBI GATNNNNATC 1 cut(s) 367
BsaHI GRCGYC 1 cut(s) 103
BsaJI CCNNGG 1 cut(s) 372
Bsc4I CCNNNNNNNGG 1 cut(s) 593
Bse1I ACTGG 1 cut(s) 52
Bse21I CCTNAGG 2 cut(s) 198, 462
Bse3DI GCAATG 1 cut(s) 351
Bse8I GATNNNNATC 1 cut(s) 367
BseDI CCNNGG 1 cut(s) 372
BseGI GGATG 1 cut(s) 232
BseJI GATNNNNATC 1 cut(s) 367
BseLI CCNNNNNNNGG 1 cut(s) 593
BseMI GCAATG 1 cut(s) 351
BseMII CTCAG 4 cut(s) 144, 175, 189, 453
BseNI ACTGG 1 cut(s) 52
BseRI GAGGAG 2 cut(s) 381, 479
BsgI GTGCAG 1 cut(s) 638
BshNI GGYRCC 1 cut(s) 102
BslFI GGGAC 1 cut(s) 178
BslI CCNNNNNNNGG 1 cut(s) 593
BsmFI GGGAC 1 cut(s) 178
Bsp1407I TGTACA 1 cut(s) 348
Bsp143I GATC 3 cut(s) 133, 211, 456
Bsp19I CCATGG 1 cut(s) 372
BspACI CCGC 3 cut(s) 119, 476, 656
BspCNI CTCAG 4 cut(s) 143, 174, 190, 454
BspLI GGNNCC 3 cut(s) 104, 458, 505
BspPI GGATC 2 cut(s) 451, 464
BspT107I GGYRCC 1 cut(s) 102
BsrDI GCAATG 1 cut(s) 351
BsrGI TGTACA 1 cut(s) 348
BsrI ACTGG 1 cut(s) 52
BssECI CCNNGG 1 cut(s) 372
BssMI GATC 3 cut(s) 133, 211, 456
BssNI GRCGYC 1 cut(s) 103
BssT1I CCWWGG 1 cut(s) 372
Bst4CI ACNGT 2 cut(s) 154, 613
BstACI GRCGYC 1 cut(s) 103
BstAUI TGTACA 1 cut(s) 348
BstC8I GCNNGC 2 cut(s) 318, 542
BstDEI CTNAG 6 cut(s) 130, 161, 198, 278, 462, 545
BstDSI CCRYGG 1 cut(s) 372
BstF5I GGATG 1 cut(s) 232
BstH2I RGCGCY 1 cut(s) 106
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 3 cut(s) 136, 214, 459
BstMBI GATC 3 cut(s) 133, 211, 456
BstMWI GCNNNNNNNGC 2 cut(s) 102, 313
BstX2I RGATCY 1 cut(s) 456
BstYI RGATCY 1 cut(s) 456
Bsu36I CCTNAGG 2 cut(s) 198, 462
BtgI CCRYGG 1 cut(s) 372
BtsCI GGATG 1 cut(s) 232
Cac8I GCNNGC 2 cut(s) 318, 542
CfoI GCGC 1 cut(s) 105
Cfr13I GGNCC 1 cut(s) 268
Csp6I GTAC 4 cut(s) 45, 349, 469, 683
CviAII CATG 3 cut(s) 313, 373, 395
CviJI RGCY 9 cut(s) 85, 145, 320, 427, 475, 489, 544, 573, 624
CviKI_1 RGCY 9 cut(s) 85, 145, 320, 427, 475, 489, 544, 573, 624
CviQI GTAC 4 cut(s) 45, 349, 469, 683
DdeI CTNAG 6 cut(s) 130, 161, 198, 278, 462, 545
DinI GGCGCC 1 cut(s) 104
DpnI GATC 3 cut(s) 135, 213, 458
DpnII GATC 3 cut(s) 133, 211, 456
EciI GGCGGA 1 cut(s) 671
Eco130I CCWWGG 1 cut(s) 372
Eco47I GGWCC 1 cut(s) 268
Eco57I CTGAAG 1 cut(s) 107
Eco81I CCTNAGG 2 cut(s) 198, 462
EcoRI GAATTC 1 cut(s) 698
EcoT14I CCWWGG 1 cut(s) 372
EgeI GGCGCC 1 cut(s) 104
EheI GGCGCC 1 cut(s) 104
ErhI CCWWGG 1 cut(s) 372
FaeI CATG 3 cut(s) 316, 376, 398
FaqI GGGAC 1 cut(s) 178
FatI CATG 3 cut(s) 312, 372, 394
FbaI TGATCA 1 cut(s) 211
Fnu4HI GCNGC 1 cut(s) 476
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 1 cut(s) 476
GlaI GCGC 1 cut(s) 104
GluI GCNGC 1 cut(s) 476
HaeII RGCGCY 1 cut(s) 106
HhaI GCGC 1 cut(s) 105
Hin1I GRCGYC 1 cut(s) 103
Hin1II CATG 3 cut(s) 316, 376, 398
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HincII GTYRAC 1 cut(s) 559
HindII GTYRAC 1 cut(s) 559
HinfI GANTC 6 cut(s) 176, 191, 298, 601, 632, 659
HphI GGTGA 3 cut(s) 91, 171, 576
Hpy166II GTNNAC 2 cut(s) 157, 559
Hpy188I TCNGA 1 cut(s) 133
Hpy188III TCNNGA 4 cut(s) 515, 675, 703, 718
Hpy8I GTNNAC 2 cut(s) 157, 559
HpyAV CCTTC 2 cut(s) 70, 85
HpyCH4III ACNGT 2 cut(s) 154, 613
HpyCH4V TGCA 5 cut(s) 113, 316, 344, 619, 629
HpyF10VI GCNNNNNNNGC 2 cut(s) 102, 313
HpyF3I CTNAG 6 cut(s) 130, 161, 198, 278, 462, 545
Hsp92I GRCGYC 1 cut(s) 103
Hsp92II CATG 3 cut(s) 316, 376, 398
HspAI GCGC 1 cut(s) 103
KasI GGCGCC 1 cut(s) 102
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 3 cut(s) 133, 211, 456
MalI GATC 3 cut(s) 135, 213, 458
MboI GATC 3 cut(s) 133, 211, 456
MboII GAAGA 1 cut(s) 100
MflI RGATCY 1 cut(s) 456
MluCI AATT 3 cut(s) 71, 432, 698
Mly113I GGCGCC 1 cut(s) 103
MlyI GAGTC 1 cut(s) 200
MmeI TCCRAC 1 cut(s) 578
MseI TTAA 5 cut(s) 149, 243, 354, 359, 642
MslI CAYNNNNRTG 1 cut(s) 566
MwoI GCNNNNNNNGC 2 cut(s) 102, 313
NarI GGCGCC 1 cut(s) 103
NcoI CCATGG 1 cut(s) 372
NdeII GATC 3 cut(s) 133, 211, 456
NlaIII CATG 3 cut(s) 316, 376, 398
NlaIV GGNNCC 3 cut(s) 104, 458, 505
PfeI GAWTC 5 cut(s) 176, 298, 601, 632, 659
PkrI GCNGC 1 cut(s) 477
PleI GAGTC 1 cut(s) 199
PluTI GGCGCC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 199
PspN4I GGNNCC 3 cut(s) 104, 458, 505
PspPI GGNCC 1 cut(s) 268
PsuI RGATCY 1 cut(s) 456
RsaI GTAC 4 cut(s) 46, 350, 470, 684
RsaNI GTAC 4 cut(s) 45, 349, 469, 683
RseI CAYNNNNRTG 1 cut(s) 566
SaqAI TTAA 5 cut(s) 149, 243, 354, 359, 642
SatI GCNGC 1 cut(s) 476
Sau3AI GATC 3 cut(s) 133, 211, 456
Sau96I GGNCC 1 cut(s) 268
SchI GAGTC 1 cut(s) 200
SfoI GGCGCC 1 cut(s) 104
SinI GGWCC 1 cut(s) 268
SmiMI CAYNNNNRTG 1 cut(s) 566
SmlI CTYRAG 2 cut(s) 484, 716
SmoI CTYRAG 2 cut(s) 484, 716
Sse9I AATT 3 cut(s) 71, 432, 698
SsiI CCGC 3 cut(s) 119, 476, 656
SspDI GGCGCC 1 cut(s) 102
SspI AATATT 1 cut(s) 218
StyI CCWWGG 1 cut(s) 372
TaaI ACNGT 2 cut(s) 154, 613
TaqI TCGA 1 cut(s) 662
TaqII GACCGA 1 cut(s) 722
TasI AATT 3 cut(s) 71, 432, 698
TatI WGTACW 1 cut(s) 348
TauI GCSGC 1 cut(s) 478
TfiI GAWTC 5 cut(s) 176, 298, 601, 632, 659
Tru1I TTAA 5 cut(s) 149, 243, 354, 359, 642
Tru9I TTAA 5 cut(s) 149, 243, 354, 359, 642
TspDTI ATGAA 3 cut(s) 195, 243, 711
VpaK11BI GGWCC 1 cut(s) 268
XapI RAATTY 1 cut(s) 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.