Rw0G018250

Protein of unknown function (DUF1997)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00812
OG0003399
Physical Location & Seq
Forward (+)
10944 .. 12153
1210 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G018250.1

Sequence Viewer

Length: 720 bp
ATGGTTGGGGCAATTGCTGTCTGCAGAATTCTTGATAGAGGTATGCCTTCTCGGCCAGAAAAGCTGAAGGTGAAGCTGAAAAAGAAGCAGCAGGACAGGCATTGCCATTATGCAAAGGCGCATTCAAACTTGCTGAAAAAGGATGACCAGATGAAACCTTTAACCTTGCACCACAGAATCACTACTGTTGCCCTACTCTGTGAGTCCTCCAAGGTAACAATATTTATTTCTATATGCTTCATTGATCAATATTTGGAGGATGAACAAAGGGTTATTAAAGCCCTATTTCCAGGCATAGAGGCAAGAAACTTAACAAGGTGTAAAGCGTGGAGGATTCAAATGTCAACCATGCAATTCTTGTTCATATCTGTCTGCCTTGTATTATACATCAGTTTAAGATACAAGTCCAAAGGGAAAGACTACCCTCCTCATGTTCCTCATCACATCCCCATGGTCCTTGAGCTTGAAGCTACAAGGTGGGAACTTGAGGGCTTCCCCTATGAGTACCGGCCACGTGACTTTAGCATATCTGCTAAAGGAACCATTGACGTAATCTTAAGCTTCATTGTTTCACCTCTGCTTGGTTGGGTTCCACAAAGTGTTATGCATAGCCTCATAAAATCGCTGGTGAAGACTGTGATGGCGGATTCGACATCAAATGCCAGATTGCTTGAAGACTATGATGTATTCAAACGAAGAATGTGGTTTAATACTCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1997

Protein Analysis

239

Amino Acids

27.78

Weight (kDa)

9.55

Isoelectric Point (pI)

43.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1997 PF09366 81 - 183 1.8e-11 Protein of unknown function (DUF1997)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 644
AcoI YGGCCR 2 cut(s) 53, 509
AcsI RAATTY 1 cut(s) 27
AcuI CTGAAG 1 cut(s) 86
AcvI CACGTG 1 cut(s) 515
AdeI CACNNNGTG 1 cut(s) 599
AfaI GTAC 1 cut(s) 506
AfiI CCNNNNNNNGG 1 cut(s) 581
AflII CTTAAG 1 cut(s) 556
AgsI TTSAA 5 cut(s) 126, 338, 467, 674, 691
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 5 cut(s) 64, 76, 463, 470, 561
AluI AGCT 5 cut(s) 64, 76, 463, 470, 561
AoxI GGCC 2 cut(s) 53, 509
ApeKI GCWGC 1 cut(s) 88
ApoI RAATTY 1 cut(s) 27
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 454
AsuHPI GGTGA 3 cut(s) 82, 564, 640
AvaII GGWCC 1 cut(s) 454
BbrPI CACGTG 1 cut(s) 515
BbsI GAAGAC 2 cut(s) 638, 681
BbvI GCAGC 1 cut(s) 100
BccI CCATC 1 cut(s) 634
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 1 cut(s) 244
BfmI CTRYAG 1 cut(s) 22
BfrI CTTAAG 1 cut(s) 556
BglI GCCNNNNNGGC 1 cut(s) 52
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 454
BmgT120I GGNCC 1 cut(s) 454
BmiI GGNNCC 2 cut(s) 541, 591
BmrFI CCNGG 1 cut(s) 291
BpiI GAAGAC 2 cut(s) 638, 681
BpuEI CTTGAG 2 cut(s) 479, 506
BsaAI YACGTR 1 cut(s) 515
BsaJI CCNNGG 2 cut(s) 210, 450
Bsc4I CCNNNNNNNGG 1 cut(s) 581
Bse118I RCCGGY 1 cut(s) 507
Bse3DI GCAATG 1 cut(s) 100
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 2 cut(s) 210, 450
BseGI GGATG 3 cut(s) 148, 265, 444
BseLI CCNNNNNNNGG 1 cut(s) 581
BseMI GCAATG 1 cut(s) 100
BseRI GAGGAG 1 cut(s) 417
BseXI GCAGC 1 cut(s) 100
BshFI GGCC 2 cut(s) 55, 511
BsiSI CCGG 1 cut(s) 508
BslI CCNNNNNNNGG 1 cut(s) 581
BsmI GAATGC 1 cut(s) 121
BsnI GGCC 2 cut(s) 55, 511
Bsp143I GATC 1 cut(s) 244
Bsp19I CCATGG 1 cut(s) 450
BspACI CCGC 1 cut(s) 644
BspANI GGCC 2 cut(s) 55, 511
BspLI GGNNCC 2 cut(s) 541, 591
BspMAI CTGCAG 1 cut(s) 26
BspTI CTTAAG 1 cut(s) 556
BsrDI GCAATG 1 cut(s) 100
BsrFI RCCGGY 1 cut(s) 507
BssAI RCCGGY 1 cut(s) 507
BssECI CCNNGG 2 cut(s) 210, 450
BssMI GATC 1 cut(s) 244
BssT1I CCWWGG 2 cut(s) 210, 450
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 2 cut(s) 187, 637
BstAFI CTTAAG 1 cut(s) 556
BstBAI YACGTR 1 cut(s) 515
BstDSI CCRYGG 1 cut(s) 450
BstF5I GGATG 3 cut(s) 148, 265, 444
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 1 cut(s) 247
BstMBI GATC 1 cut(s) 244
BstMWI GCNNNNNNNGC 3 cut(s) 52, 61, 97
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 1 cut(s) 22
BstV1I GCAGC 1 cut(s) 100
BstV2I GAAGAC 2 cut(s) 638, 681
BsuRI GGCC 2 cut(s) 55, 511
BtgI CCRYGG 1 cut(s) 450
BtsCI GGATG 3 cut(s) 148, 265, 444
CfoI GCGC 1 cut(s) 121
Cfr10I RCCGGY 1 cut(s) 507
Cfr13I GGNCC 1 cut(s) 454
Csp6I GTAC 1 cut(s) 505
CviAII CATG 3 cut(s) 349, 431, 451
CviQI GTAC 1 cut(s) 505
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
DraIII CACNNNGTG 1 cut(s) 599
EaeI YGGCCR 2 cut(s) 53, 509
EciI GGCGGA 1 cut(s) 659
Eco130I CCWWGG 2 cut(s) 210, 450
Eco47I GGWCC 1 cut(s) 454
Eco57I CTGAAG 1 cut(s) 86
Eco72I CACGTG 1 cut(s) 515
EcoRI GAATTC 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 2 cut(s) 210, 450
EcoT22I ATGCAT 1 cut(s) 609
ErhI CCWWGG 2 cut(s) 210, 450
FaeI CATG 3 cut(s) 352, 434, 454
FatI CATG 3 cut(s) 348, 430, 450
FbaI TGATCA 1 cut(s) 244
Fnu4HI GCNGC 1 cut(s) 89
FokI GGATG 3 cut(s) 155, 272, 431
Fsp4HI GCNGC 1 cut(s) 89
GlaI GCGC 1 cut(s) 120
GluI GCNGC 1 cut(s) 89
HaeIII GGCC 2 cut(s) 55, 511
HapII CCGG 1 cut(s) 508
HhaI GCGC 1 cut(s) 121
Hin1II CATG 3 cut(s) 352, 434, 454
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HincII GTYRAC 1 cut(s) 345
HindII GTYRAC 1 cut(s) 345
HindIII AAGCTT 1 cut(s) 559
HinfI GANTC 4 cut(s) 177, 203, 334, 647
HpaII CCGG 1 cut(s) 508
HphI GGTGA 3 cut(s) 82, 564, 640
Hpy166II GTNNAC 1 cut(s) 345
Hpy188III TCNNGA 1 cut(s) 32
Hpy8I GTNNAC 1 cut(s) 345
HpyAV CCTTC 2 cut(s) 57, 61
HpyCH4III ACNGT 2 cut(s) 187, 637
HpyCH4IV ACGT 2 cut(s) 514, 549
HpyCH4V TGCA 5 cut(s) 24, 113, 169, 352, 607
HpyF10VI GCNNNNNNNGC 3 cut(s) 52, 61, 97
HpySE526I ACGT 2 cut(s) 514, 549
Hsp92II CATG 3 cut(s) 352, 434, 454
HspAI GCGC 1 cut(s) 119
Ksp22I TGATCA 1 cut(s) 244
Kzo9I GATC 1 cut(s) 244
LpnPI CCDG 9 cut(s) 69, 77, 82, 161, 276, 303, 521, 611, 676
Lsp1109I GCAGC 1 cut(s) 100
MaeII ACGT 2 cut(s) 514, 549
MaeIII GTNAC 2 cut(s) 214, 515
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MboII GAAGA 3 cut(s) 643, 686, 708
MfeI CAATTG 1 cut(s) 12
MluCI AATT 3 cut(s) 12, 27, 353
MlyI GAGTC 1 cut(s) 212
Mph1103I ATGCAT 1 cut(s) 609
MseI TTAA 6 cut(s) 161, 276, 311, 395, 557, 708
MslI CAYNNNNRTG 1 cut(s) 449
MspCI CTTAAG 1 cut(s) 556
MspI CCGG 1 cut(s) 508
MspR9I CCNGG 1 cut(s) 291
MunI CAATTG 1 cut(s) 12
Mva1269I GAATGC 1 cut(s) 121
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 3 cut(s) 52, 61, 97
NcoI CCATGG 1 cut(s) 450
NdeII GATC 1 cut(s) 244
NlaIII CATG 3 cut(s) 352, 434, 454
NlaIV GGNNCC 2 cut(s) 541, 591
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 515
NsiI ATGCAT 1 cut(s) 609
PctI GAATGC 1 cut(s) 121
PfeI GAWTC 3 cut(s) 177, 334, 647
PkrI GCNGC 1 cut(s) 90
PleI GAGTC 1 cut(s) 211
PmaCI CACGTG 1 cut(s) 515
PmlI CACGTG 1 cut(s) 515
PpsI GAGTC 1 cut(s) 211
Ppu21I YACGTR 1 cut(s) 515
Psp6I CCWGG 1 cut(s) 289
PspCI CACGTG 1 cut(s) 515
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 2 cut(s) 541, 591
PspPI GGNCC 1 cut(s) 454
PstI CTGCAG 1 cut(s) 26
RsaI GTAC 1 cut(s) 506
RsaNI GTAC 1 cut(s) 505
RseI CAYNNNNRTG 1 cut(s) 449
SaqAI TTAA 6 cut(s) 161, 276, 311, 395, 557, 708
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 1 cut(s) 244
Sau96I GGNCC 1 cut(s) 454
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 291
SfcI CTRYAG 1 cut(s) 22
SinI GGWCC 1 cut(s) 454
SmiMI CAYNNNNRTG 1 cut(s) 449
SmlI CTYRAG 3 cut(s) 458, 485, 556
SmoI CTYRAG 3 cut(s) 458, 485, 556
Sse9I AATT 3 cut(s) 12, 27, 353
SsiI CCGC 1 cut(s) 644
SspI AATATT 2 cut(s) 222, 251
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 2 cut(s) 210, 450
TaaI ACNGT 2 cut(s) 187, 637
TaiI ACGT 2 cut(s) 517, 552
TaqI TCGA 1 cut(s) 650
TasI AATT 3 cut(s) 12, 27, 353
TfiI GAWTC 3 cut(s) 177, 334, 647
Tru1I TTAA 6 cut(s) 161, 276, 311, 395, 557, 708
Tru9I TTAA 6 cut(s) 161, 276, 311, 395, 557, 708
TseFI GTSAC 1 cut(s) 515
TseI GCWGC 1 cut(s) 88
Tsp45I GTSAC 1 cut(s) 515
TspDTI ATGAA 5 cut(s) 167, 229, 276, 352, 553
TspGWI ACGGA 1 cut(s) 705
Vha464I CTTAAG 1 cut(s) 556
VpaK11BI GGWCC 1 cut(s) 454
XapI RAATTY 1 cut(s) 27
Zsp2I ATGCAT 1 cut(s) 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.