Rh2DG618900

Protein of unknown function (DUF1997)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0003399
Physical Location & Seq
Reverse (-)
84869920 .. 84871070
1151 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG618900.1

Sequence Viewer

Length: 732 bp
ATGGTTGAGGTAGTTGCTTTATGCCAATCCTTGCTTATTCTTGGTACTGGTATGCCTTTTCGCCCAGAAAAATTGAAGGTGAAGCTGAAGAAGGGCAGACGGCGCCACTATGCAAAATCGGTATTGAACTCGGATCATAAGAAGCCTTTAACCGTAAACCTCAGTTCCACTATTGATGCACCTCTTTATGAGTCCCCTGAGGTTTCATTTGATCAATATTTGGAGGATGAACAGAGGGTTATTAAAGCACTTTTCCCAGACATTGAGGACCAGCAACTTAGCAAGAAAGAGTGGAGGATTCAAATGCCAACCATGCAAGCCTTGTTCCTGTCTATCTACTTTGCAATGTACATTAAGTTAAGATACAAATCCATGGGGAAAGACTACCCTCCTCATGTTCCTCATCACATTCCCAAAATCATTGAGCTTGAAATTACAAGATGGGAACTTGGGGGGATCCCTGAGGAGTACCAGCCGCGTGACTTGAGCCTCTCCCTCAACGGAACCATCTATCCTGATAGAAAGCAAGGAACAAAAAGCAGACTTAGAGGTCAGTTTGACATAAACATGAGCTTTATTGTATCACCTCTGCCTGGTTGGATTCCTCATACTGTCGTGCAGAGCCTTGTAGAAGCGCTGGTTAAGAAAGCGATGGCGGATTCGACCTCAAATTCCAGATTGGTAGAAGACTATGATGAATTCAAGATGGAGAAACTCAAGAATGTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1997

Protein Analysis

243

Amino Acids

28.1

Weight (kDa)

9.08

Isoelectric Point (pI)

54.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1997 PF09366 70 - 234 4e-21 Protein of unknown function (DUF1997)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 549
AccB1I GGYRCC 1 cut(s) 102
AccII CGCG 1 cut(s) 478
AciI CCGC 2 cut(s) 476, 656
AclWI GGATC 3 cut(s) 141, 451, 464
AcsI RAATTY 2 cut(s) 670, 698
AcuI CTGAAG 1 cut(s) 107
AcyI GRCGYC 1 cut(s) 103
AfaI GTAC 3 cut(s) 46, 350, 470
AfeI AGCGCT 1 cut(s) 636
AfiI CCNNNNNNNGG 1 cut(s) 593
AgsI TTSAA 5 cut(s) 76, 127, 302, 431, 703
AjnI CCWGG 1 cut(s) 592
AloI GAACNNNNNNTCC 2 cut(s) 496, 528
AluBI AGCT 3 cut(s) 85, 427, 573
AluI AGCT 3 cut(s) 85, 427, 573
AlwI GGATC 3 cut(s) 141, 451, 464
Aor51HI AGCGCT 1 cut(s) 636
ApoI RAATTY 2 cut(s) 670, 698
AspLEI GCGC 2 cut(s) 105, 637
AspS9I GGNCC 1 cut(s) 268
AsuHPI GGTGA 2 cut(s) 91, 576
AvaII GGWCC 1 cut(s) 268
AxyI CCTNAGG 2 cut(s) 198, 462
BamHI GGATCC 1 cut(s) 456
BanI GGYRCC 1 cut(s) 102
BbsI GAAGAC 1 cut(s) 693
BccI CCATC 4 cut(s) 435, 515, 646, 700
BceAI ACGGC 1 cut(s) 116
BciT130I CCWGG 1 cut(s) 594
BclI TGATCA 1 cut(s) 211
BfoI RGCGCY 2 cut(s) 106, 638
BisI GCNGC 1 cut(s) 476
BlsI GCNGC 1 cut(s) 477
Bme1390I CCNGG 1 cut(s) 594
Bme18I GGWCC 1 cut(s) 268
BmgT120I GGNCC 1 cut(s) 268
BmiI GGNNCC 3 cut(s) 104, 458, 505
BmrFI CCNGG 1 cut(s) 594
BmsI GCATC 1 cut(s) 166
BpiI GAAGAC 1 cut(s) 693
BpuEI CTTGAG 2 cut(s) 505, 701
BsaBI GATNNNNATC 1 cut(s) 367
BsaHI GRCGYC 1 cut(s) 103
BsaJI CCNNGG 1 cut(s) 372
Bsc4I CCNNNNNNNGG 1 cut(s) 593
Bse1I ACTGG 1 cut(s) 52
Bse21I CCTNAGG 2 cut(s) 198, 462
Bse3DI GCAATG 1 cut(s) 351
Bse8I GATNNNNATC 1 cut(s) 367
BseBI CCWGG 1 cut(s) 594
BseDI CCNNGG 1 cut(s) 372
BseGI GGATG 1 cut(s) 232
BseJI GATNNNNATC 1 cut(s) 367
BseLI CCNNNNNNNGG 1 cut(s) 593
BseMI GCAATG 1 cut(s) 351
BseMII CTCAG 3 cut(s) 175, 189, 453
BseNI ACTGG 1 cut(s) 52
BseRI GAGGAG 2 cut(s) 381, 479
BsgI GTGCAG 1 cut(s) 638
Bsh1236I CGCG 1 cut(s) 478
BshNI GGYRCC 1 cut(s) 102
BslFI GGGAC 1 cut(s) 178
BslI CCNNNNNNNGG 1 cut(s) 593
BsmFI GGGAC 1 cut(s) 178
Bsp1407I TGTACA 1 cut(s) 348
Bsp143I GATC 3 cut(s) 133, 211, 456
Bsp19I CCATGG 1 cut(s) 372
BspACI CCGC 2 cut(s) 476, 656
BspCNI CTCAG 3 cut(s) 174, 190, 454
BspFNI CGCG 1 cut(s) 478
BspLI GGNNCC 3 cut(s) 104, 458, 505
BspPI GGATC 3 cut(s) 141, 451, 464
BspT107I GGYRCC 1 cut(s) 102
BsrDI GCAATG 1 cut(s) 351
BsrGI TGTACA 1 cut(s) 348
BsrI ACTGG 1 cut(s) 52
BssECI CCNNGG 1 cut(s) 372
BssMI GATC 3 cut(s) 133, 211, 456
BssNI GRCGYC 1 cut(s) 103
BssT1I CCWWGG 1 cut(s) 372
Bst2UI CCWGG 1 cut(s) 594
Bst4CI ACNGT 2 cut(s) 154, 613
BstACI GRCGYC 1 cut(s) 103
BstAUI TGTACA 1 cut(s) 348
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 5 cut(s) 161, 198, 278, 462, 545
BstDSI CCRYGG 1 cut(s) 372
BstF5I GGATG 1 cut(s) 232
BstFNI CGCG 1 cut(s) 478
BstH2I RGCGCY 2 cut(s) 106, 638
BstHHI GCGC 2 cut(s) 105, 637
BstKTI GATC 3 cut(s) 136, 214, 459
BstMBI GATC 3 cut(s) 133, 211, 456
BstMWI GCNNNNNNNGC 2 cut(s) 102, 313
BstNI CCWGG 1 cut(s) 594
BstSCI CCNGG 1 cut(s) 592
BstUI CGCG 1 cut(s) 478
BstV2I GAAGAC 1 cut(s) 693
BstX2I RGATCY 1 cut(s) 456
BstYI RGATCY 1 cut(s) 456
Bsu36I CCTNAGG 2 cut(s) 198, 462
BtgI CCRYGG 1 cut(s) 372
BtgZI GCGATG 1 cut(s) 665
BtsCI GGATG 1 cut(s) 232
Cac8I GCNNGC 1 cut(s) 318
CfoI GCGC 2 cut(s) 105, 637
Cfr13I GGNCC 1 cut(s) 268
Csp6I GTAC 3 cut(s) 45, 349, 469
CviAII CATG 4 cut(s) 313, 373, 395, 568
CviJI RGCY 8 cut(s) 85, 145, 320, 427, 475, 489, 573, 624
CviKI_1 RGCY 8 cut(s) 85, 145, 320, 427, 475, 489, 573, 624
CviQI GTAC 3 cut(s) 45, 349, 469
DdeI CTNAG 5 cut(s) 161, 198, 278, 462, 545
DinI GGCGCC 1 cut(s) 104
DpnI GATC 3 cut(s) 135, 213, 458
DpnII GATC 3 cut(s) 133, 211, 456
DrdI GACNNNNNNGTC 1 cut(s) 549
DseDI GACNNNNNNGTC 1 cut(s) 549
EciI GGCGGA 1 cut(s) 671
Eco130I CCWWGG 1 cut(s) 372
Eco47I GGWCC 1 cut(s) 268
Eco47III AGCGCT 1 cut(s) 636
Eco57I CTGAAG 1 cut(s) 107
Eco81I CCTNAGG 2 cut(s) 198, 462
EcoRI GAATTC 1 cut(s) 698
EcoRII CCWGG 1 cut(s) 592
EcoT14I CCWWGG 1 cut(s) 372
EgeI GGCGCC 1 cut(s) 104
EheI GGCGCC 1 cut(s) 104
ErhI CCWWGG 1 cut(s) 372
FaeI CATG 4 cut(s) 316, 376, 398, 571
FaqI GGGAC 1 cut(s) 178
FatI CATG 4 cut(s) 312, 372, 394, 567
FbaI TGATCA 1 cut(s) 211
Fnu4HI GCNGC 1 cut(s) 476
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 1 cut(s) 476
GlaI GCGC 2 cut(s) 104, 636
GluI GCNGC 1 cut(s) 476
HaeII RGCGCY 2 cut(s) 106, 638
HhaI GCGC 2 cut(s) 105, 637
Hin1I GRCGYC 1 cut(s) 103
Hin1II CATG 4 cut(s) 316, 376, 398, 571
Hin6I GCGC 2 cut(s) 103, 635
HinP1I GCGC 2 cut(s) 103, 635
HinfI GANTC 4 cut(s) 191, 298, 601, 659
HphI GGTGA 2 cut(s) 91, 576
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 1 cut(s) 133
Hpy188III TCNNGA 4 cut(s) 515, 675, 703, 718
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 2 cut(s) 70, 85
HpyCH4III ACNGT 2 cut(s) 154, 613
HpyCH4V TGCA 5 cut(s) 113, 179, 316, 344, 619
HpyF10VI GCNNNNNNNGC 2 cut(s) 102, 313
HpyF3I CTNAG 5 cut(s) 161, 198, 278, 462, 545
Hsp92I GRCGYC 1 cut(s) 103
Hsp92II CATG 4 cut(s) 316, 376, 398, 571
HspAI GCGC 2 cut(s) 103, 635
KasI GGCGCC 1 cut(s) 102
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 3 cut(s) 133, 211, 456
LweI GCATC 1 cut(s) 166
MaeIII GTNAC 1 cut(s) 479
MalI GATC 3 cut(s) 135, 213, 458
MboI GATC 3 cut(s) 133, 211, 456
MboII GAAGA 2 cut(s) 100, 698
MflI RGATCY 1 cut(s) 456
MluCI AATT 4 cut(s) 71, 432, 670, 698
Mly113I GGCGCC 1 cut(s) 103
MlyI GAGTC 1 cut(s) 200
MmeI TCCRAC 1 cut(s) 578
MseI TTAA 5 cut(s) 149, 243, 354, 359, 642
MslI CAYNNNNRTG 1 cut(s) 566
MspR9I CCNGG 1 cut(s) 594
MvaI CCWGG 1 cut(s) 594
MvnI CGCG 1 cut(s) 478
MwoI GCNNNNNNNGC 2 cut(s) 102, 313
NarI GGCGCC 1 cut(s) 103
NcoI CCATGG 1 cut(s) 372
NdeII GATC 3 cut(s) 133, 211, 456
NlaIII CATG 4 cut(s) 316, 376, 398, 571
NlaIV GGNNCC 3 cut(s) 104, 458, 505
NmuCI GTSAC 1 cut(s) 479
PfeI GAWTC 3 cut(s) 298, 601, 659
PkrI GCNGC 1 cut(s) 477
PleI GAGTC 1 cut(s) 199
PluTI GGCGCC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 592
PspGI CCWGG 1 cut(s) 592
PspN4I GGNNCC 3 cut(s) 104, 458, 505
PspPI GGNCC 1 cut(s) 268
PsuI RGATCY 1 cut(s) 456
RsaI GTAC 3 cut(s) 46, 350, 470
RsaNI GTAC 3 cut(s) 45, 349, 469
RseI CAYNNNNRTG 1 cut(s) 566
SaqAI TTAA 5 cut(s) 149, 243, 354, 359, 642
SatI GCNGC 1 cut(s) 476
Sau3AI GATC 3 cut(s) 133, 211, 456
Sau96I GGNCC 1 cut(s) 268
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 1 cut(s) 594
SfaNI GCATC 1 cut(s) 166
SfoI GGCGCC 1 cut(s) 104
SinI GGWCC 1 cut(s) 268
SmiMI CAYNNNNRTG 1 cut(s) 566
SmlI CTYRAG 2 cut(s) 484, 716
SmoI CTYRAG 2 cut(s) 484, 716
Sse9I AATT 4 cut(s) 71, 432, 670, 698
SsiI CCGC 2 cut(s) 476, 656
SspDI GGCGCC 1 cut(s) 102
SspI AATATT 1 cut(s) 218
StyD4I CCNGG 1 cut(s) 592
StyI CCWWGG 1 cut(s) 372
TaaI ACNGT 2 cut(s) 154, 613
TaqI TCGA 1 cut(s) 662
TasI AATT 4 cut(s) 71, 432, 670, 698
TatI WGTACW 1 cut(s) 348
TauI GCSGC 1 cut(s) 478
TfiI GAWTC 3 cut(s) 298, 601, 659
Tru1I TTAA 5 cut(s) 149, 243, 354, 359, 642
Tru9I TTAA 5 cut(s) 149, 243, 354, 359, 642
TseFI GTSAC 1 cut(s) 479
Tsp45I GTSAC 1 cut(s) 479
TspDTI ATGAA 3 cut(s) 195, 243, 711
TspGWI ACGGA 1 cut(s) 516
VpaK11BI GGWCC 1 cut(s) 268
XapI RAATTY 2 cut(s) 670, 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.