Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015771.1

Orthogroup ID

OG0003399

Physical Location & Seq

Genomic Coordinates Forward (+)

18839 .. 19989

Gene Structure 1151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015771.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atggttgaggtagttgctttatgccaacccttgcttattcttggtactggtatgccttttcgcccagaaaaattgaaggtgaagctgaagaagggcagacggcgccactatgcaaaagcggtattgaactcggatcataagaagcctttaaccgtaaacctcagttccactattgatgcacctctttatgagtcccctgaggtttcatttgatcaatatttggaggatgaacagagggttattaaagcactgttcccagacattgaggaccagcaacttagcaagaaagagtggaggattcaaatgccaaccatgcaagccttgttcctgtctatctactttgcaatgtacattaagttaagatacaaatccatggggaaagactaccctcctcatgttcctcatcacattcccaaaatcattgagcttgaaattacaagatgggaacttggggggatccctgtggagtaccagccgcttgacttgagcctctccctcaaaggaaccatatatcctgatagaaagcaaggaacaaaaagcaggcttagaggtcagtttgacataaatatgagctttattgtatcacctctgcttggttggattcctcatactgtcgtgcagagccttgcagaagcgctggttaagaaagcgatggcggattcgacatcaaattccagattggtagaagactatgatgaattcaagacggagaaactcaagaatgttgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1997

Protein Analysis

243

Amino Acids

28.0

Weight (kDa)

9.19

Isoelectric Point (pI)

51.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39520 AT5G39530 AT5G39530
fragaria_vesca	FvH4_6g48000 FvH4_6g48001
malus_domestica	MD09G1055000.v1.1 MD09G1055400.v1.1 MD17G1053100.v1.1
prunus_persica	Prupe.3G263500_v2.0.a1
pyrus_communis	pycom111g04640
rosa_chinensis	RchiOBHm_Chr2g0167241 RchiOBHm_Chr2g0167251 RchiOBHm_Chr2g0167291
rosa_laevigata	RLG00000021702 RLG00000021703
rosa_multiflora	Rmu_sc0015771.1_g000011 Rmu_sc0030724.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083640 Rroxscaffold_2G00083650 Rroxscaffold_2G00083660
rosa_rugosa	Rorug02G0529200 Rorug02G0529200 Rorug02G0529300
rosa_samantha	Rh2AG596200 Rh2BG607200 Rh2BG607300 Rh2BG607500 Rh2CG578200 Rh2CG578300 Rh2DG618800 Rh2DG618900 Rh2DG619000
rosa_wichuraiana	Rw0G018240 Rw0G018250 Rw2G049610 Rw2G049620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	102
AciI	CCGC	3 cut(s)	119, 476, 656
AclWI	GGATC	3 cut(s)	141, 451, 464
AcsI	RAATTY	2 cut(s)	670, 698
AcuI	CTGAAG	1 cut(s)	107
AcyI	GRCGYC	1 cut(s)	103
AfaI	GTAC	3 cut(s)	46, 350, 470
AfeI	AGCGCT	1 cut(s)	636
AfiI	CCNNNNNNNGG	1 cut(s)	593
AgsI	TTSAA	5 cut(s)	76, 127, 302, 431, 703
AloI	GAACNNNNNNTCC	2 cut(s)	496, 528
AluBI	AGCT	3 cut(s)	85, 427, 573
AluI	AGCT	3 cut(s)	85, 427, 573
AlwI	GGATC	3 cut(s)	141, 451, 464
Aor51HI	AGCGCT	1 cut(s)	636
ApoI	RAATTY	2 cut(s)	670, 698
AspLEI	GCGC	2 cut(s)	105, 637
AspS9I	GGNCC	1 cut(s)	268
AsuHPI	GGTGA	2 cut(s)	91, 576
AvaII	GGWCC	1 cut(s)	268
AxyI	CCTNAGG	1 cut(s)	198
BamHI	GGATCC	1 cut(s)	456
BanI	GGYRCC	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	693
BccI	CCATC	2 cut(s)	435, 646
BceAI	ACGGC	1 cut(s)	116
BclI	TGATCA	1 cut(s)	211
BfoI	RGCGCY	2 cut(s)	106, 638
BisI	GCNGC	1 cut(s)	476
BlsI	GCNGC	1 cut(s)	477
Bme18I	GGWCC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	3 cut(s)	104, 458, 505
BmsI	GCATC	1 cut(s)	166
BpiI	GAAGAC	1 cut(s)	693
BpuEI	CTTGAG	2 cut(s)	505, 701
BsaBI	GATNNNNATC	1 cut(s)	367
BsaHI	GRCGYC	1 cut(s)	103
BsaJI	CCNNGG	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	1 cut(s)	593
Bse1I	ACTGG	1 cut(s)	52
Bse21I	CCTNAGG	1 cut(s)	198
Bse3DI	GCAATG	1 cut(s)	351
Bse8I	GATNNNNATC	1 cut(s)	367
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	1 cut(s)	232
BseJI	GATNNNNATC	1 cut(s)	367
BseLI	CCNNNNNNNGG	1 cut(s)	593
BseMI	GCAATG	1 cut(s)	351
BseMII	CTCAG	2 cut(s)	175, 189
BseNI	ACTGG	1 cut(s)	52
BseRI	GAGGAG	1 cut(s)	381
BsgI	GTGCAG	1 cut(s)	638
BshNI	GGYRCC	1 cut(s)	102
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	1 cut(s)	593
BsmFI	GGGAC	1 cut(s)	178
Bsp1407I	TGTACA	1 cut(s)	348
Bsp143I	GATC	3 cut(s)	133, 211, 456
Bsp19I	CCATGG	1 cut(s)	372
BspACI	CCGC	3 cut(s)	119, 476, 656
BspCNI	CTCAG	2 cut(s)	174, 190
BspLI	GGNNCC	3 cut(s)	104, 458, 505
BspPI	GGATC	3 cut(s)	141, 451, 464
BspT107I	GGYRCC	1 cut(s)	102
BsrDI	GCAATG	1 cut(s)	351
BsrGI	TGTACA	1 cut(s)	348
BsrI	ACTGG	1 cut(s)	52
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	3 cut(s)	133, 211, 456
BssNI	GRCGYC	1 cut(s)	103
BssT1I	CCWWGG	1 cut(s)	372
Bst4CI	ACNGT	3 cut(s)	154, 252, 613
BstACI	GRCGYC	1 cut(s)	103
BstAUI	TGTACA	1 cut(s)	348
BstC8I	GCNNGC	2 cut(s)	318, 542
BstDEI	CTNAG	4 cut(s)	161, 198, 278, 545
BstDSI	CCRYGG	1 cut(s)	372
BstF5I	GGATG	1 cut(s)	232
BstH2I	RGCGCY	2 cut(s)	106, 638
BstHHI	GCGC	2 cut(s)	105, 637
BstKTI	GATC	3 cut(s)	136, 214, 459
BstMBI	GATC	3 cut(s)	133, 211, 456
BstMWI	GCNNNNNNNGC	2 cut(s)	102, 313
BstV2I	GAAGAC	1 cut(s)	693
BstX2I	RGATCY	1 cut(s)	456
BstYI	RGATCY	1 cut(s)	456
Bsu36I	CCTNAGG	1 cut(s)	198
BtgI	CCRYGG	1 cut(s)	372
BtgZI	GCGATG	1 cut(s)	665
BtsCI	GGATG	1 cut(s)	232
BtsIMutI	CAGTG	1 cut(s)	248
Cac8I	GCNNGC	2 cut(s)	318, 542
CfoI	GCGC	2 cut(s)	105, 637
Cfr13I	GGNCC	1 cut(s)	268
Csp6I	GTAC	3 cut(s)	45, 349, 469
CviAII	CATG	3 cut(s)	313, 373, 395
CviJI	RGCY	9 cut(s)	85, 145, 320, 427, 475, 489, 544, 573, 624
CviKI_1	RGCY	9 cut(s)	85, 145, 320, 427, 475, 489, 544, 573, 624
CviQI	GTAC	3 cut(s)	45, 349, 469
DdeI	CTNAG	4 cut(s)	161, 198, 278, 545
DinI	GGCGCC	1 cut(s)	104
DpnI	GATC	3 cut(s)	135, 213, 458
DpnII	GATC	3 cut(s)	133, 211, 456
EciI	GGCGGA	1 cut(s)	671
Eco130I	CCWWGG	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	268
Eco47III	AGCGCT	1 cut(s)	636
Eco57I	CTGAAG	1 cut(s)	107
Eco81I	CCTNAGG	1 cut(s)	198
EcoRI	GAATTC	1 cut(s)	698
EcoT14I	CCWWGG	1 cut(s)	372
EgeI	GGCGCC	1 cut(s)	104
EheI	GGCGCC	1 cut(s)	104
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	3 cut(s)	316, 376, 398
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	3 cut(s)	312, 372, 394
FbaI	TGATCA	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	476
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	1 cut(s)	476
GlaI	GCGC	2 cut(s)	104, 636
GluI	GCNGC	1 cut(s)	476
HaeII	RGCGCY	2 cut(s)	106, 638
HhaI	GCGC	2 cut(s)	105, 637
Hin1I	GRCGYC	1 cut(s)	103
Hin1II	CATG	3 cut(s)	316, 376, 398
Hin6I	GCGC	2 cut(s)	103, 635
HinP1I	GCGC	2 cut(s)	103, 635
HinfI	GANTC	4 cut(s)	191, 298, 601, 659
HphI	GGTGA	2 cut(s)	91, 576
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	1 cut(s)	133
Hpy188III	TCNNGA	4 cut(s)	515, 675, 703, 718
Hpy8I	GTNNAC	1 cut(s)	157
HpyAV	CCTTC	2 cut(s)	70, 85
HpyCH4III	ACNGT	3 cut(s)	154, 252, 613
HpyCH4V	TGCA	6 cut(s)	113, 179, 316, 344, 619, 629
HpyF10VI	GCNNNNNNNGC	2 cut(s)	102, 313
HpyF3I	CTNAG	4 cut(s)	161, 198, 278, 545
Hsp92I	GRCGYC	1 cut(s)	103
Hsp92II	CATG	3 cut(s)	316, 376, 398
HspAI	GCGC	2 cut(s)	103, 635
KasI	GGCGCC	1 cut(s)	102
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	3 cut(s)	133, 211, 456
LweI	GCATC	1 cut(s)	166
MalI	GATC	3 cut(s)	135, 213, 458
MboI	GATC	3 cut(s)	133, 211, 456
MboII	GAAGA	2 cut(s)	100, 698
MflI	RGATCY	1 cut(s)	456
MluCI	AATT	4 cut(s)	71, 432, 670, 698
Mly113I	GGCGCC	1 cut(s)	103
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	578
MseI	TTAA	5 cut(s)	149, 243, 354, 359, 642
MslI	CAYNNNNRTG	1 cut(s)	566
MwoI	GCNNNNNNNGC	2 cut(s)	102, 313
NarI	GGCGCC	1 cut(s)	103
NcoI	CCATGG	1 cut(s)	372
NdeII	GATC	3 cut(s)	133, 211, 456
NlaIII	CATG	3 cut(s)	316, 376, 398
NlaIV	GGNNCC	3 cut(s)	104, 458, 505
PfeI	GAWTC	3 cut(s)	298, 601, 659
PkrI	GCNGC	1 cut(s)	477
PleI	GAGTC	1 cut(s)	199
PluTI	GGCGCC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	199
PspN4I	GGNNCC	3 cut(s)	104, 458, 505
PspPI	GGNCC	1 cut(s)	268
PsuI	RGATCY	1 cut(s)	456
RsaI	GTAC	3 cut(s)	46, 350, 470
RsaNI	GTAC	3 cut(s)	45, 349, 469
RseI	CAYNNNNRTG	1 cut(s)	566
SaqAI	TTAA	5 cut(s)	149, 243, 354, 359, 642
SatI	GCNGC	1 cut(s)	476
Sau3AI	GATC	3 cut(s)	133, 211, 456
Sau96I	GGNCC	1 cut(s)	268
SchI	GAGTC	1 cut(s)	200
SfaNI	GCATC	1 cut(s)	166
SfoI	GGCGCC	1 cut(s)	104
SinI	GGWCC	1 cut(s)	268
SmiMI	CAYNNNNRTG	1 cut(s)	566
SmlI	CTYRAG	2 cut(s)	484, 716
SmoI	CTYRAG	2 cut(s)	484, 716
Sse9I	AATT	4 cut(s)	71, 432, 670, 698
SsiI	CCGC	3 cut(s)	119, 476, 656
SspDI	GGCGCC	1 cut(s)	102
SspI	AATATT	1 cut(s)	218
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	3 cut(s)	154, 252, 613
TaqI	TCGA	1 cut(s)	662
TasI	AATT	4 cut(s)	71, 432, 670, 698
TatI	WGTACW	1 cut(s)	348
TauI	GCSGC	1 cut(s)	478
TfiI	GAWTC	3 cut(s)	298, 601, 659
Tru1I	TTAA	5 cut(s)	149, 243, 354, 359, 642
Tru9I	TTAA	5 cut(s)	149, 243, 354, 359, 642
TscAI	CASTG	1 cut(s)	255
TspDTI	ATGAA	3 cut(s)	195, 243, 711
TspGWI	ACGGA	1 cut(s)	722
TspRI	CASTG	1 cut(s)	255
VpaK11BI	GGWCC	1 cut(s)	268
XapI	RAATTY	2 cut(s)	670, 698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.