Rh2BG607200

Protein of unknown function (DUF1997)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003399
Physical Location & Seq
Reverse (-)
82876767 .. 82878318
1552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG607200.1

Sequence Viewer

Length: 954 bp
ATGGTTGAGGCAATTGCTGTCTGCAGAATTCTTGATAGAGGTATGCCTTCTGGCCCAGAAAAGCTGAAGGTGAAGCTGAAAAAGAAGCAGCAGGACAGGCATTGCCATTATGCAAAGGCGCTATTCAACTTGCCGAAAAAGGATGACCAGATGAAACCTTTAACCTTGCACCACAGAATCACTACTGTTGCCCTACTCTGTGAGCCCTCCAAGGCTTCATTTGATCAATATTTGGAGGATGAACAAAGGGTTATTAAAGCCCTATTTCCAGGCATAGAGGCAAGAAAACTTAACAAGAAAGCGTGGAGGATTCAAATGCCAACCATGCAATTATTGTTCATGTCTGTCTGCCTTGTATTATACATCAGTTTAAGATACAAGTCCAAAGGGAAAGACTACCCTCCTCATGTTCCTCATCACATTCCCATGGTCCTTGAGCTTGAAGCTACAAGGTGGGAACTTGAGGGCTTCCCCTATGAGTACCGGCCACGTGACTTTAGCATATCTGCTAAAGGAACCTTATATCCTGATAGAAAGCAAGGAACACAAAGCAAGCTTCGAACCCAGATTGACGTAATCTTAAGCTTCATTGTTTCACCTCTGCTTGGTTGGGTTCCACAAAGTGTTATGCATAGCCTCATAAAATCGGTTAGTCATTCATTTCGAAACCACTTCATAAGTATCTATATGTATTTGGAATTTCCATCCACAAGTAATATTTTCAGGTCGATTGACATTGACTGTATTGTTTTCTATGAACTGCTGGTGAAGACTGTGATGGCGGATTCGACATCCAATGCCAGATTGCTTGAAGACTATGATGTATTCAAAACGAAGAATGTGGTTCAGTACTCCGTGAAAGATCCTTGGAACGATCAGCTCTTGATTCGTTGTATTGAAATATATAAAAACAAGTTAAGAAATGAGTGGGATTGTGAAAAGGAAAGGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1997

Protein Analysis

317

Amino Acids

37.22

Weight (kDa)

9.19

Isoelectric Point (pI)

47.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1997 PF09366 74 - 217 5.4e-22 Protein of unknown function (DUF1997)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 782
AclWI GGATC 1 cut(s) 857
AcoI YGGCCR 1 cut(s) 485
AcsI RAATTY 2 cut(s) 27, 698
AcuI CTGAAG 1 cut(s) 86
AcvI CACGTG 1 cut(s) 491
AdeI CACNNNGTG 1 cut(s) 623
AfaI GTAC 2 cut(s) 482, 851
AfiI CCNNNNNNNGG 1 cut(s) 605
AflII CTTAAG 1 cut(s) 580
AgsI TTSAA 6 cut(s) 127, 314, 443, 812, 829, 899
AjnI CCWGG 1 cut(s) 268
AloI GAACNNNNNNTCC 2 cut(s) 508, 540
AluBI AGCT 7 cut(s) 64, 76, 439, 446, 556, 585, 880
AluI AGCT 7 cut(s) 64, 76, 439, 446, 556, 585, 880
AlwI GGATC 1 cut(s) 857
AoxI GGCC 2 cut(s) 52, 485
ApeKI GCWGC 1 cut(s) 88
ApoI RAATTY 2 cut(s) 27, 698
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 2 cut(s) 53, 430
AsuHPI GGTGA 3 cut(s) 82, 588, 778
AsuII TTCGAA 2 cut(s) 559, 664
AvaII GGWCC 1 cut(s) 430
BanII GRGCYC 1 cut(s) 207
BbrPI CACGTG 1 cut(s) 491
BbsI GAAGAC 2 cut(s) 776, 819
BbvI GCAGC 1 cut(s) 100
BccI CCATC 2 cut(s) 712, 772
BciT130I CCWGG 1 cut(s) 270
BclI TGATCA 1 cut(s) 223
BfmI CTRYAG 1 cut(s) 22
BfoI RGCGCY 1 cut(s) 122
BfrI CTTAAG 1 cut(s) 580
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
BmcAI AGTACT 1 cut(s) 851
Bme1390I CCNGG 1 cut(s) 270
Bme18I GGWCC 1 cut(s) 430
BmgT120I GGNCC 2 cut(s) 53, 430
BmiI GGNNCC 2 cut(s) 517, 615
BmrFI CCNGG 1 cut(s) 270
BpiI GAAGAC 2 cut(s) 776, 819
Bpu14I TTCGAA 2 cut(s) 559, 664
BpuEI CTTGAG 2 cut(s) 455, 482
BsaAI YACGTR 1 cut(s) 491
BsaJI CCNNGG 3 cut(s) 210, 426, 866
Bsc4I CCNNNNNNNGG 1 cut(s) 605
Bse118I RCCGGY 1 cut(s) 483
Bse3DI GCAATG 1 cut(s) 100
BseBI CCWGG 1 cut(s) 270
BseDI CCNNGG 3 cut(s) 210, 426, 866
BseGI GGATG 4 cut(s) 148, 244, 704, 791
BseLI CCNNNNNNNGG 1 cut(s) 605
BseMI GCAATG 1 cut(s) 100
BseRI GAGGAG 1 cut(s) 393
BseXI GCAGC 1 cut(s) 100
BshFI GGCC 2 cut(s) 54, 487
BsiSI CCGG 1 cut(s) 484
BslI CCNNNNNNNGG 1 cut(s) 605
BsnI GGCC 2 cut(s) 54, 487
Bsp119I TTCGAA 2 cut(s) 559, 664
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 3 cut(s) 223, 862, 874
Bsp19I CCATGG 1 cut(s) 426
BspACI CCGC 1 cut(s) 782
BspANI GGCC 2 cut(s) 54, 487
BspLI GGNNCC 2 cut(s) 517, 615
BspMAI CTGCAG 1 cut(s) 26
BspPI GGATC 1 cut(s) 857
BspT104I TTCGAA 2 cut(s) 559, 664
BspTI CTTAAG 1 cut(s) 580
BsrDI GCAATG 1 cut(s) 100
BsrFI RCCGGY 1 cut(s) 483
BssAI RCCGGY 1 cut(s) 483
BssECI CCNNGG 3 cut(s) 210, 426, 866
BssMI GATC 3 cut(s) 223, 862, 874
BssT1I CCWWGG 3 cut(s) 210, 426, 866
Bst2UI CCWGG 1 cut(s) 270
Bst4CI ACNGT 3 cut(s) 187, 743, 775
BstAFI CTTAAG 1 cut(s) 580
BstBAI YACGTR 1 cut(s) 491
BstBI TTCGAA 2 cut(s) 559, 664
BstC8I GCNNGC 1 cut(s) 554
BstDSI CCRYGG 1 cut(s) 426
BstF5I GGATG 4 cut(s) 148, 244, 704, 791
BstH2I RGCGCY 1 cut(s) 122
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 3 cut(s) 226, 865, 877
BstMBI GATC 3 cut(s) 223, 862, 874
BstMWI GCNNNNNNNGC 2 cut(s) 97, 325
BstNI CCWGG 1 cut(s) 270
BstSCI CCNGG 1 cut(s) 268
BstSFI CTRYAG 1 cut(s) 22
BstV1I GCAGC 1 cut(s) 100
BstV2I GAAGAC 2 cut(s) 776, 819
BstX2I RGATCY 1 cut(s) 862
BstYI RGATCY 1 cut(s) 862
BsuRI GGCC 2 cut(s) 54, 487
BtgI CCRYGG 1 cut(s) 426
BtsCI GGATG 4 cut(s) 148, 244, 704, 791
Cac8I GCNNGC 1 cut(s) 554
CfoI GCGC 1 cut(s) 121
Cfr10I RCCGGY 1 cut(s) 483
Cfr13I GGNCC 2 cut(s) 53, 430
Csp6I GTAC 2 cut(s) 481, 850
CviAII CATG 4 cut(s) 325, 340, 407, 427
CviQI GTAC 2 cut(s) 481, 850
DpnI GATC 3 cut(s) 225, 864, 876
DpnII GATC 3 cut(s) 223, 862, 874
DraIII CACNNNGTG 1 cut(s) 623
EaeI YGGCCR 1 cut(s) 485
EciI GGCGGA 1 cut(s) 797
Eco130I CCWWGG 3 cut(s) 210, 426, 866
Eco24I GRGCYC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 430
Eco57I CTGAAG 1 cut(s) 86
Eco72I CACGTG 1 cut(s) 491
EcoRI GAATTC 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 268
EcoT14I CCWWGG 3 cut(s) 210, 426, 866
EcoT22I ATGCAT 1 cut(s) 633
EcoT38I GRGCYC 1 cut(s) 207
ErhI CCWWGG 3 cut(s) 210, 426, 866
FaeI CATG 4 cut(s) 328, 343, 410, 430
FatI CATG 4 cut(s) 324, 339, 406, 426
FbaI TGATCA 1 cut(s) 223
Fnu4HI GCNGC 1 cut(s) 89
FokI GGATG 4 cut(s) 155, 251, 691, 778
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 1 cut(s) 89
GlaI GCGC 1 cut(s) 120
GluI GCNGC 1 cut(s) 89
HaeII RGCGCY 1 cut(s) 122
HaeIII GGCC 2 cut(s) 54, 487
HapII CCGG 1 cut(s) 484
HhaI GCGC 1 cut(s) 121
Hin1II CATG 4 cut(s) 328, 343, 410, 430
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HindIII AAGCTT 2 cut(s) 554, 583
HinfI GANTC 4 cut(s) 177, 310, 785, 886
HpaII CCGG 1 cut(s) 484
HphI GGTGA 3 cut(s) 82, 588, 778
Hpy188III TCNNGA 3 cut(s) 32, 527, 883
HpyAV CCTTC 2 cut(s) 57, 61
HpyCH4III ACNGT 3 cut(s) 187, 743, 775
HpyCH4IV ACGT 2 cut(s) 490, 573
HpyCH4V TGCA 5 cut(s) 24, 113, 169, 328, 631
HpyF10VI GCNNNNNNNGC 2 cut(s) 97, 325
HpySE526I ACGT 2 cut(s) 490, 573
Hsp92II CATG 4 cut(s) 328, 343, 410, 430
HspAI GCGC 1 cut(s) 119
Ksp22I TGATCA 1 cut(s) 223
Kzo9I GATC 3 cut(s) 223, 862, 874
Lsp1109I GCAGC 1 cut(s) 100
MaeII ACGT 2 cut(s) 490, 573
MaeIII GTNAC 1 cut(s) 491
MalI GATC 3 cut(s) 225, 864, 876
MboI GATC 3 cut(s) 223, 862, 874
MboII GAAGA 3 cut(s) 781, 824, 847
MfeI CAATTG 1 cut(s) 12
MflI RGATCY 1 cut(s) 862
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 4 cut(s) 12, 27, 329, 698
Mph1103I ATGCAT 1 cut(s) 633
MseI TTAA 6 cut(s) 161, 255, 291, 371, 581, 917
MslI CAYNNNNRTG 1 cut(s) 425
MspCI CTTAAG 1 cut(s) 580
MspI CCGG 1 cut(s) 484
MspR9I CCNGG 1 cut(s) 270
MunI CAATTG 1 cut(s) 12
MvaI CCWGG 1 cut(s) 270
MwoI GCNNNNNNNGC 2 cut(s) 97, 325
NcoI CCATGG 1 cut(s) 426
NdeII GATC 3 cut(s) 223, 862, 874
NlaIII CATG 4 cut(s) 328, 343, 410, 430
NlaIV GGNNCC 2 cut(s) 517, 615
NmuCI GTSAC 1 cut(s) 491
NsiI ATGCAT 1 cut(s) 633
NspV TTCGAA 2 cut(s) 559, 664
PfeI GAWTC 4 cut(s) 177, 310, 785, 886
PkrI GCNGC 1 cut(s) 90
PmaCI CACGTG 1 cut(s) 491
PmlI CACGTG 1 cut(s) 491
Ppu21I YACGTR 1 cut(s) 491
Psp6I CCWGG 1 cut(s) 268
PspCI CACGTG 1 cut(s) 491
PspGI CCWGG 1 cut(s) 268
PspN4I GGNNCC 2 cut(s) 517, 615
PspPI GGNCC 2 cut(s) 53, 430
PstI CTGCAG 1 cut(s) 26
PsuI RGATCY 1 cut(s) 862
RsaI GTAC 2 cut(s) 482, 851
RsaNI GTAC 2 cut(s) 481, 850
RseI CAYNNNNRTG 1 cut(s) 425
SaqAI TTAA 6 cut(s) 161, 255, 291, 371, 581, 917
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 3 cut(s) 223, 862, 874
Sau96I GGNCC 2 cut(s) 53, 430
ScaI AGTACT 1 cut(s) 851
ScrFI CCNGG 1 cut(s) 270
SduI GDGCHC 1 cut(s) 207
SfcI CTRYAG 1 cut(s) 22
SfuI TTCGAA 2 cut(s) 559, 664
SinI GGWCC 1 cut(s) 430
SmiMI CAYNNNNRTG 1 cut(s) 425
SmlI CTYRAG 3 cut(s) 434, 461, 580
SmoI CTYRAG 3 cut(s) 434, 461, 580
Sse9I AATT 4 cut(s) 12, 27, 329, 698
SsiI CCGC 1 cut(s) 782
SspI AATATT 2 cut(s) 230, 718
StyD4I CCNGG 1 cut(s) 268
StyI CCWWGG 3 cut(s) 210, 426, 866
TaaI ACNGT 3 cut(s) 187, 743, 775
TaiI ACGT 2 cut(s) 493, 576
TaqI TCGA 4 cut(s) 559, 664, 728, 788
TasI AATT 4 cut(s) 12, 27, 329, 698
TatI WGTACW 1 cut(s) 849
TfiI GAWTC 4 cut(s) 177, 310, 785, 886
Tru1I TTAA 6 cut(s) 161, 255, 291, 371, 581, 917
Tru9I TTAA 6 cut(s) 161, 255, 291, 371, 581, 917
TseFI GTSAC 1 cut(s) 491
TseI GCWGC 1 cut(s) 88
Tsp45I GTSAC 1 cut(s) 491
TspDTI ATGAA 8 cut(s) 167, 207, 255, 328, 577, 648, 664, 771
TspGWI ACGGA 1 cut(s) 844
Vha464I CTTAAG 1 cut(s) 580
VpaK11BI GGWCC 1 cut(s) 430
XapI RAATTY 2 cut(s) 27, 698
ZrmI AGTACT 1 cut(s) 851
Zsp2I ATGCAT 1 cut(s) 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.