Rw2G049610

Protein of unknown function (DUF1997)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0003399
Physical Location & Seq
Reverse (-)
77171324 .. 77172531
1208 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G049610.1

Sequence Viewer

Length: 735 bp
ATGGTTGGGGCAATTGCTGTCTGCAGAATTCTTGATAGAGGTATGCCTTCTCGGCCAGAAAAGCTGAAGGTGAAGCTGAAAAAGAAGCAGCAGGACAGGCATTGCCATTATGCAAAGGCGCTATTCAACTTGCTGAAAAAGGATGACCAGATGAAACCTTTAACCTTGCACCACAGAATCACTACTGTTGCCCTACTCTGTGAGTCCTCCAAGGCTTCATTTGATCAATATTTGGAGGATGAACAAAGGGTTATTAAAGCCCTATTTCCAGGCATAGAGGCAAGAAAACTTAACAAGAAAGCGTGGAGGATTCAAATGTCAACCATGCAATTCTTGTTCATATCTGTCTGCCTTGTATTATACATCAGTTTAAGATACAAGTCCAAAGGGAAAGACTACCCTCCTCATGTTCCTCATCACATCCCCATGGTCCTTGAGCTTGAAGCTACAAGGTGGGAACTTGAGGGCTTCCCCTATGAGTACCGGCCACGTGACTTTAGCATATCTGCTAAAGGAACCGTATATCCTGATAGAAAGCAAGGAACACAAAGCAGGCTTCGAACCCAGATTGACGTAATCTTAAGCTTCATTGTTTCACCTCTGCTTGGTTGGGTTCCACAAAGTGTTATGCATAGCCTCATAAAATCGCTGGTGAAGACTGTGATGGCGGATTCGACATCAAATGCCAGATTGCTTGAAGACTATGATGTATTCAAAACGAAGAATGTGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1997

Protein Analysis

244

Amino Acids

28.24

Weight (kDa)

9.73

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1997 PF09366 74 - 236 6.3e-25 Protein of unknown function (DUF1997)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 668
AcoI YGGCCR 2 cut(s) 53, 485
AcsI RAATTY 1 cut(s) 27
AcuI CTGAAG 1 cut(s) 86
AcvI CACGTG 1 cut(s) 491
AdeI CACNNNGTG 1 cut(s) 623
AfaI GTAC 1 cut(s) 482
AfiI CCNNNNNNNGG 1 cut(s) 605
AflII CTTAAG 1 cut(s) 580
AgsI TTSAA 5 cut(s) 127, 314, 443, 698, 715
AjnI CCWGG 1 cut(s) 268
AloI GAACNNNNNNTCC 2 cut(s) 508, 540
AluBI AGCT 5 cut(s) 64, 76, 439, 446, 585
AluI AGCT 5 cut(s) 64, 76, 439, 446, 585
AoxI GGCC 2 cut(s) 53, 485
ApeKI GCWGC 1 cut(s) 88
ApoI RAATTY 1 cut(s) 27
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 430
AsuHPI GGTGA 3 cut(s) 82, 588, 664
AsuII TTCGAA 1 cut(s) 559
AvaII GGWCC 1 cut(s) 430
BbrPI CACGTG 1 cut(s) 491
BbsI GAAGAC 2 cut(s) 662, 705
BbvI GCAGC 1 cut(s) 100
BccI CCATC 1 cut(s) 658
BciT130I CCWGG 1 cut(s) 270
BclI TGATCA 1 cut(s) 223
BfmI CTRYAG 1 cut(s) 22
BfoI RGCGCY 1 cut(s) 122
BfrI CTTAAG 1 cut(s) 580
BglI GCCNNNNNGGC 1 cut(s) 52
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
Bme1390I CCNGG 1 cut(s) 270
Bme18I GGWCC 1 cut(s) 430
BmgT120I GGNCC 1 cut(s) 430
BmiI GGNNCC 2 cut(s) 517, 615
BmrFI CCNGG 1 cut(s) 270
BpiI GAAGAC 2 cut(s) 662, 705
Bpu14I TTCGAA 1 cut(s) 559
BpuEI CTTGAG 2 cut(s) 455, 482
BsaAI YACGTR 1 cut(s) 491
BsaJI CCNNGG 2 cut(s) 210, 426
Bsc4I CCNNNNNNNGG 1 cut(s) 605
Bse118I RCCGGY 1 cut(s) 483
Bse3DI GCAATG 1 cut(s) 100
BseBI CCWGG 1 cut(s) 270
BseDI CCNNGG 2 cut(s) 210, 426
BseGI GGATG 3 cut(s) 148, 244, 420
BseLI CCNNNNNNNGG 1 cut(s) 605
BseMI GCAATG 1 cut(s) 100
BseRI GAGGAG 1 cut(s) 393
BseXI GCAGC 1 cut(s) 100
BshFI GGCC 2 cut(s) 55, 487
BsiSI CCGG 1 cut(s) 484
BslI CCNNNNNNNGG 1 cut(s) 605
BsnI GGCC 2 cut(s) 55, 487
Bsp119I TTCGAA 1 cut(s) 559
Bsp143I GATC 1 cut(s) 223
Bsp19I CCATGG 1 cut(s) 426
BspACI CCGC 1 cut(s) 668
BspANI GGCC 2 cut(s) 55, 487
BspLI GGNNCC 2 cut(s) 517, 615
BspMAI CTGCAG 1 cut(s) 26
BspT104I TTCGAA 1 cut(s) 559
BspTI CTTAAG 1 cut(s) 580
BsrDI GCAATG 1 cut(s) 100
BsrFI RCCGGY 1 cut(s) 483
BssAI RCCGGY 1 cut(s) 483
BssECI CCNNGG 2 cut(s) 210, 426
BssMI GATC 1 cut(s) 223
BssT1I CCWWGG 2 cut(s) 210, 426
Bst2UI CCWGG 1 cut(s) 270
Bst4CI ACNGT 3 cut(s) 187, 520, 661
BstAFI CTTAAG 1 cut(s) 580
BstBAI YACGTR 1 cut(s) 491
BstBI TTCGAA 1 cut(s) 559
BstC8I GCNNGC 1 cut(s) 554
BstDSI CCRYGG 1 cut(s) 426
BstF5I GGATG 3 cut(s) 148, 244, 420
BstH2I RGCGCY 1 cut(s) 122
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 1 cut(s) 226
BstMBI GATC 1 cut(s) 223
BstMWI GCNNNNNNNGC 3 cut(s) 52, 61, 97
BstNI CCWGG 1 cut(s) 270
BstSCI CCNGG 1 cut(s) 268
BstSFI CTRYAG 1 cut(s) 22
BstV1I GCAGC 1 cut(s) 100
BstV2I GAAGAC 2 cut(s) 662, 705
BsuRI GGCC 2 cut(s) 55, 487
BtgI CCRYGG 1 cut(s) 426
BtsCI GGATG 3 cut(s) 148, 244, 420
Cac8I GCNNGC 1 cut(s) 554
CfoI GCGC 1 cut(s) 121
Cfr10I RCCGGY 1 cut(s) 483
Cfr13I GGNCC 1 cut(s) 430
Csp6I GTAC 1 cut(s) 481
CviAII CATG 3 cut(s) 325, 407, 427
CviQI GTAC 1 cut(s) 481
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
DraIII CACNNNGTG 1 cut(s) 623
EaeI YGGCCR 2 cut(s) 53, 485
EciI GGCGGA 1 cut(s) 683
Eco130I CCWWGG 2 cut(s) 210, 426
Eco47I GGWCC 1 cut(s) 430
Eco57I CTGAAG 1 cut(s) 86
Eco72I CACGTG 1 cut(s) 491
EcoRI GAATTC 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 268
EcoT14I CCWWGG 2 cut(s) 210, 426
EcoT22I ATGCAT 1 cut(s) 633
ErhI CCWWGG 2 cut(s) 210, 426
FaeI CATG 3 cut(s) 328, 410, 430
FatI CATG 3 cut(s) 324, 406, 426
FbaI TGATCA 1 cut(s) 223
Fnu4HI GCNGC 1 cut(s) 89
FokI GGATG 3 cut(s) 155, 251, 407
Fsp4HI GCNGC 1 cut(s) 89
GlaI GCGC 1 cut(s) 120
GluI GCNGC 1 cut(s) 89
HaeII RGCGCY 1 cut(s) 122
HaeIII GGCC 2 cut(s) 55, 487
HapII CCGG 1 cut(s) 484
HhaI GCGC 1 cut(s) 121
Hin1II CATG 3 cut(s) 328, 410, 430
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HincII GTYRAC 1 cut(s) 321
HindII GTYRAC 1 cut(s) 321
HindIII AAGCTT 1 cut(s) 583
HinfI GANTC 4 cut(s) 177, 203, 310, 671
HpaII CCGG 1 cut(s) 484
HphI GGTGA 3 cut(s) 82, 588, 664
Hpy166II GTNNAC 1 cut(s) 321
Hpy188III TCNNGA 2 cut(s) 32, 527
Hpy8I GTNNAC 1 cut(s) 321
HpyAV CCTTC 2 cut(s) 57, 61
HpyCH4III ACNGT 3 cut(s) 187, 520, 661
HpyCH4IV ACGT 2 cut(s) 490, 573
HpyCH4V TGCA 5 cut(s) 24, 113, 169, 328, 631
HpyF10VI GCNNNNNNNGC 3 cut(s) 52, 61, 97
HpySE526I ACGT 2 cut(s) 490, 573
Hsp92II CATG 3 cut(s) 328, 410, 430
HspAI GCGC 1 cut(s) 119
Ksp22I TGATCA 1 cut(s) 223
Kzo9I GATC 1 cut(s) 223
Lsp1109I GCAGC 1 cut(s) 100
MaeII ACGT 2 cut(s) 490, 573
MaeIII GTNAC 1 cut(s) 491
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MboII GAAGA 3 cut(s) 667, 710, 733
MfeI CAATTG 1 cut(s) 12
MluCI AATT 3 cut(s) 12, 27, 329
MlyI GAGTC 1 cut(s) 212
Mph1103I ATGCAT 1 cut(s) 633
MseI TTAA 6 cut(s) 161, 255, 291, 371, 581, 733
MslI CAYNNNNRTG 1 cut(s) 425
MspCI CTTAAG 1 cut(s) 580
MspI CCGG 1 cut(s) 484
MspR9I CCNGG 1 cut(s) 270
MunI CAATTG 1 cut(s) 12
MvaI CCWGG 1 cut(s) 270
MwoI GCNNNNNNNGC 3 cut(s) 52, 61, 97
NcoI CCATGG 1 cut(s) 426
NdeII GATC 1 cut(s) 223
NlaIII CATG 3 cut(s) 328, 410, 430
NlaIV GGNNCC 2 cut(s) 517, 615
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 491
NsiI ATGCAT 1 cut(s) 633
NspV TTCGAA 1 cut(s) 559
PfeI GAWTC 3 cut(s) 177, 310, 671
PkrI GCNGC 1 cut(s) 90
PleI GAGTC 1 cut(s) 211
PmaCI CACGTG 1 cut(s) 491
PmlI CACGTG 1 cut(s) 491
PpsI GAGTC 1 cut(s) 211
Ppu21I YACGTR 1 cut(s) 491
Psp6I CCWGG 1 cut(s) 268
PspCI CACGTG 1 cut(s) 491
PspGI CCWGG 1 cut(s) 268
PspN4I GGNNCC 2 cut(s) 517, 615
PspPI GGNCC 1 cut(s) 430
PstI CTGCAG 1 cut(s) 26
RsaI GTAC 1 cut(s) 482
RsaNI GTAC 1 cut(s) 481
RseI CAYNNNNRTG 1 cut(s) 425
SaqAI TTAA 6 cut(s) 161, 255, 291, 371, 581, 733
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 1 cut(s) 223
Sau96I GGNCC 1 cut(s) 430
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 270
SfcI CTRYAG 1 cut(s) 22
SfuI TTCGAA 1 cut(s) 559
SinI GGWCC 1 cut(s) 430
SmiMI CAYNNNNRTG 1 cut(s) 425
SmlI CTYRAG 3 cut(s) 434, 461, 580
SmoI CTYRAG 3 cut(s) 434, 461, 580
Sse9I AATT 3 cut(s) 12, 27, 329
SsiI CCGC 1 cut(s) 668
SspI AATATT 1 cut(s) 230
StyD4I CCNGG 1 cut(s) 268
StyI CCWWGG 2 cut(s) 210, 426
TaaI ACNGT 3 cut(s) 187, 520, 661
TaiI ACGT 2 cut(s) 493, 576
TaqI TCGA 2 cut(s) 559, 674
TasI AATT 3 cut(s) 12, 27, 329
TfiI GAWTC 3 cut(s) 177, 310, 671
Tru1I TTAA 6 cut(s) 161, 255, 291, 371, 581, 733
Tru9I TTAA 6 cut(s) 161, 255, 291, 371, 581, 733
TseFI GTSAC 1 cut(s) 491
TseI GCWGC 1 cut(s) 88
Tsp45I GTSAC 1 cut(s) 491
TspDTI ATGAA 5 cut(s) 167, 207, 255, 328, 577
Vha464I CTTAAG 1 cut(s) 580
VpaK11BI GGWCC 1 cut(s) 430
XapI RAATTY 1 cut(s) 27
Zsp2I ATGCAT 1 cut(s) 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.