RchiOBHm_Chr2g0167251

Protein of unknown function (DUF1997)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003399
Physical Location & Seq
Reverse (-)
81831514 .. 81832503
990 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53505

Sequence Viewer

Length: 684 bp
ATGGTTGAGGTAGTTGCTTTATGCCAACCCTTGCTTTTTCTTGGTACTGGTATGCCTTTTCGCCCAGAAAAATTGAAGGTGAAGCTGAAGAAGGGCAGACGGCGCCACTATGCAAAAGCGGTATTGAACTCAGATCATAAGAAGCCTTTAACCGTAAACCTCAGTTCCACTATTGATTCACCTCTTTATGAGTCCCCTGAGGTTTCATTTGATCAATATTTGGAGGATGAACAGAGGGTTATTAAAGCACTTTTCCCAGACATTGAGGACCAGCAACTTAGCAAGAAAGAGTGGAGGATTCAAATGCCAACCATGCAAGCCTTGTTCCTGTCTATCTACTTTGCAATGTACATTAAGTTAAGATACAAATCCATGGGGAAAGACTACCCTCCTCATGTTCCTCATCACATTCCCAAAATCATTGAGCTTGAAATTACAAGATGGGAACTTGGGGGGATCCCTGAGGAGTACCAGCCGCTTGACTTGAGCCTCTCCCTCAAAGGAACCATATATCCTGATAGAAAGCAAGGAACAAAAAGCAGGCTTAGAGGTCAGGTTGACATAAATATGAGCTTTATTGTATCACCTCTGCTTGGTTGGATTCCTCATACTGTCGTGCAGAGCCTTGCAGAATCGGTTAGTGATTCCATTTCCCGAAAACTGCATATGTACTTGATGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1997

Protein Analysis

227

Amino Acids

26.28

Weight (kDa)

9.25

Isoelectric Point (pI)

55.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1997 PF09366 70 - 222 2.8e-22 Protein of unknown function (DUF1997)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 102
AciI CCGC 2 cut(s) 119, 476
AclWI GGATC 2 cut(s) 451, 464
AcuI CTGAAG 1 cut(s) 107
AcyI GRCGYC 1 cut(s) 103
AfaI GTAC 4 cut(s) 46, 350, 470, 671
AfiI CCNNNNNNNGG 1 cut(s) 593
AgsI TTSAA 4 cut(s) 76, 127, 302, 431
AloI GAACNNNNNNTCC 2 cut(s) 496, 528
AluBI AGCT 3 cut(s) 85, 427, 573
AluI AGCT 3 cut(s) 85, 427, 573
AlwI GGATC 2 cut(s) 451, 464
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 268
AsuHPI GGTGA 3 cut(s) 91, 171, 576
AvaII GGWCC 1 cut(s) 268
AxyI CCTNAGG 2 cut(s) 198, 462
BamHI GGATCC 1 cut(s) 456
BanI GGYRCC 1 cut(s) 102
BccI CCATC 1 cut(s) 435
BceAI ACGGC 1 cut(s) 116
BclI TGATCA 1 cut(s) 211
BfoI RGCGCY 1 cut(s) 106
BisI GCNGC 1 cut(s) 476
BlsI GCNGC 1 cut(s) 477
Bme18I GGWCC 1 cut(s) 268
BmgT120I GGNCC 1 cut(s) 268
BmiI GGNNCC 3 cut(s) 104, 458, 505
BpuEI CTTGAG 1 cut(s) 505
BsaBI GATNNNNATC 1 cut(s) 367
BsaHI GRCGYC 1 cut(s) 103
BsaJI CCNNGG 1 cut(s) 372
Bsc4I CCNNNNNNNGG 1 cut(s) 593
Bse1I ACTGG 1 cut(s) 52
Bse21I CCTNAGG 2 cut(s) 198, 462
Bse3DI GCAATG 1 cut(s) 351
Bse8I GATNNNNATC 1 cut(s) 367
BseDI CCNNGG 1 cut(s) 372
BseGI GGATG 1 cut(s) 232
BseJI GATNNNNATC 1 cut(s) 367
BseLI CCNNNNNNNGG 1 cut(s) 593
BseMI GCAATG 1 cut(s) 351
BseMII CTCAG 4 cut(s) 144, 175, 189, 453
BseNI ACTGG 1 cut(s) 52
BseRI GAGGAG 2 cut(s) 381, 479
BsgI GTGCAG 1 cut(s) 638
BshNI GGYRCC 1 cut(s) 102
BslFI GGGAC 1 cut(s) 178
BslI CCNNNNNNNGG 1 cut(s) 593
BsmFI GGGAC 1 cut(s) 178
Bsp1407I TGTACA 1 cut(s) 348
Bsp143I GATC 3 cut(s) 133, 211, 456
Bsp19I CCATGG 1 cut(s) 372
BspACI CCGC 2 cut(s) 119, 476
BspCNI CTCAG 4 cut(s) 143, 174, 190, 454
BspLI GGNNCC 3 cut(s) 104, 458, 505
BspPI GGATC 2 cut(s) 451, 464
BspT107I GGYRCC 1 cut(s) 102
BsrDI GCAATG 1 cut(s) 351
BsrGI TGTACA 1 cut(s) 348
BsrI ACTGG 1 cut(s) 52
BssECI CCNNGG 1 cut(s) 372
BssMI GATC 3 cut(s) 133, 211, 456
BssNI GRCGYC 1 cut(s) 103
BssT1I CCWWGG 1 cut(s) 372
Bst4CI ACNGT 2 cut(s) 154, 613
BstACI GRCGYC 1 cut(s) 103
BstAUI TGTACA 1 cut(s) 348
BstC8I GCNNGC 2 cut(s) 318, 542
BstDEI CTNAG 6 cut(s) 130, 161, 198, 278, 462, 545
BstDSI CCRYGG 1 cut(s) 372
BstF5I GGATG 1 cut(s) 232
BstH2I RGCGCY 1 cut(s) 106
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 3 cut(s) 136, 214, 459
BstMBI GATC 3 cut(s) 133, 211, 456
BstMWI GCNNNNNNNGC 2 cut(s) 102, 313
BstX2I RGATCY 1 cut(s) 456
BstYI RGATCY 1 cut(s) 456
Bsu36I CCTNAGG 2 cut(s) 198, 462
BtgI CCRYGG 1 cut(s) 372
BtsCI GGATG 1 cut(s) 232
Cac8I GCNNGC 2 cut(s) 318, 542
CfoI GCGC 1 cut(s) 105
Cfr13I GGNCC 1 cut(s) 268
Csp6I GTAC 4 cut(s) 45, 349, 469, 670
CviAII CATG 3 cut(s) 313, 373, 395
CviJI RGCY 9 cut(s) 85, 145, 320, 427, 475, 489, 544, 573, 624
CviKI_1 RGCY 9 cut(s) 85, 145, 320, 427, 475, 489, 544, 573, 624
CviQI GTAC 4 cut(s) 45, 349, 469, 670
DdeI CTNAG 6 cut(s) 130, 161, 198, 278, 462, 545
DinI GGCGCC 1 cut(s) 104
DpnI GATC 3 cut(s) 135, 213, 458
DpnII GATC 3 cut(s) 133, 211, 456
Eco130I CCWWGG 1 cut(s) 372
Eco47I GGWCC 1 cut(s) 268
Eco57I CTGAAG 1 cut(s) 107
Eco81I CCTNAGG 2 cut(s) 198, 462
EcoT14I CCWWGG 1 cut(s) 372
EgeI GGCGCC 1 cut(s) 104
EheI GGCGCC 1 cut(s) 104
ErhI CCWWGG 1 cut(s) 372
FaeI CATG 3 cut(s) 316, 376, 398
FaqI GGGAC 1 cut(s) 178
FatI CATG 3 cut(s) 312, 372, 394
FauNDI CATATG 1 cut(s) 666
FbaI TGATCA 1 cut(s) 211
Fnu4HI GCNGC 1 cut(s) 476
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 1 cut(s) 476
GlaI GCGC 1 cut(s) 104
GluI GCNGC 1 cut(s) 476
HaeII RGCGCY 1 cut(s) 106
HhaI GCGC 1 cut(s) 105
Hin1I GRCGYC 1 cut(s) 103
Hin1II CATG 3 cut(s) 316, 376, 398
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HincII GTYRAC 1 cut(s) 559
HindII GTYRAC 1 cut(s) 559
HinfI GANTC 6 cut(s) 176, 191, 298, 601, 632, 644
HphI GGTGA 3 cut(s) 91, 171, 576
Hpy166II GTNNAC 2 cut(s) 157, 559
Hpy188I TCNGA 1 cut(s) 133
Hpy188III TCNNGA 2 cut(s) 515, 654
Hpy8I GTNNAC 2 cut(s) 157, 559
HpyAV CCTTC 2 cut(s) 70, 85
HpyCH4III ACNGT 2 cut(s) 154, 613
HpyCH4V TGCA 6 cut(s) 113, 316, 344, 619, 629, 664
HpyF10VI GCNNNNNNNGC 2 cut(s) 102, 313
HpyF3I CTNAG 6 cut(s) 130, 161, 198, 278, 462, 545
Hsp92I GRCGYC 1 cut(s) 103
Hsp92II CATG 3 cut(s) 316, 376, 398
HspAI GCGC 1 cut(s) 103
KasI GGCGCC 1 cut(s) 102
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 3 cut(s) 133, 211, 456
MalI GATC 3 cut(s) 135, 213, 458
MboI GATC 3 cut(s) 133, 211, 456
MboII GAAGA 1 cut(s) 100
MflI RGATCY 1 cut(s) 456
MluCI AATT 2 cut(s) 71, 432
Mly113I GGCGCC 1 cut(s) 103
MlyI GAGTC 1 cut(s) 200
MmeI TCCRAC 1 cut(s) 578
MseI TTAA 4 cut(s) 149, 243, 354, 359
MslI CAYNNNNRTG 1 cut(s) 566
MwoI GCNNNNNNNGC 2 cut(s) 102, 313
NarI GGCGCC 1 cut(s) 103
NcoI CCATGG 1 cut(s) 372
NdeI CATATG 1 cut(s) 666
NdeII GATC 3 cut(s) 133, 211, 456
NlaIII CATG 3 cut(s) 316, 376, 398
NlaIV GGNNCC 3 cut(s) 104, 458, 505
PfeI GAWTC 5 cut(s) 176, 298, 601, 632, 644
PkrI GCNGC 1 cut(s) 477
PleI GAGTC 1 cut(s) 199
PluTI GGCGCC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 199
PspN4I GGNNCC 3 cut(s) 104, 458, 505
PspPI GGNCC 1 cut(s) 268
PsuI RGATCY 1 cut(s) 456
RsaI GTAC 4 cut(s) 46, 350, 470, 671
RsaNI GTAC 4 cut(s) 45, 349, 469, 670
RseI CAYNNNNRTG 1 cut(s) 566
SaqAI TTAA 4 cut(s) 149, 243, 354, 359
SatI GCNGC 1 cut(s) 476
Sau3AI GATC 3 cut(s) 133, 211, 456
Sau96I GGNCC 1 cut(s) 268
SchI GAGTC 1 cut(s) 200
SfoI GGCGCC 1 cut(s) 104
SinI GGWCC 1 cut(s) 268
SmiMI CAYNNNNRTG 1 cut(s) 566
SmlI CTYRAG 1 cut(s) 484
SmoI CTYRAG 1 cut(s) 484
Sse9I AATT 2 cut(s) 71, 432
SsiI CCGC 2 cut(s) 119, 476
SspDI GGCGCC 1 cut(s) 102
SspI AATATT 1 cut(s) 218
StyI CCWWGG 1 cut(s) 372
TaaI ACNGT 2 cut(s) 154, 613
TasI AATT 2 cut(s) 71, 432
TatI WGTACW 2 cut(s) 348, 669
TauI GCSGC 1 cut(s) 478
TfiI GAWTC 5 cut(s) 176, 298, 601, 632, 644
Tru1I TTAA 4 cut(s) 149, 243, 354, 359
Tru9I TTAA 4 cut(s) 149, 243, 354, 359
TspDTI ATGAA 2 cut(s) 195, 243
VpaK11BI GGWCC 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.