Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0003399

Physical Location & Seq

Genomic Coordinates Forward (+)

2817716 .. 2819225

Gene Structure 1510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g04640.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGGTGAGTTTGCTGCTGCTGGTGGTGGTCTTTTTTCTGTAGGGCACTGCCAACCCTCGTTCTGTCCTGGTAGAGGAATGTGTTTCGGGCCGGAAAATGTGAAGGGTAAGCCGATCAAGAAGCAGGAGAGGATTTTCCGTGCCGAGGCAGTGTTAAAATTGAAGAAGACGAAGCAGCATAGGGAGCCTTTAACCTTCTACTTCAGATATACATTTGATGCTCCTCTCAATGAGTCCCCTGTGGCTTCATTTGATCAATACTTGGACGATGAACACAGGGTTATTAAAGCGATTTTTCCAGACACAGCGAAAACCCAAACAAACGAGGAAGAGTGGAGAATTCACATGCCGGCCATGCAAGTCTTGTTCCTGTCTGTCTACCTTGCATTATATGTTAAGTTGAGATGCAAATCCATGGGGAAAGACTACCCTCCTCATGTTCCTCACCACATCTCCAAGATTATTGAGCTTGACATTACTAGATGGGAAATCCGAGGCATTGCTGGGTATGATCCAAGTGACATCAACCTCAACGTCAAAGGAACCATATTTTCAGATAGACAAGGAACACAAAGCTGGCTCAGAAACATATTCGACATAAACTTAAGCTTCATTGTACCACCTCTCCTCGCTTGGGTCCCGGACAATGCCATGCAAAGTATTACAGAATCGCTCGTCAAGACGGTGATGACCGATCTGAAGTCGAATGCGATATTGCTAGCAGTAGTAGATTATGAGAAGTTCAAAAAAGAGAAGCTCAAAACTGCAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1997

Protein Analysis

258

Amino Acids

29.29

Weight (kDa)

8.9

Isoelectric Point (pI)

37.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39520 AT5G39530 AT5G39530
fragaria_vesca	FvH4_6g48000 FvH4_6g48001
malus_domestica	MD09G1055000.v1.1 MD09G1055400.v1.1 MD17G1053100.v1.1
prunus_persica	Prupe.3G263500_v2.0.a1
pyrus_communis	pycom111g04640
rosa_chinensis	RchiOBHm_Chr2g0167241 RchiOBHm_Chr2g0167251 RchiOBHm_Chr2g0167291
rosa_laevigata	RLG00000021702 RLG00000021703
rosa_multiflora	Rmu_sc0015771.1_g000011 Rmu_sc0030724.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083640 Rroxscaffold_2G00083650 Rroxscaffold_2G00083660
rosa_rugosa	Rorug02G0529200 Rorug02G0529200 Rorug02G0529300
rosa_samantha	Rh2AG596200 Rh2BG607200 Rh2BG607300 Rh2BG607500 Rh2CG578200 Rh2CG578300 Rh2DG618800 Rh2DG618900 Rh2DG619000
rosa_wichuraiana	Rw0G018240 Rw0G018250 Rw2G049610 Rw2G049620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	378
AclWI	GGATC	1 cut(s)	506
AcoI	YGGCCR	1 cut(s)	351
AcsI	RAATTY	1 cut(s)	339
AcuI	CTGAAG	2 cut(s)	187, 719
AfaI	GTAC	1 cut(s)	618
AfiI	CCNNNNNNNGG	3 cut(s)	74, 145, 634
AflII	CTTAAG	1 cut(s)	604
AgsI	TTSAA	2 cut(s)	163, 745
AjnI	CCWGG	1 cut(s)	67
AluBI	AGCT	4 cut(s)	469, 576, 609, 757
AluI	AGCT	4 cut(s)	469, 576, 609, 757
AlwI	GGATC	1 cut(s)	506
AoxI	GGCC	2 cut(s)	89, 351
ApeKI	GCWGC	3 cut(s)	14, 17, 175
ApoI	RAATTY	1 cut(s)	339
AspS9I	GGNCC	2 cut(s)	89, 637
AsuC2I	CCSGG	1 cut(s)	641
AsuHPI	GGTGA	3 cut(s)	17, 437, 697
AsuNHI	GCTAGC	1 cut(s)	718
AvaII	GGWCC	1 cut(s)	637
BaeGI	GKGCMC	1 cut(s)	48
BbsI	GAAGAC	1 cut(s)	173
BbvI	GCAGC	2 cut(s)	4, 187
BccI	CCATC	1 cut(s)	477
BciT130I	CCWGG	1 cut(s)	69
BclI	TGATCA	1 cut(s)	253
BcnI	CCSGG	1 cut(s)	641
BfaI	CTAG	2 cut(s)	480, 719
BfmI	CTRYAG	2 cut(s)	39, 765
BfrI	CTTAAG	1 cut(s)	604
BisI	GCNGC	3 cut(s)	15, 18, 176
BlsI	GCNGC	3 cut(s)	16, 19, 177
Bme1390I	CCNGG	2 cut(s)	69, 641
Bme18I	GGWCC	1 cut(s)	637
BmgT120I	GGNCC	2 cut(s)	89, 637
BmiI	GGNNCC	4 cut(s)	186, 544, 638, 639
BmrFI	CCNGG	2 cut(s)	69, 641
BmsI	GCATC	2 cut(s)	208, 395
BmtI	GCTAGC	1 cut(s)	722
BpiI	GAAGAC	1 cut(s)	173
BpuMI	CCSGG	1 cut(s)	641
BsaBI	GATNNNNATC	1 cut(s)	409
BsaJI	CCNNGG	3 cut(s)	144, 414, 493
BsaXI	ACNNNNNCTCC	4 cut(s)	437, 467, 609, 639
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 145, 634
Bse118I	RCCGGY	1 cut(s)	349
Bse3DI	GCAATG	1 cut(s)	498
Bse8I	GATNNNNATC	1 cut(s)	409
BseBI	CCWGG	1 cut(s)	69
BseDI	CCNNGG	3 cut(s)	144, 414, 493
BseJI	GATNNNNATC	1 cut(s)	409
BseLI	CCNNNNNNNGG	3 cut(s)	74, 145, 634
BseMI	GCAATG	1 cut(s)	498
BseMII	CTCAG	1 cut(s)	595
BseRI	GAGGAG	3 cut(s)	213, 423, 617
BseSI	GKGCMC	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	4, 187
BseYI	CCCAGC	1 cut(s)	503
BshFI	GGCC	2 cut(s)	91, 353
BsiSI	CCGG	3 cut(s)	92, 350, 641
BslFI	GGGAC	2 cut(s)	220, 623
BslI	CCNNNNNNNGG	3 cut(s)	74, 145, 634
BsmFI	GGGAC	2 cut(s)	220, 623
BsmI	GAATGC	1 cut(s)	712
BsnI	GGCC	2 cut(s)	91, 353
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	4 cut(s)	114, 253, 511, 694
Bsp19I	CCATGG	1 cut(s)	414
BspANI	GGCC	2 cut(s)	91, 353
BspCNI	CTCAG	1 cut(s)	594
BspLI	GGNNCC	4 cut(s)	186, 544, 638, 639
BspMAI	CTGCAG	1 cut(s)	769
BspOI	GCTAGC	1 cut(s)	722
BspPI	GGATC	1 cut(s)	506
BspTI	CTTAAG	1 cut(s)	604
BsrDI	GCAATG	1 cut(s)	498
BsrFI	RCCGGY	1 cut(s)	349
BssAI	RCCGGY	1 cut(s)	349
BssECI	CCNNGG	3 cut(s)	144, 414, 493
BssMI	GATC	4 cut(s)	114, 253, 511, 694
BssT1I	CCWWGG	1 cut(s)	414
Bst2UI	CCWGG	1 cut(s)	69
Bst4CI	ACNGT	1 cut(s)	685
Bst6I	CTCTTC	1 cut(s)	324
BstAFI	CTTAAG	1 cut(s)	604
BstC8I	GCNNGC	3 cut(s)	351, 578, 720
BstDEI	CTNAG	1 cut(s)	581
BstDSI	CCRYGG	1 cut(s)	414
BstENI	CCTNNNNNAGG	1 cut(s)	72
BstKTI	GATC	4 cut(s)	117, 256, 514, 697
BstMBI	GATC	4 cut(s)	114, 253, 511, 694
BstMWI	GCNNNNNNNGC	2 cut(s)	184, 355
BstNI	CCWGG	1 cut(s)	69
BstNSI	RCATGY	1 cut(s)	349
BstSCI	CCNGG	2 cut(s)	67, 639
BstSFI	CTRYAG	2 cut(s)	39, 765
BstSLI	GKGCMC	1 cut(s)	48
BstV1I	GCAGC	2 cut(s)	4, 187
BstV2I	GAAGAC	1 cut(s)	173
BsuRI	GGCC	2 cut(s)	91, 353
BtgI	CCRYGG	1 cut(s)	414
BtsI	GCAGTG	2 cut(s)	46, 156
BtsIMutI	CAGTG	2 cut(s)	46, 156
Cac8I	GCNNGC	3 cut(s)	351, 578, 720
Cfr10I	RCCGGY	1 cut(s)	349
Cfr13I	GGNCC	2 cut(s)	89, 637
Csp6I	GTAC	1 cut(s)	617
CviAII	CATG	5 cut(s)	346, 355, 415, 437, 652
CviQI	GTAC	1 cut(s)	617
DdeI	CTNAG	1 cut(s)	581
DpnI	GATC	4 cut(s)	116, 255, 513, 696
DpnII	GATC	4 cut(s)	114, 253, 511, 694
EaeI	YGGCCR	1 cut(s)	351
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Eco130I	CCWWGG	1 cut(s)	414
Eco47I	GGWCC	1 cut(s)	637
Eco57I	CTGAAG	2 cut(s)	187, 719
EcoNI	CCTNNNNNAGG	1 cut(s)	72
EcoO109I	RGGNCCY	1 cut(s)	637
EcoRI	GAATTC	1 cut(s)	339
EcoRII	CCWGG	1 cut(s)	67
EcoT14I	CCWWGG	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	414
FaeI	CATG	5 cut(s)	349, 358, 418, 440, 655
FaqI	GGGAC	2 cut(s)	220, 623
FatI	CATG	5 cut(s)	345, 354, 414, 436, 651
FbaI	TGATCA	1 cut(s)	253
FblI	GTMKAC	1 cut(s)	378
Fnu4HI	GCNGC	3 cut(s)	15, 18, 176
Fsp4HI	GCNGC	3 cut(s)	15, 18, 176
FspBI	CTAG	2 cut(s)	480, 719
GluI	GCNGC	3 cut(s)	15, 18, 176
GsaI	CCCAGC	1 cut(s)	507
HaeIII	GGCC	2 cut(s)	91, 353
HapII	CCGG	3 cut(s)	92, 350, 641
Hin1II	CATG	5 cut(s)	349, 358, 418, 440, 655
HindIII	AAGCTT	1 cut(s)	607
HinfI	GANTC	2 cut(s)	233, 668
HpaII	CCGG	3 cut(s)	92, 350, 641
HphI	GGTGA	3 cut(s)	17, 437, 697
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188I	TCNGA	5 cut(s)	206, 494, 556, 584, 699
Hpy188III	TCNNGA	3 cut(s)	118, 299, 679
Hpy8I	GTNNAC	1 cut(s)	379
HpyAV	CCTTC	2 cut(s)	97, 205
HpyCH4III	ACNGT	1 cut(s)	685
HpyCH4IV	ACGT	1 cut(s)	534
HpyCH4V	TGCA	5 cut(s)	358, 386, 408, 655, 767
HpyF10VI	GCNNNNNNNGC	2 cut(s)	184, 355
HpyF3I	CTNAG	1 cut(s)	581
HpySE526I	ACGT	1 cut(s)	534
Hsp92II	CATG	5 cut(s)	349, 358, 418, 440, 655
KflI	GGGWCCC	1 cut(s)	637
KroI	GCCGGC	1 cut(s)	349
KroNI	GCCGGC	1 cut(s)	351
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	4 cut(s)	114, 253, 511, 694
LmnI	GCTCC	2 cut(s)	184, 226
Lsp1109I	GCAGC	2 cut(s)	4, 187
LweI	GCATC	2 cut(s)	208, 395
MaeI	CTAG	2 cut(s)	480, 719
MaeII	ACGT	1 cut(s)	534
MaeIII	GTNAC	1 cut(s)	518
MalI	GATC	4 cut(s)	116, 255, 513, 696
MboI	GATC	4 cut(s)	114, 253, 511, 694
MboII	GAAGA	3 cut(s)	175, 178, 341
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	2 cut(s)	158, 339
MlyI	GAGTC	1 cut(s)	242
MroNI	GCCGGC	1 cut(s)	349
MseI	TTAA	5 cut(s)	155, 191, 285, 396, 605
MspCI	CTTAAG	1 cut(s)	604
MspI	CCGG	3 cut(s)	92, 350, 641
MspR9I	CCNGG	2 cut(s)	69, 641
Mva1269I	GAATGC	1 cut(s)	712
MvaI	CCWGG	1 cut(s)	69
MwoI	GCNNNNNNNGC	2 cut(s)	184, 355
NaeI	GCCGGC	1 cut(s)	351
NciI	CCSGG	1 cut(s)	641
NcoI	CCATGG	1 cut(s)	414
NdeII	GATC	4 cut(s)	114, 253, 511, 694
NgoMIV	GCCGGC	1 cut(s)	349
NheI	GCTAGC	1 cut(s)	718
NlaIII	CATG	5 cut(s)	349, 358, 418, 440, 655
NlaIV	GGNNCC	4 cut(s)	186, 544, 638, 639
NmeAIII	GCCGAG	1 cut(s)	169
NmuCI	GTSAC	1 cut(s)	518
NspI	RCATGY	1 cut(s)	349
PctI	GAATGC	1 cut(s)	712
PdiI	GCCGGC	1 cut(s)	351
PfeI	GAWTC	1 cut(s)	668
PfoI	TCCNGGA	1 cut(s)	639
PkrI	GCNGC	3 cut(s)	16, 19, 177
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
PpuMI	RGGWCCY	1 cut(s)	637
Psp5II	RGGWCCY	1 cut(s)	637
Psp6I	CCWGG	1 cut(s)	67
PspFI	CCCAGC	1 cut(s)	503
PspGI	CCWGG	1 cut(s)	67
PspN4I	GGNNCC	4 cut(s)	186, 544, 638, 639
PspPI	GGNCC	2 cut(s)	89, 637
PspPPI	RGGWCCY	1 cut(s)	637
PstI	CTGCAG	1 cut(s)	769
RsaI	GTAC	1 cut(s)	618
RsaNI	GTAC	1 cut(s)	617
SaqAI	TTAA	5 cut(s)	155, 191, 285, 396, 605
SatI	GCNGC	3 cut(s)	15, 18, 176
Sau3AI	GATC	4 cut(s)	114, 253, 511, 694
Sau96I	GGNCC	2 cut(s)	89, 637
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	2 cut(s)	69, 641
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	9 cut(s)	197, 384, 471, 531, 537, 578, 611, 625, 759
SfaNI	GCATC	2 cut(s)	208, 395
SfcI	CTRYAG	2 cut(s)	39, 765
SinI	GGWCC	1 cut(s)	637
SmlI	CTYRAG	1 cut(s)	604
SmoI	CTYRAG	1 cut(s)	604
Sse9I	AATT	2 cut(s)	158, 339
SspMI	CTAG	2 cut(s)	480, 719
StyD4I	CCNGG	2 cut(s)	67, 639
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	1 cut(s)	685
TaiI	ACGT	1 cut(s)	537
TaqI	TCGA	2 cut(s)	594, 704
TaqII	GACCGA	1 cut(s)	707
TasI	AATT	2 cut(s)	158, 339
TfiI	GAWTC	1 cut(s)	668
Tru1I	TTAA	5 cut(s)	155, 191, 285, 396, 605
Tru9I	TTAA	5 cut(s)	155, 191, 285, 396, 605
TscAI	CASTG	2 cut(s)	53, 156
TseFI	GTSAC	1 cut(s)	518
TseI	GCWGC	3 cut(s)	14, 17, 175
Tsp45I	GTSAC	1 cut(s)	518
TspDTI	ATGAA	3 cut(s)	237, 285, 601
TspGWI	ACGGA	1 cut(s)	128
TspRI	CASTG	2 cut(s)	53, 156
Vha464I	CTTAAG	1 cut(s)	604
VpaK11BI	GGWCC	1 cut(s)	637
XagI	CCTNNNNNAGG	1 cut(s)	72
XapI	RAATTY	1 cut(s)	339
XceI	RCATGY	1 cut(s)	349
XmiI	GTMKAC	1 cut(s)	378
XspI	CTAG	2 cut(s)	480, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.