Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007991

Physical Location & Seq

Genomic Coordinates Forward (+)

8968314 .. 8971309

Gene Structure 2996 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47097

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGGCGAGTTTTGAGGGGAGGGTTTCGTTTTCGTCCCTTCCTAAGATAGAGAAAAGCAATACCCAATTCCACTATGCTGATGATGACTTCATCGATGCCGAATGGCCTGTGCACGAAGGCGGAGGCGGTATGACTTACCCATCAGTTTCAAAAGCTGAGAAGCAAGATTATTCGTATCAATTTCCCCCGGAATTTGATAGTTTTGGAGATGACACTGGATATGATTCTAGCCAGGAGCATTGTGGTTCTGGGGAGATGGGTGGGCCGCCGGAGGTGAACTTGAAGAATGTGTTGACCGGGATGATTGCCATTGTGACTGGCCGGAACAAAGTTGCTCCCGGTGAAACACCTGAGCAGCAGCAGCAGCAACCCACTTCGAATGTTTCATTTCTCGGCGCAGAAAAGAATGGTGATACTTACTTGCATTCCTCGGTTTACACGCCCAGTGCCCCGCCCCTTTTTGAGCCGGTTGCCTTTAATTATAGTGCATACAAGGAAATTTTGGAGGCTGAACCCCCTGAATGGCTTCCTGACAGTTCGAGTATAGTTTGCATGCAGTGCACTTCTCCTTTCACTGCCTTAACTCGTGGGAGACATCATTGCCGATTCTGTGGGGGGATTTTCTGCAGAACATGTAGTAAAGGAAGGTGCTTGTTGCCTGTCAAGTTTAGGGAGAGGAATCCGCAGAGGGTCTGCGATGCCTGCTATGACAGGTTGGATCCTTTGCAGGGTATTCTTATTAACAGCATTAGCAATGCTGCACAAGCAGCAAAGCATGACGTCATGGATTGGACATGCACAAGAGGATGGTTAAATCTTCCTGTTGGTTTCTCCATGGAACAAGAGATATACAAAGCAACCAACACATTGAGAAGTTACTCCCAGGTTTCTAGGCTGAATCCGGAGAGGTCCATACCCTTGGCTGTTCTCAAAGGAGCCAAAGGCCTGGCAATCCTAACCGTTGCTAAAGCTGGTGCACTACTTTCTTACAAACTTGGTACTGGTTTGGTGGTTTCTCGAAGGTCAGATGGATCATGGTCTGCTCCATCAGCCATATGTTCTGTTGGCTTAGGATGGGGTGCACAGATTGGGGGTGAGCTCATGGACTTCATCATTGTCCTTCCTGATATAAAAGCTGTGAAAACCTTTTGTAGTCGCATGCATTTCTCTCTTGGTGCTGGGTGTAGTGCTGCAGCAGGACCTATTGGTAGAGTACTAGAAGCAGATATGCGTGCTGGAGACAGGGGTTCTGGAATGTGCTATACATACAGTTGTAGCAAAGGTGCATTTGTAGGAGTATCATTAGAAGGAAATGTTGTTGCCACAAGGATGGATACAAATCTTCAATTTTATGGCGACCCTTACCTGACGACTAATGATATACTTCTTGGGACAGTGGAAAGACCAAAGGCCGCGGAGCCCCTGTATGGGGCCCTTCAATCCCTCTACTCCAGTCTACAGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001726 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005886 GO:0005938 GO:0006810 GO:0006897 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0008289 GO:0009987 GO:0015629 GO:0016020 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030479 GO:0030863 GO:0030864 GO:0031252 GO:0031253 GO:0031256 GO:0031344 GO:0032587 GO:0035091 GO:0042995 GO:0043167 GO:0043168 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044459 GO:0044463 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051015 GO:0051017 GO:0051128 GO:0051179 GO:0051234 GO:0051641 GO:0051666 GO:0060491 GO:0061572 GO:0061645 GO:0065007 GO:0071840 GO:0071944 GO:0097435 GO:0098590 GO:0098657 GO:0099568 GO:0120025 GO:0120032 GO:0120035 GO:0120038 GO:1900027

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FYVE Ysc84

Protein Analysis

488

Amino Acids

52.88

Weight (kDa)

5.71

Isoelectric Point (pI)

43.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FYVE	PF01363	174 - 239	2e-20	FYVE zinc finger
Ysc84	PF04366	356 - 481	3.3e-38	Las17-binding protein actin regulator

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43230
fragaria_vesca	FvH4_1g09450 FvH4_1g09450
malus_domestica	MD02G1102900.v1.1 MD15G1224000.v1.1
prunus_persica	Prupe.7G191500_v2.0.a1 Prupe.7G191500_v2.0.a1 Prupe.7G191500_v2.0.a1 Prupe.7G191500_v2.0.a1
pyrus_communis	pycom02g08060 pycom15g19820
rosa_chinensis	RchiOBHm_Chr2g0096001 RchiOBHm_Chr2g0096261
rosa_laevigata	RLG00000016616 RLG00000016630
rosa_multiflora	Rmu_co8311399.1_g000001 Rmu_sc0002497.1_g000013
rosa_roxburghii	Rroxscaffold_2G00145870
rosa_rugosa	Rorug02G0055800
rosa_samantha	Rh2AG103700 Rh2BG105200 Rh2CG107700 Rh2DG105600
rosa_wichuraiana	Rw2G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	783
AccI	GTMKAC	1 cut(s)	1456
AccII	CGCG	1 cut(s)	1415
AccIII	TCCGGA	1 cut(s)	901
AciI	CCGC	7 cut(s)	120, 126, 266, 452, 683, 1413, 1415
AclWI	GGATC	3 cut(s)	713, 726, 1039
AcoI	YGGCCR	1 cut(s)	319
AcsI	RAATTY	2 cut(s)	191, 498
AcyI	GRCGYC	1 cut(s)	780
AfaI	GTAC	2 cut(s)	1000, 1215
AfiI	CCNNNNNNNGG	5 cut(s)	522, 728, 1427, 1428, 1429
AflIII	ACRYGT	1 cut(s)	632
AgsI	TTSAA	4 cut(s)	150, 283, 1346, 1439
AjnI	CCWGG	3 cut(s)	231, 882, 945
AluBI	AGCT	4 cut(s)	155, 971, 1099, 1136
AluI	AGCT	4 cut(s)	155, 971, 1099, 1136
Alw21I	GWGCWC	5 cut(s)	114, 563, 979, 1084, 1101
Alw26I	GTCTC	2 cut(s)	586, 1233
Alw44I	GTGCAC	4 cut(s)	110, 559, 975, 1080
AlwI	GGATC	3 cut(s)	713, 726, 1039
Aor13HI	TCCGGA	1 cut(s)	901
AoxI	GGCC	6 cut(s)	104, 263, 319, 943, 1410, 1431
ApaI	GGGCCC	1 cut(s)	1435
ApaLI	GTGCAC	4 cut(s)	110, 559, 975, 1080
ApeKI	GCWGC	8 cut(s)	355, 358, 361, 364, 758, 767, 1190, 1193
ApoI	RAATTY	2 cut(s)	191, 498
Asp700I	GAANNNNTTC	1 cut(s)	525
AspLEI	GCGC	1 cut(s)	398
AspS9I	GGNCC	5 cut(s)	263, 909, 1199, 1431, 1432
AsuC2I	CCSGG	3 cut(s)	188, 298, 339
AsuHPI	GGTGA	4 cut(s)	286, 353, 422, 1106
AsuII	TTCGAA	1 cut(s)	377
AvaII	GGWCC	2 cut(s)	909, 1199
BaeGI	GKGCMC	6 cut(s)	114, 451, 563, 979, 1084, 1435
BamHI	GGATCC	1 cut(s)	718
BanII	GRGCYC	3 cut(s)	1101, 1422, 1435
BauI	CACGAG	1 cut(s)	585
Bbv12I	GWGCWC	5 cut(s)	114, 563, 979, 1084, 1101
BbvI	GCAGC	8 cut(s)	367, 370, 373, 376, 745, 779, 1177, 1205
BccI	CCATC	7 cut(s)	148, 250, 801, 1022, 1054, 1068, 1324
BciT130I	CCWGG	3 cut(s)	233, 884, 947
BciVI	GTATCC	1 cut(s)	1327
BcnI	CCSGG	3 cut(s)	188, 298, 339
BcoDI	GTCTC	2 cut(s)	586, 1233
BfaI	CTAG	4 cut(s)	228, 891, 1217, 1465
BfmI	CTRYAG	3 cut(s)	625, 1191, 1457
BfuI	GTATCC	1 cut(s)	1327
BmcAI	AGTACT	1 cut(s)	1215
Bme1390I	CCNGG	6 cut(s)	188, 233, 298, 339, 884, 947
Bme18I	GGWCC	2 cut(s)	909, 1199
BmgT120I	GGNCC	5 cut(s)	263, 909, 1199, 1431, 1432
BmiI	GGNNCC	5 cut(s)	720, 937, 1419, 1432, 1433
BmrFI	CCNGG	6 cut(s)	188, 233, 298, 339, 884, 947
BmrI	ACTGGG	1 cut(s)	438
BmsI	GCATC	2 cut(s)	85, 688
BmuI	ACTGGG	1 cut(s)	438
BpmI	CTGGAG	2 cut(s)	1257, 1435
Bpu10I	CCTNAGC	2 cut(s)	351, 1069
Bpu14I	TTCGAA	1 cut(s)	377
BpuMI	CCSGG	3 cut(s)	188, 298, 339
Bsa29I	ATCGAT	1 cut(s)	93
BsaBI	GATNNNNATC	1 cut(s)	1338
BsaHI	GRCGYC	1 cut(s)	780
BsaJI	CCNNGG	6 cut(s)	186, 429, 834, 882, 918, 1413
BsaWI	WCCGGW	1 cut(s)	901
BsaXI	ACNNNNNCTCC	2 cut(s)	1409, 1439
Bsc4I	CCNNNNNNNGG	5 cut(s)	522, 728, 1427, 1428, 1429
Bse118I	RCCGGY	1 cut(s)	466
Bse1I	ACTGG	5 cut(s)	220, 322, 444, 1006, 1452
Bse3DI	GCAATG	2 cut(s)	598, 760
Bse8I	GATNNNNATC	1 cut(s)	1338
BseAI	TCCGGA	1 cut(s)	901
BseBI	CCWGG	3 cut(s)	233, 884, 947
BseCI	ATCGAT	1 cut(s)	93
BseDI	CCNNGG	6 cut(s)	186, 429, 834, 882, 918, 1413
BseGI	GGATG	4 cut(s)	306, 812, 1079, 1335
BseJI	GATNNNNATC	1 cut(s)	1338
BseLI	CCNNNNNNNGG	5 cut(s)	522, 728, 1427, 1428, 1429
BseMI	GCAATG	2 cut(s)	598, 760
BseMII	CTCAG	2 cut(s)	147, 342
BseNI	ACTGG	5 cut(s)	220, 322, 444, 1006, 1452
BseSI	GKGCMC	6 cut(s)	114, 451, 563, 979, 1084, 1435
BseXI	GCAGC	8 cut(s)	367, 370, 373, 376, 745, 779, 1177, 1205
BseYI	CCCAGC	1 cut(s)	1178
BsgI	GTGCAG	1 cut(s)	744
Bsh1236I	CGCG	1 cut(s)	1415
BshFI	GGCC	6 cut(s)	106, 265, 321, 945, 1412, 1433
BshVI	ATCGAT	1 cut(s)	93
BsiHKAI	GWGCWC	5 cut(s)	114, 563, 979, 1084, 1101
BsiSI	CCGG	7 cut(s)	188, 269, 297, 322, 339, 467, 902
BslFI	GGGAC	2 cut(s)	19, 1405
BslI	CCNNNNNNNGG	5 cut(s)	522, 728, 1427, 1428, 1429
BsmAI	GTCTC	2 cut(s)	586, 1233
BsmFI	GGGAC	2 cut(s)	19, 1405
BsmI	GAATGC	1 cut(s)	424
BsnI	GGCC	6 cut(s)	106, 265, 321, 945, 1412, 1433
Bsp119I	TTCGAA	1 cut(s)	377
Bsp120I	GGGCCC	1 cut(s)	1431
Bsp1286I	GDGCHC	8 cut(s)	114, 451, 563, 979, 1084, 1101, 1422, 1435
Bsp13I	TCCGGA	1 cut(s)	901
Bsp143I	GATC	2 cut(s)	718, 1031
Bsp19I	CCATGG	1 cut(s)	834
BspACI	CCGC	7 cut(s)	120, 126, 266, 452, 683, 1413, 1415
BspANI	GGCC	6 cut(s)	106, 265, 321, 945, 1412, 1433
BspCNI	CTCAG	2 cut(s)	148, 343
BspDI	ATCGAT	1 cut(s)	93
BspEI	TCCGGA	1 cut(s)	901
BspFNI	CGCG	1 cut(s)	1415
BspLI	GGNNCC	5 cut(s)	720, 937, 1419, 1432, 1433
BspMAI	CTGCAG	2 cut(s)	629, 1195
BspPI	GGATC	3 cut(s)	713, 726, 1039
BspT104I	TTCGAA	1 cut(s)	377
BsrDI	GCAATG	2 cut(s)	598, 760
BsrFI	RCCGGY	1 cut(s)	466
BsrI	ACTGG	5 cut(s)	220, 322, 444, 1006, 1452
BssAI	RCCGGY	1 cut(s)	466
BssECI	CCNNGG	6 cut(s)	186, 429, 834, 882, 918, 1413
BssMI	GATC	2 cut(s)	718, 1031
BssNI	GRCGYC	1 cut(s)	780
BssSI	CACGAG	1 cut(s)	585
BssT1I	CCWWGG	2 cut(s)	834, 918
Bst2BI	CACGAG	1 cut(s)	585
Bst2UI	CCWGG	3 cut(s)	233, 884, 947
Bst4CI	ACNGT	5 cut(s)	536, 961, 1271, 1396, 1461
BstACI	GRCGYC	1 cut(s)	780
BstAPI	GCANNNNNTGC	1 cut(s)	558
BstBI	TTCGAA	1 cut(s)	377
BstC8I	GCNNGC	4 cut(s)	554, 703, 1160, 1233
BstDEI	CTNAG	4 cut(s)	42, 156, 351, 1069
BstDSI	CCRYGG	2 cut(s)	834, 1413
BstF5I	GGATG	4 cut(s)	306, 812, 1079, 1335
BstFNI	CGCG	1 cut(s)	1415
BstHHI	GCGC	1 cut(s)	398
BstKTI	GATC	2 cut(s)	721, 1034
BstMAI	GTCTC	2 cut(s)	586, 1233
BstMBI	GATC	2 cut(s)	718, 1031
BstMWI	GCNNNNNNNGC	7 cut(s)	361, 364, 558, 702, 764, 767, 1049
BstNI	CCWGG	3 cut(s)	233, 884, 947
BstNSI	RCATGY	4 cut(s)	556, 636, 798, 1162
BstSCI	CCNGG	6 cut(s)	186, 231, 296, 337, 882, 945
BstSFI	CTRYAG	3 cut(s)	625, 1191, 1457
BstSLI	GKGCMC	6 cut(s)	114, 451, 563, 979, 1084, 1435
BstUI	CGCG	1 cut(s)	1415
BstV1I	GCAGC	8 cut(s)	367, 370, 373, 376, 745, 779, 1177, 1205
BstX2I	RGATCY	1 cut(s)	718
BstXI	CCANNNNNNTGG	3 cut(s)	919, 946, 1330
BstYI	RGATCY	1 cut(s)	718
Bsu15I	ATCGAT	1 cut(s)	93
BsuI	GTATCC	1 cut(s)	1327
BsuRI	GGCC	6 cut(s)	106, 265, 321, 945, 1412, 1433
BsuTUI	ATCGAT	1 cut(s)	93
BtgI	CCRYGG	2 cut(s)	834, 1413
BtgZI	GCGATG	1 cut(s)	711
BtsCI	GGATG	4 cut(s)	306, 812, 1079, 1335
BtsI	GCAGTG	2 cut(s)	563, 573
BtsIMutI	CAGTG	5 cut(s)	213, 451, 563, 573, 1401
Cac8I	GCNNGC	4 cut(s)	554, 703, 1160, 1233
CfoI	GCGC	1 cut(s)	398
Cfr10I	RCCGGY	1 cut(s)	466
Cfr13I	GGNCC	5 cut(s)	263, 909, 1199, 1431, 1432
Cfr42I	CCGCGG	1 cut(s)	1416
ClaI	ATCGAT	1 cut(s)	93
Csp6I	GTAC	2 cut(s)	999, 1214
CviAII	CATG	9 cut(s)	553, 633, 776, 784, 795, 835, 1035, 1102, 1159
CviQI	GTAC	2 cut(s)	999, 1214
DdeI	CTNAG	4 cut(s)	42, 156, 351, 1069
DpnI	GATC	2 cut(s)	720, 1033
DpnII	GATC	2 cut(s)	718, 1031
EaeI	YGGCCR	1 cut(s)	319
EciI	GGCGGA	1 cut(s)	135
Ecl136II	GAGCTC	1 cut(s)	1099
Eco130I	CCWWGG	2 cut(s)	834, 918
Eco147I	AGGCCT	1 cut(s)	945
Eco24I	GRGCYC	3 cut(s)	1101, 1422, 1435
Eco47I	GGWCC	2 cut(s)	909, 1199
Eco53kI	GAGCTC	1 cut(s)	1099
EcoICRI	GAGCTC	1 cut(s)	1099
EcoO109I	RGGNCCY	3 cut(s)	1199, 1431, 1432
EcoRII	CCWGG	3 cut(s)	231, 882, 945
EcoT14I	CCWWGG	2 cut(s)	834, 918
EcoT22I	ATGCAT	1 cut(s)	1164
EcoT38I	GRGCYC	3 cut(s)	1101, 1422, 1435
ErhI	CCWWGG	2 cut(s)	834, 918
FaeI	CATG	9 cut(s)	556, 636, 779, 787, 798, 838, 1038, 1105, 1162
FaqI	GGGAC	2 cut(s)	19, 1405
FatI	CATG	9 cut(s)	552, 632, 775, 783, 794, 834, 1034, 1101, 1158
FauI	CCCGC	1 cut(s)	459
FauNDI	CATATG	1 cut(s)	1055
FblI	GTMKAC	1 cut(s)	1456
FokI	GGATG	4 cut(s)	313, 819, 1086, 1342
FriOI	GRGCYC	3 cut(s)	1101, 1422, 1435
FspBI	CTAG	4 cut(s)	228, 891, 1217, 1465
GlaI	GCGC	1 cut(s)	397
GsaI	CCCAGC	1 cut(s)	1182
GsuI	CTGGAG	2 cut(s)	1257, 1435
HaeIII	GGCC	6 cut(s)	106, 265, 321, 945, 1412, 1433
HapII	CCGG	7 cut(s)	188, 269, 297, 322, 339, 467, 902
HhaI	GCGC	1 cut(s)	398
Hin1I	GRCGYC	1 cut(s)	780
Hin1II	CATG	9 cut(s)	556, 636, 779, 787, 798, 838, 1038, 1105, 1162
Hin6I	GCGC	1 cut(s)	396
HinP1I	GCGC	1 cut(s)	396
HincII	GTYRAC	1 cut(s)	294
HindII	GTYRAC	1 cut(s)	294
HinfI	GANTC	4 cut(s)	224, 606, 679, 898
HpaII	CCGG	7 cut(s)	188, 269, 297, 322, 339, 467, 902
HphI	GGTGA	4 cut(s)	286, 353, 422, 1106
Hpy166II	GTNNAC	8 cut(s)	112, 277, 294, 436, 561, 977, 1082, 1457
Hpy188I	TCNGA	1 cut(s)	1027
Hpy188III	TCNNGA	5 cut(s)	530, 902, 1017, 1124, 1251
Hpy8I	GTNNAC	8 cut(s)	112, 277, 294, 436, 561, 977, 1082, 1457
HpyAV	CCTTC	7 cut(s)	47, 110, 639, 1014, 1130, 1301, 1445
HpyCH4III	ACNGT	5 cut(s)	536, 961, 1271, 1396, 1461
HpyCH4IV	ACGT	1 cut(s)	780
HpyF10VI	GCNNNNNNNGC	7 cut(s)	361, 364, 558, 702, 764, 767, 1049
HpyF3I	CTNAG	4 cut(s)	42, 156, 351, 1069
HpySE526I	ACGT	1 cut(s)	780
Hsp92I	GRCGYC	1 cut(s)	780
Hsp92II	CATG	9 cut(s)	556, 636, 779, 787, 798, 838, 1038, 1105, 1162
HspAI	GCGC	1 cut(s)	396
Kpn2I	TCCGGA	1 cut(s)	901
KspI	CCGCGG	1 cut(s)	1416
Kzo9I	GATC	2 cut(s)	718, 1031
LmnI	GCTCC	5 cut(s)	235, 340, 935, 1048, 1417
Lsp1109I	GCAGC	8 cut(s)	367, 370, 373, 376, 745, 779, 1177, 1205
LweI	GCATC	2 cut(s)	85, 688
MaeI	CTAG	4 cut(s)	228, 891, 1217, 1465
MaeII	ACGT	1 cut(s)	780
MaeIII	GTNAC	2 cut(s)	313, 875
MalI	GATC	2 cut(s)	720, 1033
MboI	GATC	2 cut(s)	718, 1031
MboII	GAAGA	3 cut(s)	295, 809, 1334
MflI	RGATCY	1 cut(s)	718
MhlI	GDGCHC	8 cut(s)	114, 451, 563, 979, 1084, 1101, 1422, 1435
MluCI	AATT	6 cut(s)	65, 179, 191, 478, 498, 1346
MmeI	TCCRAC	1 cut(s)	696
Mph1103I	ATGCAT	1 cut(s)	1164
MroI	TCCGGA	1 cut(s)	901
MroXI	GAANNNNTTC	1 cut(s)	525
MseI	TTAA	4 cut(s)	477, 581, 741, 812
MslI	CAYNNNNRTG	1 cut(s)	1328
MspA1I	CMGCKG	1 cut(s)	1415
MspI	CCGG	7 cut(s)	188, 269, 297, 322, 339, 467, 902
MspR9I	CCNGG	6 cut(s)	188, 233, 298, 339, 884, 947
Mva1269I	GAATGC	1 cut(s)	424
MvaI	CCWGG	3 cut(s)	233, 884, 947
MvnI	CGCG	1 cut(s)	1415
MwoI	GCNNNNNNNGC	7 cut(s)	361, 364, 558, 702, 764, 767, 1049
NciI	CCSGG	3 cut(s)	188, 298, 339
NcoI	CCATGG	1 cut(s)	834
NdeI	CATATG	1 cut(s)	1055
NdeII	GATC	2 cut(s)	718, 1031
NlaIII	CATG	9 cut(s)	556, 636, 779, 787, 798, 838, 1038, 1105, 1162
NlaIV	GGNNCC	5 cut(s)	720, 937, 1419, 1432, 1433
NmeAIII	GCCGAG	1 cut(s)	372
NmuCI	GTSAC	1 cut(s)	313
NsiI	ATGCAT	1 cut(s)	1164
NspI	RCATGY	4 cut(s)	556, 636, 798, 1162
NspV	TTCGAA	1 cut(s)	377
PaeI	GCATGC	2 cut(s)	556, 1162
PceI	AGGCCT	1 cut(s)	945
PciI	ACATGT	1 cut(s)	632
PctI	GAATGC	1 cut(s)	424
PdmI	GAANNNNTTC	1 cut(s)	525
PfeI	GAWTC	4 cut(s)	224, 606, 679, 898
PpuMI	RGGWCCY	1 cut(s)	1199
PscI	ACATGT	1 cut(s)	632
Psp124BI	GAGCTC	1 cut(s)	1101
Psp5II	RGGWCCY	1 cut(s)	1199
Psp6I	CCWGG	3 cut(s)	231, 882, 945
PspFI	CCCAGC	1 cut(s)	1178
PspGI	CCWGG	3 cut(s)	231, 882, 945
PspN4I	GGNNCC	5 cut(s)	720, 937, 1419, 1432, 1433
PspOMI	GGGCCC	1 cut(s)	1431
PspPI	GGNCC	5 cut(s)	263, 909, 1199, 1431, 1432
PspPPI	RGGWCCY	1 cut(s)	1199
PstI	CTGCAG	2 cut(s)	629, 1195
PsuI	RGATCY	1 cut(s)	718
RsaI	GTAC	2 cut(s)	1000, 1215
RsaNI	GTAC	2 cut(s)	999, 1214
RseI	CAYNNNNRTG	1 cut(s)	1328
SacI	GAGCTC	1 cut(s)	1101
SacII	CCGCGG	1 cut(s)	1416
SaqAI	TTAA	4 cut(s)	477, 581, 741, 812
Sau3AI	GATC	2 cut(s)	718, 1031
Sau96I	GGNCC	5 cut(s)	263, 909, 1199, 1431, 1432
ScaI	AGTACT	1 cut(s)	1215
ScrFI	CCNGG	6 cut(s)	188, 233, 298, 339, 884, 947
SduI	GDGCHC	8 cut(s)	114, 451, 563, 979, 1084, 1101, 1422, 1435
SfaNI	GCATC	2 cut(s)	85, 688
SfcI	CTRYAG	3 cut(s)	625, 1191, 1457
Sfr303I	CCGCGG	1 cut(s)	1416
SfuI	TTCGAA	1 cut(s)	377
SgrBI	CCGCGG	1 cut(s)	1416
SinI	GGWCC	2 cut(s)	909, 1199
SmiMI	CAYNNNNRTG	1 cut(s)	1328
SphI	GCATGC	2 cut(s)	556, 1162
Sse9I	AATT	6 cut(s)	65, 179, 191, 478, 498, 1346
SseBI	AGGCCT	1 cut(s)	945
SsiI	CCGC	7 cut(s)	120, 126, 266, 452, 683, 1413, 1415
SspMI	CTAG	4 cut(s)	228, 891, 1217, 1465
SstI	GAGCTC	1 cut(s)	1101
StuI	AGGCCT	1 cut(s)	945
StyD4I	CCNGG	6 cut(s)	186, 231, 296, 337, 882, 945
StyI	CCWWGG	2 cut(s)	834, 918
TaaI	ACNGT	5 cut(s)	536, 961, 1271, 1396, 1461
TaiI	ACGT	1 cut(s)	783
TaqI	TCGA	4 cut(s)	93, 377, 539, 1018
TasI	AATT	6 cut(s)	65, 179, 191, 478, 498, 1346
TatI	WGTACW	1 cut(s)	1213
TauI	GCSGC	2 cut(s)	268, 1415
TfiI	GAWTC	4 cut(s)	224, 606, 679, 898
Tru1I	TTAA	4 cut(s)	477, 581, 741, 812
Tru9I	TTAA	4 cut(s)	477, 581, 741, 812
TscAI	CASTG	5 cut(s)	220, 451, 563, 580, 1401
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	8 cut(s)	355, 358, 361, 364, 758, 767, 1190, 1193
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	3 cut(s)	79, 375, 1099
TspRI	CASTG	5 cut(s)	220, 451, 563, 580, 1401
VneI	GTGCAC	4 cut(s)	110, 559, 975, 1080
VpaK11BI	GGWCC	2 cut(s)	909, 1199
XapI	RAATTY	2 cut(s)	191, 498
XceI	RCATGY	4 cut(s)	556, 636, 798, 1162
XcmI	CCANNNNNNNNNTGG	1 cut(s)	239
XmiI	GTMKAC	1 cut(s)	1456
XmnI	GAANNNNTTC	1 cut(s)	525
XspI	CTAG	4 cut(s)	228, 891, 1217, 1465
ZraI	GACGTC	1 cut(s)	781
ZrmI	AGTACT	1 cut(s)	1215
Zsp2I	ATGCAT	1 cut(s)	1164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.