Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007991

Physical Location & Seq

Genomic Coordinates Reverse (-)

8384816 .. 8386606

Gene Structure 1791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016630

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGACGATCTTCTTTTTCTTCTTCATATGTTCTCACATTTCCTCAATTTTGGAGGCTGAACCCCCTGAATGGCTTCCTGACAGTTCGAGTATAGTTTGCATGCAGTGCACTTCTCCTTTCACTGCCTTAACTCGTGGGAGACATCATTGCCGATTCTGTGGGGGGATTTTCTGCAGAACATGTAGTAAAGGAAGGTGCTTGTTGCCTGTCAAGTTTAGGGAGAGGAATCCGCAAATGGTCTGCGATGCCTGCTATGACAGGTTGGATCCTTTGCAGGGTATTCTTATTAACAGCATTAGCAATGCTGCACAAGCAGCAAAGCATGACGTCCTATCTAGGCTGAATCCGGAGAAGTCCATACCCTTGGCTGTTCTCAAAGGAGCCAAAGGCCTGGCAATCCTAACCGTTGCTAAAGCTGGTGCACTACTTTCTTACAAACTTGGTACTGGTTTGGTGGTTTCTCGAAGGTCAGATGGATCATGGTCTGCTCCATCAACCATATGTTCTGTTGGCTTAGGATGGGGTGCACAGATTGGGGGTGAGCTCATGGACTTCATCATTGTCCTTCCTGATATAAAAGCTGTGAAAACCTTTTGTAGTCGCATGCATTTCTCTCTTGGTGCTGTGCTAGAAGCAGATATGCGTGCTGGAGACAGGGGTTCTGGAATGTGCTATACATACAGTTGTAGCAAAGGTGCATTTGTAGGAGTATCGTTAGAAGGAAATGTTGTTGACACAAGGATGGATACAAATCTTCAATTTTATGGCGACCCTTACCTGACGACTAATGATATACTACTTGGGATCGGACAGTGGAAAGACCAAAGGCCGCGGAGCCTCTGTATGGGGCCCTTCAATCCCTCTACTCCAGTCTACAGTCCTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001726 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005886 GO:0005938 GO:0006810 GO:0006897 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0008289 GO:0009987 GO:0015629 GO:0016020 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030479 GO:0030863 GO:0030864 GO:0031252 GO:0031253 GO:0031256 GO:0031344 GO:0032587 GO:0035091 GO:0042995 GO:0043167 GO:0043168 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044459 GO:0044463 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051015 GO:0051017 GO:0051128 GO:0051179 GO:0051234 GO:0051641 GO:0051666 GO:0060491 GO:0061572 GO:0061645 GO:0065007 GO:0071840 GO:0071944 GO:0097435 GO:0098590 GO:0098657 GO:0099568 GO:0120025 GO:0120032 GO:0120035 GO:0120038 GO:1900027

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FYVE Ysc84

Protein Analysis

296

Amino Acids

32.14

Weight (kDa)

8.71

Isoelectric Point (pI)

37.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FYVE	PF01363	23 - 88	1.2e-19	FYVE zinc finger
Ysc84	PF04366	171 - 271	4.7e-24	Las17-binding protein actin regulator

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43230
fragaria_vesca	FvH4_1g09450 FvH4_1g09450
malus_domestica	MD02G1102900.v1.1 MD15G1224000.v1.1
prunus_persica	Prupe.7G191500_v2.0.a1 Prupe.7G191500_v2.0.a1 Prupe.7G191500_v2.0.a1 Prupe.7G191500_v2.0.a1
pyrus_communis	pycom02g08060 pycom15g19820
rosa_chinensis	RchiOBHm_Chr2g0096001 RchiOBHm_Chr2g0096261
rosa_laevigata	RLG00000016616 RLG00000016630
rosa_multiflora	Rmu_co8311399.1_g000001 Rmu_sc0002497.1_g000013
rosa_roxburghii	Rroxscaffold_2G00145870
rosa_rugosa	Rorug02G0055800
rosa_samantha	Rh2AG103700 Rh2BG105200 Rh2CG107700 Rh2DG105600
rosa_wichuraiana	Rw2G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	330
AccI	GTMKAC	1 cut(s)	873
AccII	CGCG	1 cut(s)	832
AccIII	TCCGGA	1 cut(s)	346
AciI	CCGC	3 cut(s)	230, 830, 832
AclWI	GGATC	4 cut(s)	260, 273, 484, 812
AcyI	GRCGYC	1 cut(s)	327
AfaI	GTAC	1 cut(s)	445
AfiI	CCNNNNNNNGG	3 cut(s)	69, 275, 844
AflIII	ACRYGT	1 cut(s)	179
AgsI	TTSAA	2 cut(s)	758, 856
AjnI	CCWGG	1 cut(s)	390
AluBI	AGCT	3 cut(s)	416, 544, 581
AluI	AGCT	3 cut(s)	416, 544, 581
Alw21I	GWGCWC	4 cut(s)	110, 424, 529, 546
Alw26I	GTCTC	2 cut(s)	133, 645
Alw44I	GTGCAC	3 cut(s)	106, 420, 525
AlwI	GGATC	4 cut(s)	260, 273, 484, 812
Aor13HI	TCCGGA	1 cut(s)	346
AoxI	GGCC	3 cut(s)	388, 827, 848
ApaI	GGGCCC	1 cut(s)	852
ApaLI	GTGCAC	3 cut(s)	106, 420, 525
ApeKI	GCWGC	2 cut(s)	305, 314
Asp700I	GAANNNNTTC	1 cut(s)	72
AspS9I	GGNCC	2 cut(s)	848, 849
AsuHPI	GGTGA	1 cut(s)	551
BaeGI	GKGCMC	4 cut(s)	110, 424, 529, 852
BamHI	GGATCC	1 cut(s)	265
BanII	GRGCYC	2 cut(s)	546, 852
BauI	CACGAG	1 cut(s)	132
Bbv12I	GWGCWC	4 cut(s)	110, 424, 529, 546
BbvI	GCAGC	2 cut(s)	292, 326
BccI	CCATC	4 cut(s)	467, 499, 513, 736
BciT130I	CCWGG	1 cut(s)	392
BciVI	GTATCC	1 cut(s)	739
BcoDI	GTCTC	2 cut(s)	133, 645
BfaI	CTAG	3 cut(s)	336, 629, 882
BfmI	CTRYAG	2 cut(s)	172, 874
BfuI	GTATCC	1 cut(s)	739
BisI	GCNGC	3 cut(s)	306, 315, 830
BlsI	GCNGC	3 cut(s)	307, 316, 831
Bme1390I	CCNGG	1 cut(s)	392
BmgT120I	GGNCC	2 cut(s)	848, 849
BmiI	GGNNCC	5 cut(s)	267, 382, 836, 849, 850
BmrFI	CCNGG	1 cut(s)	392
BmsI	GCATC	1 cut(s)	235
BpmI	CTGGAG	2 cut(s)	669, 852
Bpu10I	CCTNAGC	1 cut(s)	514
BsaBI	GATNNNNATC	1 cut(s)	750
BsaHI	GRCGYC	1 cut(s)	327
BsaJI	CCNNGG	2 cut(s)	363, 830
BsaWI	WCCGGW	1 cut(s)	346
BsaXI	ACNNNNNCTCC	2 cut(s)	826, 856
Bsc4I	CCNNNNNNNGG	3 cut(s)	69, 275, 844
Bse1I	ACTGG	2 cut(s)	451, 869
Bse3DI	GCAATG	2 cut(s)	145, 307
Bse8I	GATNNNNATC	1 cut(s)	750
BseAI	TCCGGA	1 cut(s)	346
BseBI	CCWGG	1 cut(s)	392
BseDI	CCNNGG	2 cut(s)	363, 830
BseGI	GGATG	2 cut(s)	524, 747
BseJI	GATNNNNATC	1 cut(s)	750
BseLI	CCNNNNNNNGG	3 cut(s)	69, 275, 844
BseMI	GCAATG	2 cut(s)	145, 307
BseNI	ACTGG	2 cut(s)	451, 869
BseSI	GKGCMC	4 cut(s)	110, 424, 529, 852
BseXI	GCAGC	2 cut(s)	292, 326
BsgI	GTGCAG	1 cut(s)	291
Bsh1236I	CGCG	1 cut(s)	832
BshFI	GGCC	3 cut(s)	390, 829, 850
BsiHKAI	GWGCWC	4 cut(s)	110, 424, 529, 546
BsiSI	CCGG	1 cut(s)	347
BslI	CCNNNNNNNGG	3 cut(s)	69, 275, 844
BsmAI	GTCTC	2 cut(s)	133, 645
BsnI	GGCC	3 cut(s)	390, 829, 850
Bsp120I	GGGCCC	1 cut(s)	848
Bsp1286I	GDGCHC	5 cut(s)	110, 424, 529, 546, 852
Bsp13I	TCCGGA	1 cut(s)	346
Bsp143I	GATC	4 cut(s)	6, 265, 476, 804
BspACI	CCGC	3 cut(s)	230, 830, 832
BspANI	GGCC	3 cut(s)	390, 829, 850
BspEI	TCCGGA	1 cut(s)	346
BspFNI	CGCG	1 cut(s)	832
BspLI	GGNNCC	5 cut(s)	267, 382, 836, 849, 850
BspMAI	CTGCAG	1 cut(s)	176
BspPI	GGATC	4 cut(s)	260, 273, 484, 812
BsrDI	GCAATG	2 cut(s)	145, 307
BsrI	ACTGG	2 cut(s)	451, 869
BssECI	CCNNGG	2 cut(s)	363, 830
BssMI	GATC	4 cut(s)	6, 265, 476, 804
BssNI	GRCGYC	1 cut(s)	327
BssSI	CACGAG	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	363
Bst2BI	CACGAG	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	392
Bst4CI	ACNGT	5 cut(s)	83, 406, 683, 813, 878
BstACI	GRCGYC	1 cut(s)	327
BstAPI	GCANNNNNTGC	1 cut(s)	105
BstC8I	GCNNGC	4 cut(s)	101, 250, 605, 645
BstDEI	CTNAG	1 cut(s)	514
BstDSI	CCRYGG	1 cut(s)	830
BstF5I	GGATG	2 cut(s)	524, 747
BstFNI	CGCG	1 cut(s)	832
BstKTI	GATC	4 cut(s)	9, 268, 479, 807
BstMAI	GTCTC	2 cut(s)	133, 645
BstMBI	GATC	4 cut(s)	6, 265, 476, 804
BstMWI	GCNNNNNNNGC	4 cut(s)	105, 249, 311, 314
BstNI	CCWGG	1 cut(s)	392
BstNSI	RCATGY	3 cut(s)	103, 183, 607
BstSCI	CCNGG	1 cut(s)	390
BstSFI	CTRYAG	2 cut(s)	172, 874
BstSLI	GKGCMC	4 cut(s)	110, 424, 529, 852
BstUI	CGCG	1 cut(s)	832
BstV1I	GCAGC	2 cut(s)	292, 326
BstX2I	RGATCY	1 cut(s)	265
BstXI	CCANNNNNNTGG	2 cut(s)	364, 391
BstYI	RGATCY	1 cut(s)	265
BsuI	GTATCC	1 cut(s)	739
BsuRI	GGCC	3 cut(s)	390, 829, 850
BtgI	CCRYGG	1 cut(s)	830
BtgZI	GCGATG	1 cut(s)	258
BtsCI	GGATG	2 cut(s)	524, 747
BtsI	GCAGTG	2 cut(s)	110, 120
BtsIMutI	CAGTG	3 cut(s)	110, 120, 818
Cac8I	GCNNGC	4 cut(s)	101, 250, 605, 645
Cfr13I	GGNCC	2 cut(s)	848, 849
Cfr42I	CCGCGG	1 cut(s)	833
Csp6I	GTAC	1 cut(s)	444
CviAII	CATG	6 cut(s)	100, 180, 323, 480, 547, 604
CviQI	GTAC	1 cut(s)	444
DdeI	CTNAG	1 cut(s)	514
DpnI	GATC	4 cut(s)	8, 267, 478, 806
DpnII	GATC	4 cut(s)	6, 265, 476, 804
Ecl136II	GAGCTC	1 cut(s)	544
Eco130I	CCWWGG	1 cut(s)	363
Eco147I	AGGCCT	1 cut(s)	390
Eco24I	GRGCYC	2 cut(s)	546, 852
Eco53kI	GAGCTC	1 cut(s)	544
EcoICRI	GAGCTC	1 cut(s)	544
EcoO109I	RGGNCCY	2 cut(s)	848, 849
EcoRII	CCWGG	1 cut(s)	390
EcoT14I	CCWWGG	1 cut(s)	363
EcoT22I	ATGCAT	1 cut(s)	609
EcoT38I	GRGCYC	2 cut(s)	546, 852
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	6 cut(s)	103, 183, 326, 483, 550, 607
FatI	CATG	6 cut(s)	99, 179, 322, 479, 546, 603
FauNDI	CATATG	2 cut(s)	26, 500
FblI	GTMKAC	1 cut(s)	873
Fnu4HI	GCNGC	3 cut(s)	306, 315, 830
FokI	GGATG	2 cut(s)	531, 754
FriOI	GRGCYC	2 cut(s)	546, 852
Fsp4HI	GCNGC	3 cut(s)	306, 315, 830
FspBI	CTAG	3 cut(s)	336, 629, 882
GluI	GCNGC	3 cut(s)	306, 315, 830
GsuI	CTGGAG	2 cut(s)	669, 852
HaeIII	GGCC	3 cut(s)	390, 829, 850
HapII	CCGG	1 cut(s)	347
Hin1I	GRCGYC	1 cut(s)	327
Hin1II	CATG	6 cut(s)	103, 183, 326, 483, 550, 607
HincII	GTYRAC	1 cut(s)	733
HindII	GTYRAC	1 cut(s)	733
HinfI	GANTC	3 cut(s)	153, 226, 343
HpaII	CCGG	1 cut(s)	347
HphI	GGTGA	1 cut(s)	551
Hpy166II	GTNNAC	5 cut(s)	108, 422, 527, 733, 874
Hpy188I	TCNGA	2 cut(s)	472, 809
Hpy188III	TCNNGA	5 cut(s)	77, 347, 462, 569, 663
Hpy8I	GTNNAC	5 cut(s)	108, 422, 527, 733, 874
HpyAV	CCTTC	5 cut(s)	186, 459, 575, 713, 862
HpyCH4III	ACNGT	5 cut(s)	83, 406, 683, 813, 878
HpyCH4IV	ACGT	1 cut(s)	327
HpyF10VI	GCNNNNNNNGC	4 cut(s)	105, 249, 311, 314
HpyF3I	CTNAG	1 cut(s)	514
HpySE526I	ACGT	1 cut(s)	327
Hsp92I	GRCGYC	1 cut(s)	327
Hsp92II	CATG	6 cut(s)	103, 183, 326, 483, 550, 607
Kpn2I	TCCGGA	1 cut(s)	346
KspI	CCGCGG	1 cut(s)	833
Kzo9I	GATC	4 cut(s)	6, 265, 476, 804
LmnI	GCTCC	3 cut(s)	380, 493, 834
Lsp1109I	GCAGC	2 cut(s)	292, 326
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	3 cut(s)	336, 629, 882
MaeII	ACGT	1 cut(s)	327
MalI	GATC	4 cut(s)	8, 267, 478, 806
MboI	GATC	4 cut(s)	6, 265, 476, 804
MboII	GAAGA	3 cut(s)	10, 13, 746
MflI	RGATCY	1 cut(s)	265
MhlI	GDGCHC	5 cut(s)	110, 424, 529, 546, 852
MluCI	AATT	2 cut(s)	45, 758
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	5 cut(s)	46, 52, 216, 848, 871
Mph1103I	ATGCAT	1 cut(s)	609
MroI	TCCGGA	1 cut(s)	346
MroXI	GAANNNNTTC	1 cut(s)	72
MseI	TTAA	2 cut(s)	128, 288
MslI	CAYNNNNRTG	1 cut(s)	740
MspA1I	CMGCKG	1 cut(s)	832
MspI	CCGG	1 cut(s)	347
MspR9I	CCNGG	1 cut(s)	392
MvaI	CCWGG	1 cut(s)	392
MvnI	CGCG	1 cut(s)	832
MwoI	GCNNNNNNNGC	4 cut(s)	105, 249, 311, 314
NdeI	CATATG	2 cut(s)	26, 500
NdeII	GATC	4 cut(s)	6, 265, 476, 804
NlaIII	CATG	6 cut(s)	103, 183, 326, 483, 550, 607
NlaIV	GGNNCC	5 cut(s)	267, 382, 836, 849, 850
NsiI	ATGCAT	1 cut(s)	609
NspI	RCATGY	3 cut(s)	103, 183, 607
PaeI	GCATGC	2 cut(s)	103, 607
PceI	AGGCCT	1 cut(s)	390
PciI	ACATGT	1 cut(s)	179
PdmI	GAANNNNTTC	1 cut(s)	72
PfeI	GAWTC	3 cut(s)	153, 226, 343
PkrI	GCNGC	3 cut(s)	307, 316, 831
PscI	ACATGT	1 cut(s)	179
Psp124BI	GAGCTC	1 cut(s)	546
Psp6I	CCWGG	1 cut(s)	390
PspGI	CCWGG	1 cut(s)	390
PspN4I	GGNNCC	5 cut(s)	267, 382, 836, 849, 850
PspOMI	GGGCCC	1 cut(s)	848
PspPI	GGNCC	2 cut(s)	848, 849
PstI	CTGCAG	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	265
RsaI	GTAC	1 cut(s)	445
RsaNI	GTAC	1 cut(s)	444
RseI	CAYNNNNRTG	1 cut(s)	740
SacI	GAGCTC	1 cut(s)	546
SacII	CCGCGG	1 cut(s)	833
SaqAI	TTAA	2 cut(s)	128, 288
SatI	GCNGC	3 cut(s)	306, 315, 830
Sau3AI	GATC	4 cut(s)	6, 265, 476, 804
Sau96I	GGNCC	2 cut(s)	848, 849
ScrFI	CCNGG	1 cut(s)	392
SduI	GDGCHC	5 cut(s)	110, 424, 529, 546, 852
SfaNI	GCATC	1 cut(s)	235
SfcI	CTRYAG	2 cut(s)	172, 874
Sfr303I	CCGCGG	1 cut(s)	833
SgrBI	CCGCGG	1 cut(s)	833
SmiMI	CAYNNNNRTG	1 cut(s)	740
SphI	GCATGC	2 cut(s)	103, 607
Sse9I	AATT	2 cut(s)	45, 758
SseBI	AGGCCT	1 cut(s)	390
SsiI	CCGC	3 cut(s)	230, 830, 832
SspMI	CTAG	3 cut(s)	336, 629, 882
SstI	GAGCTC	1 cut(s)	546
StuI	AGGCCT	1 cut(s)	390
StyD4I	CCNGG	1 cut(s)	390
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	5 cut(s)	83, 406, 683, 813, 878
TaiI	ACGT	1 cut(s)	330
TaqI	TCGA	2 cut(s)	86, 463
TasI	AATT	2 cut(s)	45, 758
TauI	GCSGC	1 cut(s)	832
TfiI	GAWTC	3 cut(s)	153, 226, 343
Tru1I	TTAA	2 cut(s)	128, 288
Tru9I	TTAA	2 cut(s)	128, 288
TscAI	CASTG	3 cut(s)	110, 127, 818
TseI	GCWGC	2 cut(s)	305, 314
TspDTI	ATGAA	2 cut(s)	13, 544
TspRI	CASTG	3 cut(s)	110, 127, 818
VneI	GTGCAC	3 cut(s)	106, 420, 525
XceI	RCATGY	3 cut(s)	103, 183, 607
XmiI	GTMKAC	1 cut(s)	873
XmnI	GAANNNNTTC	1 cut(s)	72
XspI	CTAG	3 cut(s)	336, 629, 882
ZraI	GACGTC	1 cut(s)	328
Zsp2I	ATGCAT	1 cut(s)	609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.