Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8311399.1

Orthogroup ID

OG0007991

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 871

Gene Structure 870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8311399.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

atggcgagttttgaggggagggtttcgttttcgtcccttcttcctaagatagagaaaagcaatacccaattccactatgttgatgatgacttcatcgatgccgaatggcctgtgcacgaaggcggaggcggtacgacttacccatcagtttccaaagctgacaagcaagattattcgtatcaatttcccccggaatttgatagttttggagatgacactggatatgattctagccaggagcattgtggttctggggtgatggatgggccgccggaggtgaacttgaagaatgtgttgaccgggatgattgccattgtgactggccggaacaaagttgctcccggtgaaacacctgagcagcagcagcagcaacccacttcgaatgtttcatttctcggtgcagaaaagaatggtgatacttacttgcattcctcggtttacacgcccagtgccccgcccctttttgagccagttgcctttaattatagtgcatacaaggaaattttggaggctgaaccccctgaatggcttcctgacagttcaagtatagtttgcacgcagtgcacttctcctttcactgccttaactcgtgggagacatcattgccgattctgtggtgggattttctgcagaacatgtagtaaaggaaggtgcttgttgcctgtcaagtttagggagaggaatccgcagagggtctgcgatgcctgctatgacaggttggatcctttgcagggtattcttattaacagcattagcaatgctgcacaagcagcaaaacatgacgtcatggattggacatgtacaagaggatggttaaatcttcctgttggtttctccatggaacaagagatatacaaagcaaccaacaca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001726 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005886 GO:0005938 GO:0006810 GO:0006897 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0008289 GO:0009987 GO:0015629 GO:0016020 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030479 GO:0030863 GO:0030864 GO:0031252 GO:0031253 GO:0031256 GO:0031344 GO:0032587 GO:0035091 GO:0042995 GO:0043167 GO:0043168 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044459 GO:0044463 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051015 GO:0051017 GO:0051128 GO:0051179 GO:0051234 GO:0051641 GO:0051666 GO:0060491 GO:0061572 GO:0061645 GO:0065007 GO:0071840 GO:0071944 GO:0097435 GO:0098590 GO:0098657 GO:0099568 GO:0120025 GO:0120032 GO:0120035 GO:0120038 GO:1900027

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FYVE Ysc84

Protein Analysis

290

Amino Acids

32.13

Weight (kDa)

5.01

Isoelectric Point (pI)

48.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43230
fragaria_vesca	FvH4_1g09450 FvH4_1g09450
malus_domestica	MD02G1102900.v1.1 MD15G1224000.v1.1
prunus_persica	Prupe.7G191500_v2.0.a1 Prupe.7G191500_v2.0.a1 Prupe.7G191500_v2.0.a1 Prupe.7G191500_v2.0.a1
pyrus_communis	pycom02g08060 pycom15g19820
rosa_chinensis	RchiOBHm_Chr2g0096001 RchiOBHm_Chr2g0096261
rosa_laevigata	RLG00000016616 RLG00000016630
rosa_multiflora	Rmu_co8311399.1_g000001 Rmu_sc0002497.1_g000013
rosa_roxburghii	Rroxscaffold_2G00145870
rosa_rugosa	Rorug02G0055800
rosa_samantha	Rh2AG103700 Rh2BG105200 Rh2CG107700 Rh2DG105600
rosa_wichuraiana	Rw2G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	786
AciI	CCGC	5 cut(s)	123, 129, 269, 455, 686
AclWI	GGATC	2 cut(s)	716, 729
AcoI	YGGCCR	1 cut(s)	322
AcsI	RAATTY	2 cut(s)	194, 501
AcyI	GRCGYC	1 cut(s)	783
AdeI	CACNNNGTG	1 cut(s)	561
AfaI	GTAC	2 cut(s)	133, 802
AfiI	CCNNNNNNNGG	2 cut(s)	525, 731
AflIII	ACRYGT	2 cut(s)	635, 797
AgsI	TTSAA	2 cut(s)	286, 543
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	1 cut(s)	158
AluI	AGCT	1 cut(s)	158
Alw21I	GWGCWC	2 cut(s)	117, 566
Alw26I	GTCTC	1 cut(s)	589
Alw44I	GTGCAC	2 cut(s)	113, 562
AlwI	GGATC	2 cut(s)	716, 729
AoxI	GGCC	3 cut(s)	107, 266, 322
ApaLI	GTGCAC	2 cut(s)	113, 562
ApeKI	GCWGC	6 cut(s)	358, 361, 364, 367, 761, 770
ApoI	RAATTY	2 cut(s)	194, 501
Asp700I	GAANNNNTTC	1 cut(s)	528
AspS9I	GGNCC	1 cut(s)	266
AsuC2I	CCSGG	3 cut(s)	191, 301, 342
AsuHPI	GGTGA	4 cut(s)	268, 289, 356, 425
AsuII	TTCGAA	1 cut(s)	380
BaeGI	GKGCMC	3 cut(s)	117, 454, 566
BamHI	GGATCC	1 cut(s)	721
BauI	CACGAG	1 cut(s)	588
Bbv12I	GWGCWC	2 cut(s)	117, 566
BbvI	GCAGC	6 cut(s)	370, 373, 376, 379, 748, 782
BccI	CCATC	4 cut(s)	151, 253, 257, 804
BciT130I	CCWGG	1 cut(s)	236
BcnI	CCSGG	3 cut(s)	191, 301, 342
BcoDI	GTCTC	1 cut(s)	589
BfaI	CTAG	1 cut(s)	231
BfmI	CTRYAG	1 cut(s)	628
BisI	GCNGC	7 cut(s)	269, 359, 362, 365, 368, 762, 771
BlsI	GCNGC	7 cut(s)	270, 360, 363, 366, 369, 763, 772
Bme1390I	CCNGG	4 cut(s)	191, 236, 301, 342
BmgT120I	GGNCC	1 cut(s)	266
BmiI	GGNNCC	1 cut(s)	723
BmrFI	CCNGG	4 cut(s)	191, 236, 301, 342
BmrI	ACTGGG	1 cut(s)	441
BmsI	GCATC	2 cut(s)	88, 691
BmuI	ACTGGG	1 cut(s)	441
Bpu10I	CCTNAGC	1 cut(s)	354
Bpu14I	TTCGAA	1 cut(s)	380
BpuMI	CCSGG	3 cut(s)	191, 301, 342
Bsa29I	ATCGAT	1 cut(s)	96
BsaHI	GRCGYC	1 cut(s)	783
BsaJI	CCNNGG	3 cut(s)	189, 432, 837
Bsc4I	CCNNNNNNNGG	2 cut(s)	525, 731
Bse1I	ACTGG	4 cut(s)	223, 325, 447, 470
Bse3DI	GCAATG	2 cut(s)	601, 763
BseBI	CCWGG	1 cut(s)	236
BseCI	ATCGAT	1 cut(s)	96
BseDI	CCNNGG	3 cut(s)	189, 432, 837
BseGI	GGATG	3 cut(s)	268, 309, 815
BseLI	CCNNNNNNNGG	2 cut(s)	525, 731
BseMI	GCAATG	2 cut(s)	601, 763
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	4 cut(s)	223, 325, 447, 470
BseSI	GKGCMC	3 cut(s)	117, 454, 566
BseXI	GCAGC	6 cut(s)	370, 373, 376, 379, 748, 782
BsgI	GTGCAG	2 cut(s)	420, 747
BshFI	GGCC	3 cut(s)	109, 268, 324
BshVI	ATCGAT	1 cut(s)	96
BsiHKAI	GWGCWC	2 cut(s)	117, 566
BsiSI	CCGG	5 cut(s)	191, 272, 300, 325, 342
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	2 cut(s)	525, 731
BsmAI	GTCTC	1 cut(s)	589
BsmFI	GGGAC	1 cut(s)	19
BsmI	GAATGC	1 cut(s)	427
BsnI	GGCC	3 cut(s)	109, 268, 324
Bsp119I	TTCGAA	1 cut(s)	380
Bsp1286I	GDGCHC	3 cut(s)	117, 454, 566
Bsp1407I	TGTACA	1 cut(s)	800
Bsp143I	GATC	1 cut(s)	721
Bsp19I	CCATGG	1 cut(s)	837
BspACI	CCGC	5 cut(s)	123, 129, 269, 455, 686
BspANI	GGCC	3 cut(s)	109, 268, 324
BspCNI	CTCAG	1 cut(s)	346
BspDI	ATCGAT	1 cut(s)	96
BspLI	GGNNCC	1 cut(s)	723
BspMAI	CTGCAG	1 cut(s)	632
BspPI	GGATC	2 cut(s)	716, 729
BspT104I	TTCGAA	1 cut(s)	380
BsrDI	GCAATG	2 cut(s)	601, 763
BsrGI	TGTACA	1 cut(s)	800
BsrI	ACTGG	4 cut(s)	223, 325, 447, 470
BssECI	CCNNGG	3 cut(s)	189, 432, 837
BssMI	GATC	1 cut(s)	721
BssNI	GRCGYC	1 cut(s)	783
BssSI	CACGAG	1 cut(s)	588
BssT1I	CCWWGG	1 cut(s)	837
Bst2BI	CACGAG	1 cut(s)	588
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	1 cut(s)	539
BstACI	GRCGYC	1 cut(s)	783
BstAPI	GCANNNNNTGC	1 cut(s)	561
BstAUI	TGTACA	1 cut(s)	800
BstBI	TTCGAA	1 cut(s)	380
BstC8I	GCNNGC	2 cut(s)	557, 706
BstDEI	CTNAG	2 cut(s)	45, 354
BstDSI	CCRYGG	1 cut(s)	837
BstF5I	GGATG	3 cut(s)	268, 309, 815
BstKTI	GATC	1 cut(s)	724
BstMAI	GTCTC	1 cut(s)	589
BstMBI	GATC	1 cut(s)	721
BstMWI	GCNNNNNNNGC	6 cut(s)	364, 367, 561, 705, 767, 770
BstNI	CCWGG	1 cut(s)	236
BstNSI	RCATGY	2 cut(s)	639, 801
BstSCI	CCNGG	4 cut(s)	189, 234, 299, 340
BstSFI	CTRYAG	1 cut(s)	628
BstSLI	GKGCMC	3 cut(s)	117, 454, 566
BstV1I	GCAGC	6 cut(s)	370, 373, 376, 379, 748, 782
BstX2I	RGATCY	1 cut(s)	721
BstYI	RGATCY	1 cut(s)	721
Bsu15I	ATCGAT	1 cut(s)	96
BsuRI	GGCC	3 cut(s)	109, 268, 324
BsuTUI	ATCGAT	1 cut(s)	96
BtgI	CCRYGG	1 cut(s)	837
BtgZI	GCGATG	1 cut(s)	714
BtsCI	GGATG	3 cut(s)	268, 309, 815
BtsI	GCAGTG	2 cut(s)	566, 576
BtsIMutI	CAGTG	4 cut(s)	216, 454, 566, 576
Cac8I	GCNNGC	2 cut(s)	557, 706
Cfr13I	GGNCC	1 cut(s)	266
ClaI	ATCGAT	1 cut(s)	96
Csp6I	GTAC	2 cut(s)	132, 801
CviAII	CATG	5 cut(s)	636, 779, 787, 798, 838
CviJI	RGCY	8 cut(s)	109, 158, 234, 268, 324, 469, 512, 529
CviKI_1	RGCY	8 cut(s)	109, 158, 234, 268, 324, 469, 512, 529
CviQI	GTAC	2 cut(s)	132, 801
DdeI	CTNAG	2 cut(s)	45, 354
DpnI	GATC	1 cut(s)	723
DpnII	GATC	1 cut(s)	721
DraIII	CACNNNGTG	1 cut(s)	561
EaeI	YGGCCR	1 cut(s)	322
EciI	GGCGGA	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	837
EcoRII	CCWGG	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	837
ErhI	CCWWGG	1 cut(s)	837
FaeI	CATG	5 cut(s)	639, 782, 790, 801, 841
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	5 cut(s)	635, 778, 786, 797, 837
FauI	CCCGC	1 cut(s)	462
Fnu4HI	GCNGC	7 cut(s)	269, 359, 362, 365, 368, 762, 771
FokI	GGATG	3 cut(s)	275, 316, 822
Fsp4HI	GCNGC	7 cut(s)	269, 359, 362, 365, 368, 762, 771
FspBI	CTAG	1 cut(s)	231
GluI	GCNGC	7 cut(s)	269, 359, 362, 365, 368, 762, 771
HaeIII	GGCC	3 cut(s)	109, 268, 324
HapII	CCGG	5 cut(s)	191, 272, 300, 325, 342
Hin1I	GRCGYC	1 cut(s)	783
Hin1II	CATG	5 cut(s)	639, 782, 790, 801, 841
HincII	GTYRAC	1 cut(s)	297
HindII	GTYRAC	1 cut(s)	297
HinfI	GANTC	3 cut(s)	227, 609, 682
HpaII	CCGG	5 cut(s)	191, 272, 300, 325, 342
HphI	GGTGA	4 cut(s)	268, 289, 356, 425
Hpy166II	GTNNAC	5 cut(s)	115, 280, 297, 439, 564
Hpy188III	TCNNGA	1 cut(s)	533
Hpy8I	GTNNAC	5 cut(s)	115, 280, 297, 439, 564
HpyAV	CCTTC	3 cut(s)	47, 113, 642
HpyCH4III	ACNGT	1 cut(s)	539
HpyCH4IV	ACGT	1 cut(s)	783
HpyCH4V	TGCA	9 cut(s)	115, 401, 427, 491, 555, 564, 630, 730, 764
HpyF10VI	GCNNNNNNNGC	6 cut(s)	364, 367, 561, 705, 767, 770
HpyF3I	CTNAG	2 cut(s)	45, 354
HpySE526I	ACGT	1 cut(s)	783
Hsp92I	GRCGYC	1 cut(s)	783
Hsp92II	CATG	5 cut(s)	639, 782, 790, 801, 841
Kzo9I	GATC	1 cut(s)	721
LmnI	GCTCC	2 cut(s)	238, 343
Lsp1109I	GCAGC	6 cut(s)	370, 373, 376, 379, 748, 782
LweI	GCATC	2 cut(s)	88, 691
MaeI	CTAG	1 cut(s)	231
MaeII	ACGT	1 cut(s)	783
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	1 cut(s)	723
MboI	GATC	1 cut(s)	721
MboII	GAAGA	3 cut(s)	32, 298, 812
MflI	RGATCY	1 cut(s)	721
MhlI	GDGCHC	3 cut(s)	117, 454, 566
MluCI	AATT	5 cut(s)	68, 182, 194, 481, 501
MmeI	TCCRAC	1 cut(s)	699
MnlI	CCTC	9 cut(s)	7, 12, 119, 268, 442, 502, 672, 684, 800
MroXI	GAANNNNTTC	1 cut(s)	528
MseI	TTAA	4 cut(s)	480, 584, 744, 815
MspI	CCGG	5 cut(s)	191, 272, 300, 325, 342
MspR9I	CCNGG	4 cut(s)	191, 236, 301, 342
Mva1269I	GAATGC	1 cut(s)	427
MvaI	CCWGG	1 cut(s)	236
MwoI	GCNNNNNNNGC	6 cut(s)	364, 367, 561, 705, 767, 770
NciI	CCSGG	3 cut(s)	191, 301, 342
NcoI	CCATGG	1 cut(s)	837
NdeII	GATC	1 cut(s)	721
NlaIII	CATG	5 cut(s)	639, 782, 790, 801, 841
NlaIV	GGNNCC	1 cut(s)	723
NmuCI	GTSAC	1 cut(s)	316
NspI	RCATGY	2 cut(s)	639, 801
NspV	TTCGAA	1 cut(s)	380
PciI	ACATGT	2 cut(s)	635, 797
PctI	GAATGC	1 cut(s)	427
PdmI	GAANNNNTTC	1 cut(s)	528
PfeI	GAWTC	3 cut(s)	227, 609, 682
PkrI	GCNGC	7 cut(s)	270, 360, 363, 366, 369, 763, 772
PscI	ACATGT	2 cut(s)	635, 797
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	1 cut(s)	723
PspPI	GGNCC	1 cut(s)	266
PstI	CTGCAG	1 cut(s)	632
PsuI	RGATCY	1 cut(s)	721
RsaI	GTAC	2 cut(s)	133, 802
RsaNI	GTAC	2 cut(s)	132, 801
SaqAI	TTAA	4 cut(s)	480, 584, 744, 815
SatI	GCNGC	7 cut(s)	269, 359, 362, 365, 368, 762, 771
Sau3AI	GATC	1 cut(s)	721
Sau96I	GGNCC	1 cut(s)	266
ScrFI	CCNGG	4 cut(s)	191, 236, 301, 342
SduI	GDGCHC	3 cut(s)	117, 454, 566
SetI	ASST	6 cut(s)	160, 279, 355, 653, 719, 786
SfaNI	GCATC	2 cut(s)	88, 691
SfcI	CTRYAG	1 cut(s)	628
SfuI	TTCGAA	1 cut(s)	380
Sse9I	AATT	5 cut(s)	68, 182, 194, 481, 501
SsiI	CCGC	5 cut(s)	123, 129, 269, 455, 686
SspMI	CTAG	1 cut(s)	231
StyD4I	CCNGG	4 cut(s)	189, 234, 299, 340
StyI	CCWWGG	1 cut(s)	837
TaaI	ACNGT	1 cut(s)	539
TaiI	ACGT	1 cut(s)	786
TaqI	TCGA	2 cut(s)	96, 380
TasI	AATT	5 cut(s)	68, 182, 194, 481, 501
TatI	WGTACW	1 cut(s)	800
TauI	GCSGC	1 cut(s)	271
TfiI	GAWTC	3 cut(s)	227, 609, 682
Tru1I	TTAA	4 cut(s)	480, 584, 744, 815
Tru9I	TTAA	4 cut(s)	480, 584, 744, 815
TscAI	CASTG	4 cut(s)	223, 454, 566, 583
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	6 cut(s)	358, 361, 364, 367, 761, 770
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	2 cut(s)	82, 378
TspRI	CASTG	4 cut(s)	223, 454, 566, 583
VneI	GTGCAC	2 cut(s)	113, 562
XapI	RAATTY	2 cut(s)	194, 501
XceI	RCATGY	2 cut(s)	639, 801
XcmI	CCANNNNNNNNNTGG	1 cut(s)	242
XmnI	GAANNNNTTC	1 cut(s)	528
XspI	CTAG	1 cut(s)	231
ZraI	GACGTC	1 cut(s)	784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.