Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002497.1

Orthogroup ID

OG0007991

Physical Location & Seq

Genomic Coordinates Forward (+)

52342 .. 53048

Gene Structure 707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002497.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atggacttcatcattgtccttcctgatataaaagctgtgaaaaccttttgtagtcgcatgcatttctctcttggtgctgggtgtagtgctgcagcaggacctattggtagagtgctagaagcagatatgcgtgctggagacaggggttctggaatgtgctatacatacagttgtagcaaaggtgcatttgtaggagtatcattagaaggaaatgttgttgccacaaggatggatacaaatcttcaattttatggcgacccttacctgacgactaatgatatacttcttgggacagtggacagaccaaaggccgcggagcccctgtatggggcccttcaatccctctactccagtctacggtcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001726 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005886 GO:0005938 GO:0006810 GO:0006897 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0008289 GO:0009987 GO:0015629 GO:0016020 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030479 GO:0030863 GO:0030864 GO:0031252 GO:0031253 GO:0031256 GO:0031344 GO:0032587 GO:0035091 GO:0042995 GO:0043167 GO:0043168 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044459 GO:0044463 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051015 GO:0051017 GO:0051128 GO:0051179 GO:0051234 GO:0051641 GO:0051666 GO:0060491 GO:0061572 GO:0061645 GO:0065007 GO:0071840 GO:0071944 GO:0097435 GO:0098590 GO:0098657 GO:0099568 GO:0120025 GO:0120032 GO:0120035 GO:0120038 GO:1900027

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FYVE Ysc84

Protein Analysis

121

Amino Acids

12.91

Weight (kDa)

6.53

Isoelectric Point (pI)

25.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43230
fragaria_vesca	FvH4_1g09450 FvH4_1g09450
malus_domestica	MD02G1102900.v1.1 MD15G1224000.v1.1
prunus_persica	Prupe.7G191500_v2.0.a1 Prupe.7G191500_v2.0.a1 Prupe.7G191500_v2.0.a1 Prupe.7G191500_v2.0.a1
pyrus_communis	pycom02g08060 pycom15g19820
rosa_chinensis	RchiOBHm_Chr2g0096001 RchiOBHm_Chr2g0096261
rosa_laevigata	RLG00000016616 RLG00000016630
rosa_multiflora	Rmu_co8311399.1_g000001 Rmu_sc0002497.1_g000013
rosa_roxburghii	Rroxscaffold_2G00145870
rosa_rugosa	Rorug02G0055800
rosa_samantha	Rh2AG103700 Rh2BG105200 Rh2CG107700 Rh2DG105600
rosa_wichuraiana	Rw2G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	355
AccII	CGCG	1 cut(s)	314
AciI	CCGC	2 cut(s)	312, 314
AfiI	CCNNNNNNNGG	4 cut(s)	326, 327, 328, 357
AgsI	TTSAA	2 cut(s)	245, 338
AluBI	AGCT	1 cut(s)	35
AluI	AGCT	1 cut(s)	35
Alw26I	GTCTC	1 cut(s)	132
AoxI	GGCC	2 cut(s)	309, 330
ApaI	GGGCCC	1 cut(s)	334
ApeKI	GCWGC	2 cut(s)	89, 92
AspS9I	GGNCC	4 cut(s)	98, 330, 331, 360
AvaII	GGWCC	2 cut(s)	98, 360
BaeGI	GKGCMC	1 cut(s)	334
BanII	GRGCYC	2 cut(s)	321, 334
BbvI	GCAGC	2 cut(s)	76, 104
BccI	CCATC	1 cut(s)	223
BciVI	GTATCC	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	132
BfaI	CTAG	2 cut(s)	116, 364
BfmI	CTRYAG	1 cut(s)	90
BfuI	GTATCC	1 cut(s)	226
BisI	GCNGC	3 cut(s)	90, 93, 312
BlsI	GCNGC	3 cut(s)	91, 94, 313
Bme18I	GGWCC	2 cut(s)	98, 360
BmgT120I	GGNCC	4 cut(s)	98, 330, 331, 360
BmiI	GGNNCC	3 cut(s)	318, 331, 332
BpmI	CTGGAG	2 cut(s)	156, 334
BsaBI	GATNNNNATC	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	312
BsaXI	ACNNNNNCTCC	2 cut(s)	308, 338
Bsc4I	CCNNNNNNNGG	4 cut(s)	326, 327, 328, 357
Bse1I	ACTGG	1 cut(s)	351
Bse8I	GATNNNNATC	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	312
BseGI	GGATG	1 cut(s)	234
BseJI	GATNNNNATC	1 cut(s)	237
BseLI	CCNNNNNNNGG	4 cut(s)	326, 327, 328, 357
BseNI	ACTGG	1 cut(s)	351
BseSI	GKGCMC	1 cut(s)	334
BseXI	GCAGC	2 cut(s)	76, 104
BseYI	CCCAGC	1 cut(s)	77
Bsh1236I	CGCG	1 cut(s)	314
BshFI	GGCC	2 cut(s)	311, 332
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	4 cut(s)	326, 327, 328, 357
BsmAI	GTCTC	1 cut(s)	132
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	2 cut(s)	311, 332
Bsp120I	GGGCCC	1 cut(s)	330
Bsp1286I	GDGCHC	2 cut(s)	321, 334
BspACI	CCGC	2 cut(s)	312, 314
BspANI	GGCC	2 cut(s)	311, 332
BspFNI	CGCG	1 cut(s)	314
BspLI	GGNNCC	3 cut(s)	318, 331, 332
BspMAI	CTGCAG	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	351
BssECI	CCNNGG	1 cut(s)	312
Bst4CI	ACNGT	3 cut(s)	170, 295, 360
BstC8I	GCNNGC	2 cut(s)	59, 132
BstDSI	CCRYGG	1 cut(s)	312
BstF5I	GGATG	1 cut(s)	234
BstFNI	CGCG	1 cut(s)	314
BstMAI	GTCTC	1 cut(s)	132
BstNSI	RCATGY	1 cut(s)	61
BstSFI	CTRYAG	1 cut(s)	90
BstSLI	GKGCMC	1 cut(s)	334
BstUI	CGCG	1 cut(s)	314
BstV1I	GCAGC	2 cut(s)	76, 104
BstXI	CCANNNNNNTGG	1 cut(s)	229
BsuI	GTATCC	1 cut(s)	226
BsuRI	GGCC	2 cut(s)	311, 332
BtgI	CCRYGG	1 cut(s)	312
BtsCI	GGATG	1 cut(s)	234
BtsIMutI	CAGTG	1 cut(s)	300
Cac8I	GCNNGC	2 cut(s)	59, 132
Cfr13I	GGNCC	4 cut(s)	98, 330, 331, 360
Cfr42I	CCGCGG	1 cut(s)	315
CviAII	CATG	1 cut(s)	58
CviJI	RGCY	4 cut(s)	35, 311, 319, 332
CviKI_1	RGCY	4 cut(s)	35, 311, 319, 332
Eco24I	GRGCYC	2 cut(s)	321, 334
Eco47I	GGWCC	2 cut(s)	98, 360
EcoO109I	RGGNCCY	3 cut(s)	98, 330, 331
EcoT22I	ATGCAT	1 cut(s)	63
EcoT38I	GRGCYC	2 cut(s)	321, 334
FaeI	CATG	1 cut(s)	61
FaiI	YATR	8 cut(s)	29, 59, 128, 162, 166, 252, 281, 327
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	1 cut(s)	57
FblI	GTMKAC	1 cut(s)	355
Fnu4HI	GCNGC	3 cut(s)	90, 93, 312
FokI	GGATG	1 cut(s)	241
FriOI	GRGCYC	2 cut(s)	321, 334
Fsp4HI	GCNGC	3 cut(s)	90, 93, 312
FspBI	CTAG	2 cut(s)	116, 364
GluI	GCNGC	3 cut(s)	90, 93, 312
GsaI	CCCAGC	1 cut(s)	81
GsuI	CTGGAG	2 cut(s)	156, 334
HaeIII	GGCC	2 cut(s)	311, 332
Hin1II	CATG	1 cut(s)	61
Hpy166II	GTNNAC	2 cut(s)	298, 356
Hpy188III	TCNNGA	2 cut(s)	23, 150
Hpy8I	GTNNAC	2 cut(s)	298, 356
HpyAV	CCTTC	3 cut(s)	29, 200, 344
HpyCH4III	ACNGT	3 cut(s)	170, 295, 360
HpyCH4V	TGCA	3 cut(s)	61, 92, 185
Hsp92II	CATG	1 cut(s)	61
KspI	CCGCGG	1 cut(s)	315
LmnI	GCTCC	1 cut(s)	316
LpnPI	CCDG	8 cut(s)	36, 63, 81, 120, 127, 135, 278, 335
Lsp1109I	GCAGC	2 cut(s)	76, 104
MaeI	CTAG	2 cut(s)	116, 364
MboII	GAAGA	1 cut(s)	233
MhlI	GDGCHC	2 cut(s)	321, 334
MluCI	AATT	1 cut(s)	245
MnlI	CCTC	1 cut(s)	353
Mph1103I	ATGCAT	1 cut(s)	63
MslI	CAYNNNNRTG	1 cut(s)	227
MspA1I	CMGCKG	1 cut(s)	314
MvnI	CGCG	1 cut(s)	314
NlaIII	CATG	1 cut(s)	61
NlaIV	GGNNCC	3 cut(s)	318, 331, 332
NsiI	ATGCAT	1 cut(s)	63
NspI	RCATGY	1 cut(s)	61
PaeI	GCATGC	1 cut(s)	61
PkrI	GCNGC	3 cut(s)	91, 94, 313
PpuMI	RGGWCCY	1 cut(s)	98
Psp5II	RGGWCCY	1 cut(s)	98
PspFI	CCCAGC	1 cut(s)	77
PspN4I	GGNNCC	3 cut(s)	318, 331, 332
PspOMI	GGGCCC	1 cut(s)	330
PspPI	GGNCC	4 cut(s)	98, 330, 331, 360
PspPPI	RGGWCCY	1 cut(s)	98
PstI	CTGCAG	1 cut(s)	94
RseI	CAYNNNNRTG	1 cut(s)	227
SacII	CCGCGG	1 cut(s)	315
SatI	GCNGC	3 cut(s)	90, 93, 312
Sau96I	GGNCC	4 cut(s)	98, 330, 331, 360
SduI	GDGCHC	2 cut(s)	321, 334
SetI	ASST	5 cut(s)	37, 47, 103, 184, 267
SfcI	CTRYAG	1 cut(s)	90
Sfr303I	CCGCGG	1 cut(s)	315
SgrBI	CCGCGG	1 cut(s)	315
SinI	GGWCC	2 cut(s)	98, 360
SmiMI	CAYNNNNRTG	1 cut(s)	227
SphI	GCATGC	1 cut(s)	61
Sse9I	AATT	1 cut(s)	245
SsiI	CCGC	2 cut(s)	312, 314
SspMI	CTAG	2 cut(s)	116, 364
TaaI	ACNGT	3 cut(s)	170, 295, 360
TasI	AATT	1 cut(s)	245
TauI	GCSGC	1 cut(s)	314
TscAI	CASTG	1 cut(s)	300
TseI	GCWGC	2 cut(s)	89, 92
TspRI	CASTG	1 cut(s)	300
VpaK11BI	GGWCC	2 cut(s)	98, 360
XceI	RCATGY	1 cut(s)	61
XmiI	GTMKAC	1 cut(s)	355
XspI	CTAG	2 cut(s)	116, 364
Zsp2I	ATGCAT	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.